Wall clock time and date at job start Tue Mar 31 2020 05:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00202 * 2 1 4 4 H 1.48498 * 109.46940 * 275.72112 * 3 2 1 5 5 H 1.48506 * 109.47008 * 35.71990 * 3 2 1 6 6 H 1.48496 * 109.47211 * 155.72072 * 3 2 1 7 7 C 1.38809 * 119.99478 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00529 * 337.41276 * 7 2 1 9 9 N 1.36938 * 120.00042 * 157.41994 * 7 2 1 10 10 C 1.46507 * 119.99619 * 322.60944 * 9 7 2 11 11 C 1.52996 * 109.47118 * 263.78907 * 10 9 7 12 12 C 1.50699 * 109.47188 * 180.02562 * 11 10 9 13 13 O 1.20827 * 119.99961 * 359.97438 * 12 11 10 14 14 O 1.34227 * 119.99912 * 180.02562 * 12 11 10 15 15 C 1.46502 * 120.00519 * 142.60749 * 9 7 2 16 16 C 1.52995 * 109.47126 * 270.00200 * 15 9 7 17 17 N 1.46497 * 109.47232 * 179.97438 * 16 15 9 18 18 C 1.35039 * 126.03811 * 124.99647 * 17 16 15 19 19 C 1.35372 * 107.72983 * 179.97438 * 18 17 16 20 20 Cl 1.73610 * 126.04577 * 179.97438 * 19 18 17 21 21 C 1.39928 * 107.91070 * 0.02562 * 19 18 17 22 22 N 1.30856 * 108.20571 * 359.75610 * 21 19 18 23 23 H 0.97003 * 119.99903 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47200 * 23.78905 * 10 9 7 25 25 H 1.09000 * 109.47196 * 143.78780 * 10 9 7 26 26 H 1.09001 * 109.47084 * 300.00069 * 11 10 9 27 27 H 1.09000 * 109.47191 * 59.99870 * 11 10 9 28 28 H 0.96709 * 117.00114 * 180.02562 * 14 12 11 29 29 H 1.08997 * 109.47103 * 149.99945 * 15 9 7 30 30 H 1.08996 * 109.46443 * 30.00162 * 15 9 7 31 31 H 1.09003 * 109.47193 * 300.00208 * 16 15 9 32 32 H 1.09007 * 109.47207 * 59.99848 * 16 15 9 33 33 H 1.08004 * 126.13663 * 359.94901 * 18 17 16 34 34 H 1.07997 * 125.89732 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3769 2.1161 -1.3931 5 1 1.5133 2.6148 0.8174 6 1 3.6030 1.4082 0.5757 7 6 2.0101 -1.2022 0.0005 8 1 1.5322 -2.1015 0.3602 9 7 3.3008 -1.2480 -0.4548 10 6 3.7015 -0.4320 -1.6037 11 6 3.6362 -1.2773 -2.8772 12 6 4.0490 -0.4382 -4.0589 13 8 4.3628 0.7176 -3.8990 14 8 4.0671 -0.9744 -5.2893 15 6 4.2809 -2.1128 0.2069 16 6 4.9741 -1.3343 1.3267 17 7 5.9537 -2.1993 1.9888 18 6 7.2661 -1.9296 2.1573 19 6 7.8212 -2.9759 2.8128 20 17 9.4884 -3.1245 3.2735 21 6 6.8138 -3.9170 3.0523 22 7 5.6935 -3.4501 2.5632 23 1 -0.4850 0.8401 -0.0004 24 1 3.0272 0.4193 -1.6977 25 1 4.7205 -0.0738 -1.4572 26 1 4.3105 -2.1286 -2.7833 27 1 2.6172 -1.6355 -3.0237 28 1 4.3392 -0.3972 -6.0159 29 1 5.0233 -2.4428 -0.5197 30 1 3.7736 -2.9808 0.6278 31 1 5.4813 -0.4662 0.9057 32 1 4.2316 -1.0043 2.0534 33 1 7.7807 -1.0390 1.8278 34 1 6.9385 -4.8635 3.5572 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072977.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:52 Heat of formation + Delta-G solvation = 2.463417 kcal Electronic energy + Delta-G solvation = -20268.108636 eV Core-core repulsion = 16843.709261 eV Total energy + Delta-G solvation = -3424.399375 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.082 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.12419 -39.97649 -36.89493 -36.37056 -35.84794 -33.44040 -32.02520 -30.79973 -29.84798 -27.80592 -24.87515 -24.21710 -21.55861 -21.09121 -20.82869 -19.95729 -17.93655 -17.29721 -16.86674 -16.16805 -15.98202 -15.35144 -15.18148 -14.56783 -14.42767 -13.80565 -13.56603 -13.34153 -13.16416 -12.90137 -12.39885 -12.31324 -12.05028 -11.87708 -11.52754 -11.37390 -11.31965 -11.09209 -10.69290 -10.56638 -10.33803 -10.24671 -10.02397 -9.75326 -9.43419 -8.73654 -8.35228 -7.20249 -6.20082 -3.66645 1.86565 2.04791 2.47542 2.65628 2.90529 3.23238 3.32195 3.34819 3.37445 4.33820 4.58835 4.80139 4.88943 5.11717 5.18030 5.35909 5.49357 5.53063 5.61859 5.67071 5.76239 5.84358 6.01078 6.21904 6.36028 6.41752 6.49053 6.59849 6.72466 6.99525 7.66713 7.79645 8.11710 8.16992 8.71815 9.46543 9.80900 10.93998 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.015043 B = 0.004535 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.911559 B = 6172.944777 C = 7228.581304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.045 3.955 3 Si 0.869 3.131 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.269 1.269 7 C -0.285 4.285 8 H 0.086 0.914 9 N -0.593 5.593 10 C 0.145 3.855 11 C -0.132 4.132 12 C 0.479 3.521 13 O -0.523 6.523 14 O -0.523 6.523 15 C 0.142 3.858 16 C 0.102 3.898 17 N -0.344 5.344 18 C 0.068 3.932 19 C -0.197 4.197 20 Cl -0.056 7.056 21 C 0.051 3.949 22 N -0.272 5.272 23 H 0.267 0.733 24 H 0.072 0.928 25 H 0.047 0.953 26 H 0.097 0.903 27 H 0.114 0.886 28 H 0.401 0.599 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.178 0.822 34 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.287 -4.087 -0.869 14.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.157 4.157 3 Si 0.698 3.302 4 H -0.205 1.205 5 H -0.225 1.225 6 H -0.194 1.194 7 C -0.413 4.413 8 H 0.104 0.896 9 N -0.313 5.313 10 C 0.019 3.981 11 C -0.172 4.172 12 C 0.322 3.678 13 O -0.411 6.411 14 O -0.334 6.334 15 C 0.015 3.985 16 C -0.020 4.020 17 N -0.126 5.126 18 C -0.082 4.082 19 C -0.236 4.236 20 Cl -0.028 7.028 21 C -0.135 4.135 22 N -0.094 5.094 23 H 0.077 0.923 24 H 0.090 0.910 25 H 0.065 0.935 26 H 0.115 0.885 27 H 0.132 0.868 28 H 0.259 0.741 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.195 0.805 34 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 12.796 -4.059 -0.694 13.443 hybrid contribution 1.676 1.693 -0.324 2.404 sum 14.472 -2.366 -1.018 14.699 Atomic orbital electron populations 1.69856 1.06032 1.27158 1.49571 1.25488 0.95087 0.97820 0.97353 0.87053 0.80516 0.84848 0.77763 1.20530 1.22495 1.19384 1.18820 0.85867 0.94848 1.41746 0.89626 1.44142 1.07715 1.51035 1.28441 1.21120 0.99166 0.93302 0.84548 1.22217 1.04910 0.99723 0.90336 1.24072 0.72873 0.87006 0.83864 1.90693 1.45383 1.19161 1.85863 1.84612 1.81482 1.48852 1.18456 1.21226 0.91700 0.93964 0.91627 1.23123 0.89874 0.91917 0.97112 1.48987 1.06640 1.14831 1.42129 1.22290 0.85841 0.99922 1.00121 1.20722 0.87609 0.99517 1.15737 1.98299 1.14858 1.97942 1.91727 1.23818 0.88911 1.00122 1.00618 1.77557 1.22102 0.94777 1.15002 0.92304 0.90995 0.93494 0.88492 0.86825 0.74088 0.93484 0.90823 0.89295 0.88608 0.80483 0.79651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.47 13.97 55.49 0.78 -24.69 16 2 C 0.05 1.21 5.26 -17.43 -0.09 1.12 16 3 Si 0.87 20.85 25.05 -169.99 -4.26 16.60 16 4 H -0.28 -6.79 6.69 56.52 0.38 -6.41 16 5 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.28 -7.19 9.91 -15.06 -0.15 -7.34 16 8 H 0.09 2.37 8.06 -52.48 -0.42 1.95 16 9 N -0.59 -12.36 2.08 -173.24 -0.36 -12.72 16 10 C 0.14 2.86 3.58 -4.04 -0.01 2.84 16 11 C -0.13 -2.19 6.13 -27.89 -0.17 -2.36 16 12 C 0.48 7.73 8.33 36.01 0.30 8.03 16 13 O -0.52 -10.01 16.74 -18.75 -0.31 -10.32 16 14 O -0.52 -6.62 13.42 -39.25 -0.53 -7.15 16 15 C 0.14 2.51 5.88 -4.04 -0.02 2.48 16 16 C 0.10 1.66 6.83 -4.05 -0.03 1.63 16 17 N -0.34 -5.23 3.68 -61.33 -0.23 -5.46 16 18 C 0.07 0.88 11.43 -17.16 -0.20 0.69 16 19 C -0.20 -2.51 6.65 -39.97 -0.27 -2.77 16 20 Cl -0.06 -0.63 29.30 -51.86 -1.52 -2.15 16 21 C 0.05 0.68 12.02 -17.33 -0.21 0.47 16 22 N -0.27 -4.33 12.42 30.64 0.38 -3.95 16 23 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 24 H 0.07 1.64 3.56 -51.93 -0.19 1.45 16 25 H 0.05 0.86 8.07 -51.93 -0.42 0.44 16 26 H 0.10 1.40 8.12 -51.93 -0.42 0.98 16 27 H 0.11 1.99 8.14 -51.93 -0.42 1.57 16 28 H 0.40 3.23 9.10 45.56 0.41 3.64 16 29 H 0.05 0.75 8.05 -51.93 -0.42 0.33 16 30 H 0.07 1.40 8.04 -51.93 -0.42 0.98 16 31 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 32 H 0.10 1.74 8.14 -51.93 -0.42 1.31 16 33 H 0.18 1.78 8.06 -52.48 -0.42 1.36 16 34 H 0.19 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 315.38 15.07 4.75 4.75 Total: -1.00 -30.69 315.38 -5.28 -35.98 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -3.14 Total: 4.33 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -0.85 Total: 4.79 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: 0.57 Total: -46.83 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.84 Total: -17.47 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.26 Total: 16.60 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.52 Total: -2.15 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.69 -5.28 -35.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072977.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.439 kcal (2) G-P(sol) polarization free energy of solvation -30.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds