Wall clock time and date at job start Tue Mar 31 2020 06:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00370 * 2 1 4 4 H 1.48505 * 109.46706 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46903 * 119.99908 * 3 2 1 6 6 H 1.48499 * 109.47303 * 240.00072 * 3 2 1 7 7 C 1.37881 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00156 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99909 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47074 * 179.97438 * 9 7 2 11 11 C 1.47477 * 110.99941 * 265.97209 * 10 9 7 12 12 C 1.53512 * 87.93364 * 221.29592 * 11 10 9 13 13 O 1.42901 * 114.34360 * 272.36991 * 12 11 10 14 14 C 1.35944 * 116.99674 * 250.69775 * 13 12 11 15 15 C 1.38686 * 120.00940 * 5.46241 * 14 13 12 16 16 C 1.38383 * 119.98937 * 179.76346 * 15 14 13 17 17 F 1.35096 * 119.99504 * 180.25024 * 16 15 14 18 18 C 1.38605 * 120.01023 * 0.48475 * 16 15 14 19 19 F 1.35093 * 119.99286 * 179.74451 * 18 16 15 20 20 C 1.38608 * 120.01756 * 359.76475 * 18 16 15 21 21 F 1.35100 * 119.99277 * 179.97438 * 20 18 16 22 22 C 1.38378 * 120.01000 * 0.02562 * 20 18 16 23 23 C 1.47477 * 111.00131 * 169.99934 * 10 9 7 24 24 H 0.96999 * 119.99493 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46965 * 299.99608 * 9 7 2 26 26 H 1.09005 * 109.46726 * 60.00030 * 9 7 2 27 27 H 1.08999 * 113.48161 * 336.06224 * 11 10 9 28 28 H 1.09001 * 113.47876 * 106.52903 * 11 10 9 29 29 H 1.08996 * 114.17394 * 139.67215 * 12 11 10 30 30 H 1.08003 * 120.00718 * 359.97230 * 15 14 13 31 31 H 1.07999 * 119.99872 * 180.02562 * 22 20 18 32 32 H 1.08997 * 113.47852 * 253.47034 * 23 10 9 33 33 H 1.08999 * 113.47322 * 23.87525 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1030 1.6962 1.2125 6 1 3.1031 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2054 -3.6158 0.0005 11 6 2.4753 -4.0804 -1.3729 12 6 2.4188 -5.5183 -0.8382 13 8 3.6656 -6.0129 -0.3453 14 6 4.2839 -6.9727 -1.0833 15 6 3.7611 -7.3471 -2.3121 16 6 4.3935 -8.3207 -3.0652 17 9 3.8872 -8.6819 -4.2644 18 6 5.5436 -8.9287 -2.5871 19 9 6.1579 -9.8828 -3.3202 20 6 6.0636 -8.5585 -1.3567 21 9 7.1843 -9.1519 -0.8909 22 6 5.4342 -7.5820 -0.6049 23 6 1.5183 -4.8986 0.2396 24 1 -0.4849 0.8401 -0.0004 25 1 0.6240 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 1.6755 -3.8466 -2.0755 28 1 3.4595 -3.7931 -1.7430 29 1 1.9078 -6.2199 -1.4975 30 1 2.8624 -6.8765 -2.6827 31 1 5.8397 -7.2933 0.3536 32 1 1.6913 -5.3048 1.2362 33 1 0.4627 -4.8828 -0.0316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225910491.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:50 Heat of formation + Delta-G solvation = -95.294357 kcal Electronic energy + Delta-G solvation = -21771.079042 eV Core-core repulsion = 17770.723930 eV Total energy + Delta-G solvation = -4000.355112 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.96770 -49.47723 -48.64724 -40.78991 -38.97026 -36.64826 -32.95092 -31.05605 -30.08644 -29.15074 -25.81389 -25.47230 -23.81895 -23.25669 -21.77486 -20.12812 -18.99316 -18.13057 -17.72515 -17.06554 -16.96912 -16.41523 -16.26757 -15.75037 -15.59875 -15.30182 -15.10590 -15.00428 -14.69848 -14.55191 -13.96504 -13.89802 -13.51535 -12.99800 -12.49075 -12.29510 -12.03689 -12.01732 -11.59176 -11.20956 -10.98633 -10.63417 -10.45037 -10.23474 -9.79920 -9.37324 -9.35878 -8.57631 -8.50340 -8.01003 -6.10760 -4.12295 0.38431 0.50859 2.59178 2.81255 3.18757 3.30115 3.33937 3.37512 3.82555 3.94046 4.12822 4.35333 4.38424 4.44926 4.56134 4.67067 4.94715 5.16047 5.24644 5.32789 5.46650 5.49915 5.68604 5.73102 5.88974 5.97590 6.09267 6.23784 6.44851 6.99949 7.09355 7.53206 7.74436 7.99219 8.34667 8.95043 9.52409 11.00255 Molecular weight = 287.09amu Principal moments of inertia in cm(-1) A = 0.029052 B = 0.003120 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.565305 B = 8971.585892 C = 9191.872435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.287 1.287 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.507 4.507 8 H 0.064 0.936 9 C 0.156 3.844 10 N -0.456 5.456 11 C -0.005 4.005 12 C 0.036 3.964 13 O -0.258 6.258 14 C 0.195 3.805 15 C -0.234 4.234 16 C 0.144 3.856 17 F -0.117 7.117 18 C -0.017 4.017 19 F -0.122 7.122 20 C 0.141 3.859 21 F -0.115 7.115 22 C -0.175 4.175 23 C 0.002 3.998 24 H 0.263 0.737 25 H 0.032 0.968 26 H 0.005 0.995 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.162 0.838 31 H 0.163 0.837 32 H 0.088 0.912 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.001 -17.972 -4.453 19.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.213 1.213 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.546 4.546 8 H 0.082 0.918 9 C 0.030 3.970 10 N -0.179 5.179 11 C -0.135 4.135 12 C -0.021 4.021 13 O -0.169 6.169 14 C 0.147 3.853 15 C -0.253 4.253 16 C 0.123 3.877 17 F -0.095 7.095 18 C -0.038 4.038 19 F -0.101 7.101 20 C 0.121 3.879 21 F -0.093 7.093 22 C -0.194 4.194 23 C -0.127 4.127 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.023 0.977 27 H 0.099 0.901 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.180 0.820 31 H 0.181 0.819 32 H 0.106 0.894 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.464 -17.545 -3.864 19.454 hybrid contribution -0.278 0.479 -0.993 1.137 sum 7.186 -17.065 -4.857 19.143 Atomic orbital electron populations 1.69938 1.06089 1.27062 1.50906 1.25005 0.94905 0.99456 0.95281 0.86517 0.79424 0.82472 0.78771 1.21307 1.20073 1.20212 1.21044 0.93620 0.89665 1.50243 0.91825 1.20314 0.90652 0.89200 0.96823 1.69128 1.33478 1.01463 1.13851 1.24276 1.03290 0.91176 0.94734 1.23949 0.83265 0.95811 0.99027 1.86281 1.35022 1.49172 1.46455 1.18369 0.90974 0.87268 0.88716 1.21273 1.05183 1.02542 0.96341 1.16938 0.92102 0.95998 0.82665 1.91572 1.86041 1.90400 1.41482 1.17334 0.96740 0.96839 0.92869 1.91533 1.81819 1.60817 1.75909 1.16821 0.85166 0.94622 0.91308 1.91578 1.47841 1.81902 1.87982 1.20251 0.97016 0.98789 1.03375 1.24016 0.96281 0.93105 0.99292 0.92775 0.95043 0.97732 0.90136 0.89659 0.89054 0.82044 0.81905 0.89388 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.13 13.29 55.43 0.74 -25.39 16 2 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.51 -14.07 9.39 -34.44 -0.32 -14.39 16 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.16 3.86 4.57 -4.97 -0.02 3.84 16 10 N -0.46 -9.26 6.32 -246.12 -1.55 -10.81 16 11 C -0.01 -0.09 7.56 -7.55 -0.06 -0.14 16 12 C 0.04 0.47 4.06 -26.20 -0.11 0.36 16 13 O -0.26 -3.46 10.19 -19.56 -0.20 -3.66 16 14 C 0.20 2.17 6.68 -39.25 -0.26 1.91 16 15 C -0.23 -2.37 9.01 -39.36 -0.35 -2.73 16 16 C 0.14 1.55 7.30 -39.39 -0.29 1.26 16 17 F -0.12 -1.32 17.18 2.25 0.04 -1.28 16 18 C -0.02 -0.19 7.31 -39.31 -0.29 -0.47 16 19 F -0.12 -1.50 17.09 2.25 0.04 -1.46 16 20 C 0.14 1.50 7.30 -39.39 -0.29 1.21 16 21 F -0.11 -1.26 17.18 2.25 0.04 -1.22 16 22 C -0.17 -1.78 9.96 -39.36 -0.39 -2.17 16 23 C 0.00 0.04 7.52 -7.55 -0.06 -0.02 16 24 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.03 0.83 8.08 -51.93 -0.42 0.41 16 26 H 0.00 0.12 7.30 -51.93 -0.38 -0.25 16 27 H 0.08 1.29 7.42 -51.93 -0.39 0.90 16 28 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.09 0.90 5.89 -51.93 -0.31 0.60 16 30 H 0.16 1.41 5.87 -52.48 -0.31 1.10 16 31 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.08 1.18 7.91 -51.93 -0.41 0.77 16 LS Contribution 301.15 15.07 4.54 4.54 Total: -1.00 -29.66 301.15 -6.94 -36.60 By element: Atomic # 1 Polarization: -0.75 SS G_CDS: -3.02 Total: -3.78 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -2.54 Total: -9.91 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: -0.82 Total: -36.21 kcal Atomic # 8 Polarization: -3.46 SS G_CDS: -0.20 Total: -3.66 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.12 Total: -3.96 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.66 -6.94 -36.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225910491.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.693 kcal (2) G-P(sol) polarization free energy of solvation -29.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds