Wall clock time and date at job start Tue Mar 31 2020 06:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00370 * 2 1 4 4 H 1.48505 * 109.46706 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46903 * 119.99908 * 3 2 1 6 6 H 1.48499 * 109.47303 * 240.00072 * 3 2 1 7 7 C 1.37881 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00156 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99909 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47074 * 179.97438 * 9 7 2 11 11 C 1.47477 * 110.99941 * 265.97209 * 10 9 7 12 12 C 1.53512 * 87.93364 * 221.29592 * 11 10 9 13 13 O 1.42901 * 114.34360 * 272.36991 * 12 11 10 14 14 C 1.35944 * 116.99674 * 250.69775 * 13 12 11 15 15 C 1.38686 * 120.00940 * 5.46241 * 14 13 12 16 16 C 1.38383 * 119.98937 * 179.76346 * 15 14 13 17 17 F 1.35096 * 119.99504 * 180.25024 * 16 15 14 18 18 C 1.38605 * 120.01023 * 0.48475 * 16 15 14 19 19 F 1.35093 * 119.99286 * 179.74451 * 18 16 15 20 20 C 1.38608 * 120.01756 * 359.76475 * 18 16 15 21 21 F 1.35100 * 119.99277 * 179.97438 * 20 18 16 22 22 C 1.38378 * 120.01000 * 0.02562 * 20 18 16 23 23 C 1.47477 * 111.00131 * 169.99934 * 10 9 7 24 24 H 0.96999 * 119.99493 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46965 * 299.99608 * 9 7 2 26 26 H 1.09005 * 109.46726 * 60.00030 * 9 7 2 27 27 H 1.08999 * 113.48161 * 336.06224 * 11 10 9 28 28 H 1.09001 * 113.47876 * 106.52903 * 11 10 9 29 29 H 1.08996 * 114.17394 * 139.67215 * 12 11 10 30 30 H 1.08003 * 120.00718 * 359.97230 * 15 14 13 31 31 H 1.07999 * 119.99872 * 180.02562 * 22 20 18 32 32 H 1.08997 * 113.47852 * 253.47034 * 23 10 9 33 33 H 1.08999 * 113.47322 * 23.87525 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1030 1.6962 1.2125 6 1 3.1031 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2054 -3.6158 0.0005 11 6 2.4753 -4.0804 -1.3729 12 6 2.4188 -5.5183 -0.8382 13 8 3.6656 -6.0129 -0.3453 14 6 4.2839 -6.9727 -1.0833 15 6 3.7611 -7.3471 -2.3121 16 6 4.3935 -8.3207 -3.0652 17 9 3.8872 -8.6819 -4.2644 18 6 5.5436 -8.9287 -2.5871 19 9 6.1579 -9.8828 -3.3202 20 6 6.0636 -8.5585 -1.3567 21 9 7.1843 -9.1519 -0.8909 22 6 5.4342 -7.5820 -0.6049 23 6 1.5183 -4.8986 0.2396 24 1 -0.4849 0.8401 -0.0004 25 1 0.6240 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 1.6755 -3.8466 -2.0755 28 1 3.4595 -3.7931 -1.7430 29 1 1.9078 -6.2199 -1.4975 30 1 2.8624 -6.8765 -2.6827 31 1 5.8397 -7.2933 0.3536 32 1 1.6913 -5.3048 1.2362 33 1 0.4627 -4.8828 -0.0316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225910491.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:50 Heat of formation + Delta-G solvation = -114.637693 kcal Electronic energy + Delta-G solvation = -21771.917832 eV Core-core repulsion = 17770.723930 eV Total energy + Delta-G solvation = -4001.193902 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.84691 -50.32819 -49.53770 -41.86651 -40.10848 -37.69474 -35.00046 -31.96537 -31.32803 -30.45541 -27.41679 -26.84510 -24.86970 -24.20442 -23.39252 -21.26081 -19.94960 -19.02248 -18.65447 -18.54968 -17.94550 -17.83369 -17.27569 -16.88230 -16.60202 -16.47169 -16.26833 -16.00434 -15.93042 -15.47691 -15.40856 -15.09171 -14.97961 -14.08380 -13.82072 -13.58451 -13.51165 -13.04393 -12.96184 -12.73133 -12.49301 -12.30645 -12.15563 -11.52831 -11.44760 -11.24319 -10.60748 -10.17588 -9.59229 -9.47111 -8.22830 -6.32264 -0.42988 -0.35954 1.40802 1.43171 1.51383 1.63804 1.97261 2.32982 2.39678 2.96702 3.07152 3.09882 3.23555 3.32285 3.33834 3.54076 3.80555 3.87961 4.27313 4.34078 4.48153 4.51828 4.60075 4.64521 4.69023 4.82203 4.86832 4.96455 5.05739 5.33868 5.58751 5.79766 6.06219 6.14921 6.45474 6.81874 7.37373 8.87675 Molecular weight = 287.09amu Principal moments of inertia in cm(-1) A = 0.029052 B = 0.003120 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.565305 B = 8971.585892 C = 9191.872435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.966 3.034 4 H -0.281 1.281 5 H -0.271 1.271 6 H -0.268 1.268 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.171 3.829 10 N -0.487 5.487 11 C -0.012 4.012 12 C 0.064 3.936 13 O -0.274 6.274 14 C 0.186 3.814 15 C -0.220 4.220 16 C 0.141 3.859 17 F -0.120 7.120 18 C -0.022 4.022 19 F -0.130 7.130 20 C 0.140 3.860 21 F -0.118 7.118 22 C -0.164 4.164 23 C -0.001 4.001 24 H 0.265 0.735 25 H 0.004 0.996 26 H -0.010 1.010 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.135 0.865 30 H 0.180 0.820 31 H 0.176 0.824 32 H 0.093 0.907 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.560 -18.534 -4.880 20.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.790 3.210 4 H -0.206 1.206 5 H -0.196 1.196 6 H -0.193 1.193 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.044 3.956 10 N -0.210 5.210 11 C -0.141 4.141 12 C 0.008 3.992 13 O -0.186 6.186 14 C 0.138 3.862 15 C -0.239 4.239 16 C 0.120 3.880 17 F -0.098 7.098 18 C -0.043 4.043 19 F -0.109 7.109 20 C 0.120 3.880 21 F -0.096 7.096 22 C -0.183 4.183 23 C -0.130 4.130 24 H 0.074 0.926 25 H 0.022 0.978 26 H 0.008 0.992 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.152 0.848 30 H 0.197 0.803 31 H 0.193 0.807 32 H 0.111 0.889 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.039 -18.132 -4.295 20.294 hybrid contribution -0.408 0.570 -0.856 1.106 sum 7.631 -17.562 -5.152 19.829 Atomic orbital electron populations 1.70045 1.07500 1.28029 1.51656 1.25859 0.95766 1.03016 0.94758 0.85492 0.78254 0.78191 0.79040 1.20621 1.19609 1.19319 1.21404 0.93488 0.91475 1.50259 0.92663 1.19969 0.90665 0.90298 0.94666 1.69015 1.33116 1.02097 1.16807 1.24333 1.03035 0.93667 0.93049 1.23689 0.83068 0.94859 0.97596 1.86258 1.35281 1.49962 1.47119 1.18401 0.91352 0.87325 0.89094 1.21363 1.05298 1.01680 0.95576 1.16928 0.92073 0.96266 0.82698 1.91568 1.86061 1.90483 1.41691 1.17522 0.96997 0.96765 0.93063 1.91512 1.82029 1.61202 1.76158 1.16784 0.85200 0.94828 0.91200 1.91573 1.48021 1.81999 1.87998 1.20355 0.96435 0.97928 1.03627 1.24095 0.97290 0.90815 1.00758 0.92584 0.97795 0.99222 0.89714 0.90245 0.84753 0.80290 0.80667 0.88872 0.88855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.70 13.29 21.45 0.28 -54.42 16 2 C 0.00 0.24 5.46 84.65 0.46 0.70 16 3 Si 0.97 43.83 29.54 68.60 2.03 45.86 16 4 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 7 C -0.53 -29.72 9.39 25.60 0.24 -29.48 16 8 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16 9 C 0.17 8.64 4.57 85.56 0.39 9.03 16 10 N -0.49 -19.71 6.32 -932.98 -5.89 -25.60 16 11 C -0.01 -0.37 7.56 83.57 0.63 0.27 16 12 C 0.06 1.51 4.06 30.94 0.13 1.64 16 13 O -0.27 -6.67 10.19 -92.92 -0.95 -7.62 16 14 C 0.19 3.65 6.68 22.48 0.15 3.80 16 15 C -0.22 -3.80 9.01 22.41 0.20 -3.60 16 16 C 0.14 2.72 7.30 22.39 0.16 2.89 16 17 F -0.12 -2.46 17.18 44.97 0.77 -1.69 16 18 C -0.02 -0.47 7.31 22.45 0.16 -0.30 16 19 F -0.13 -3.05 17.09 44.97 0.77 -2.28 16 20 C 0.14 2.73 7.30 22.39 0.16 2.90 16 21 F -0.12 -2.42 17.18 44.97 0.77 -1.64 16 22 C -0.16 -2.98 9.96 22.41 0.22 -2.76 16 23 C 0.00 -0.02 7.52 83.57 0.63 0.61 16 24 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 25 H 0.00 0.22 8.08 -2.39 -0.02 0.20 16 26 H -0.01 -0.52 7.30 -2.38 -0.02 -0.54 16 27 H 0.08 2.62 7.42 -2.39 -0.02 2.61 16 28 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.14 2.07 5.89 -2.39 -0.01 2.06 16 30 H 0.18 2.41 5.87 -2.91 -0.02 2.39 16 31 H 0.18 2.71 8.06 -2.91 -0.02 2.69 16 32 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.09 2.56 7.91 -2.39 -0.02 2.54 16 Total: -1.00 -64.06 301.15 2.49 -61.57 By element: Atomic # 1 Polarization: -1.04 SS G_CDS: 1.16 Total: 0.13 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: 3.55 Total: -14.31 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -5.61 Total: -80.02 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -0.95 Total: -7.62 kcal Atomic # 9 Polarization: -7.92 SS G_CDS: 2.31 Total: -5.61 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -64.06 2.49 -61.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225910491.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.069 kcal (2) G-P(sol) polarization free energy of solvation -64.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds