Wall clock time and date at job start Tue Mar 31 2020 05:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86799 * 120.00176 * 2 1 4 4 H 1.48503 * 109.47527 * 270.00198 * 3 2 1 5 5 H 1.48497 * 109.47074 * 30.00346 * 3 2 1 6 6 H 1.48501 * 109.47258 * 149.99842 * 3 2 1 7 7 C 1.39937 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99761 * 197.50675 * 7 2 1 9 9 C 1.41437 * 120.00433 * 17.51058 * 7 2 1 10 10 C 1.40800 * 120.60667 * 203.39985 * 9 7 2 11 11 N 1.31497 * 120.65985 * 180.02562 * 10 9 7 12 12 C 1.31947 * 122.12164 * 0.02562 * 11 10 9 13 13 C 1.39661 * 121.15151 * 0.02562 * 12 11 10 14 14 C 1.48432 * 120.40734 * 179.97438 * 13 12 11 15 15 C 1.39420 * 120.03087 * 180.02562 * 14 13 12 16 16 C 1.38345 * 120.15602 * 179.97438 * 15 14 13 17 17 F 1.35102 * 119.88548 * 180.02562 * 16 15 14 18 18 C 1.38281 * 120.22266 * 0.02677 * 16 15 14 19 19 C 1.39638 * 120.06514 * 359.97438 * 18 16 15 20 20 C 1.47756 * 120.07663 * 179.97438 * 19 18 16 21 21 O 1.21465 * 119.99769 * 180.02562 * 20 19 18 22 22 O 1.34709 * 119.99910 * 359.97438 * 20 19 18 23 23 C 1.39046 * 120.03374 * 359.74515 * 14 13 12 24 24 C 1.39159 * 119.18014 * 359.97438 * 13 12 11 25 25 H 0.97006 * 120.00242 * 359.97438 * 1 2 3 26 26 H 1.07996 * 119.67113 * 359.97438 * 10 9 7 27 27 H 1.07999 * 119.42304 * 180.02562 * 12 11 10 28 28 H 1.08001 * 119.92291 * 359.97438 * 15 14 13 29 29 H 1.08005 * 119.96187 * 179.97438 * 18 16 15 30 30 H 0.96695 * 116.99570 * 179.97438 * 22 20 19 31 31 H 1.08005 * 120.10730 * 0.02562 * 23 14 13 32 32 H 1.08006 * 120.94961 * 179.72846 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0465 -1.4001 5 1 1.4398 2.6526 0.7001 6 1 3.5398 1.4401 0.7001 7 6 2.0079 -1.2119 -0.0005 8 1 3.0504 -1.2337 0.2808 9 6 1.3499 -2.4083 -0.3696 10 6 1.8319 -3.6563 0.0694 11 7 1.2213 -4.7692 -0.2735 12 6 0.1435 -4.7723 -1.0347 13 6 -0.4040 -3.5814 -1.5167 14 6 -1.6167 -3.6041 -2.3723 15 6 -2.1564 -2.4105 -2.8496 16 6 -3.2863 -2.4287 -3.6477 17 9 -3.8043 -1.2689 -4.1077 18 6 -3.8872 -3.6301 -3.9760 19 6 -3.3546 -4.8311 -3.5030 20 6 -3.9968 -6.1148 -3.8532 21 8 -3.5325 -7.1586 -3.4406 22 8 -5.0978 -6.1275 -4.6293 23 6 -2.2123 -4.8162 -2.7032 24 6 0.2015 -2.3731 -1.1850 25 1 -0.4851 0.8401 0.0004 26 1 2.7123 -3.6999 0.6932 27 1 -0.3235 -5.7123 -1.2893 28 1 -1.6912 -1.4694 -2.5958 29 1 -4.7695 -3.6394 -4.5990 30 1 -5.4822 -6.9914 -4.8318 31 1 -1.7942 -5.7428 -2.3383 32 1 -0.1952 -1.4355 -1.5456 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241829163.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:58 Heat of formation + Delta-G solvation = -92.783757 kcal Electronic energy + Delta-G solvation = -21127.060815 eV Core-core repulsion = 17545.211006 eV Total energy + Delta-G solvation = -3581.849809 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.074 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.79164 -40.44974 -39.07732 -37.77853 -36.18891 -34.26162 -32.78549 -30.92348 -30.43986 -28.63552 -25.94797 -24.86445 -23.26518 -22.24070 -20.93192 -20.45808 -18.31674 -17.86298 -17.01510 -16.50306 -16.17865 -15.80467 -15.72798 -15.48774 -15.38025 -15.01998 -14.30451 -14.00314 -13.52076 -13.01337 -12.92842 -12.84445 -12.15244 -12.12844 -11.92274 -11.65087 -11.51103 -11.45747 -11.34416 -11.02490 -10.72694 -10.63366 -10.03804 -9.62090 -9.51267 -8.80366 -8.29923 -8.07586 -7.52207 -7.01157 -4.65796 0.58985 1.07558 2.24497 2.60043 2.85520 2.85903 2.94999 2.97924 3.06776 3.74099 3.81537 4.23069 4.45722 4.73389 4.94406 5.10698 5.27256 5.32687 5.48085 5.64747 5.84379 5.96522 6.06441 6.23544 6.29414 6.33097 6.38940 6.57584 6.83534 6.86320 6.93158 7.03311 7.45187 7.65388 7.71116 7.76490 8.22899 8.49012 8.51778 9.44208 9.89516 Molecular weight = 287.07amu Principal moments of inertia in cm(-1) A = 0.019661 B = 0.004724 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.820567 B = 5925.717544 C = 7269.325714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.446 4.446 8 H 0.086 0.914 9 C 0.060 3.940 10 C -0.010 4.010 11 N -0.467 5.467 12 C -0.019 4.019 13 C -0.101 4.101 14 C 0.015 3.985 15 C -0.113 4.113 16 C 0.090 3.910 17 F -0.138 7.138 18 C -0.117 4.117 19 C -0.103 4.103 20 C 0.532 3.468 21 O -0.508 6.508 22 O -0.513 6.513 23 C -0.065 4.065 24 C -0.112 4.112 25 H 0.286 0.714 26 H 0.130 0.870 27 H 0.125 0.875 28 H 0.150 0.850 29 H 0.145 0.855 30 H 0.413 0.587 31 H 0.148 0.852 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.955 -2.340 -7.511 11.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.145 4.145 3 Si 0.738 3.262 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.476 4.476 8 H 0.104 0.896 9 C 0.056 3.944 10 C -0.171 4.171 11 N -0.174 5.174 12 C -0.177 4.177 13 C -0.104 4.104 14 C 0.014 3.986 15 C -0.132 4.132 16 C 0.071 3.929 17 F -0.116 7.116 18 C -0.136 4.136 19 C -0.104 4.104 20 C 0.376 3.624 21 O -0.397 6.397 22 O -0.324 6.324 23 C -0.083 4.083 24 C -0.137 4.137 25 H 0.097 0.903 26 H 0.147 0.853 27 H 0.143 0.857 28 H 0.168 0.832 29 H 0.163 0.837 30 H 0.272 0.728 31 H 0.165 0.835 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.561 -2.827 -7.010 10.691 hybrid contribution -0.477 1.327 -0.463 1.484 sum -8.038 -1.501 -7.473 11.077 Atomic orbital electron populations 1.69760 1.07743 1.29958 1.33916 1.25990 0.94825 1.01768 0.91871 0.86198 0.80526 0.79911 0.79589 1.19024 1.20075 1.18313 1.19607 0.98307 0.90716 1.38951 0.89562 1.18469 0.92061 0.93856 0.90042 1.22623 1.02299 0.87952 1.04218 1.66984 1.07718 1.31944 1.10728 1.21814 0.96809 0.95279 1.03825 1.19296 0.94834 0.95979 1.00264 1.18697 0.94348 0.90994 0.94576 1.21686 0.94546 1.00761 0.96184 1.17393 0.95083 0.81435 0.99034 1.91507 1.86160 1.46745 1.87226 1.21234 1.01026 0.90210 1.01144 1.18617 0.98107 0.89897 1.03801 1.20788 0.77640 0.89255 0.74702 1.90904 1.63195 1.34138 1.51507 1.84563 1.42098 1.40774 1.65000 1.21444 0.92778 0.99278 0.94784 1.21842 0.97749 0.95896 0.98253 0.90302 0.85294 0.85715 0.83235 0.83702 0.72832 0.83472 0.84847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.52 10.92 55.55 0.61 -17.91 16 2 C 0.07 1.70 5.18 -17.35 -0.09 1.61 16 3 Si 0.91 17.14 29.59 -169.99 -5.03 12.10 16 4 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 5 H -0.28 -5.10 7.11 56.52 0.40 -4.70 16 6 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 7 C -0.45 -10.79 9.08 -37.73 -0.34 -11.14 16 8 H 0.09 1.98 7.90 -52.48 -0.41 1.57 16 9 C 0.06 1.49 5.59 -106.71 -0.60 0.89 16 10 C -0.01 -0.23 10.96 -16.73 -0.18 -0.42 16 11 N -0.47 -11.09 10.32 -12.29 -0.13 -11.21 16 12 C -0.02 -0.43 10.59 -16.97 -0.18 -0.61 16 13 C -0.10 -2.19 5.88 -104.82 -0.62 -2.81 16 14 C 0.01 0.27 5.87 -104.96 -0.62 -0.34 16 15 C -0.11 -1.94 9.41 -39.10 -0.37 -2.30 16 16 C 0.09 1.36 7.28 -39.53 -0.29 1.07 16 17 F -0.14 -2.08 17.26 2.25 0.04 -2.04 16 18 C -0.12 -1.58 9.59 -39.04 -0.37 -1.96 16 19 C -0.10 -1.49 5.87 -105.03 -0.62 -2.10 16 20 C 0.53 7.04 8.27 34.62 0.29 7.32 16 21 O -0.51 -8.04 17.13 -19.24 -0.33 -8.37 16 22 O -0.51 -4.84 12.67 -40.52 -0.51 -5.35 16 23 C -0.06 -1.06 8.98 -38.83 -0.35 -1.40 16 24 C -0.11 -2.65 8.16 -38.24 -0.31 -2.96 16 25 H 0.29 6.10 8.30 -40.82 -0.34 5.76 16 26 H 0.13 2.84 8.06 -52.49 -0.42 2.42 16 27 H 0.13 2.44 6.19 -52.49 -0.33 2.11 16 28 H 0.15 2.65 6.25 -52.49 -0.33 2.33 16 29 H 0.15 1.63 7.60 -52.48 -0.40 1.23 16 30 H 0.41 1.90 9.11 45.56 0.42 2.31 16 31 H 0.15 2.39 5.79 -52.48 -0.30 2.08 16 32 H 0.13 3.14 4.43 -52.48 -0.23 2.90 16 LS Contribution 293.56 15.07 4.42 4.42 Total: -1.00 -27.73 293.56 -6.72 -34.45 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -1.14 Total: 9.05 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -4.65 Total: -15.15 kcal Atomic # 7 Polarization: -29.60 SS G_CDS: 0.48 Total: -29.12 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.84 Total: -13.72 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 17.14 SS G_CDS: -5.03 Total: 12.10 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.73 -6.72 -34.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241829163.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.333 kcal (2) G-P(sol) polarization free energy of solvation -27.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds