Wall clock time and date at job start Tue Mar 31 2020 05:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00202 * 2 1 4 4 H 1.48498 * 109.46940 * 275.72112 * 3 2 1 5 5 H 1.48506 * 109.47008 * 35.71990 * 3 2 1 6 6 H 1.48496 * 109.47211 * 155.72072 * 3 2 1 7 7 C 1.38809 * 119.99478 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00529 * 337.41276 * 7 2 1 9 9 N 1.36938 * 120.00042 * 157.41994 * 7 2 1 10 10 C 1.46507 * 119.99619 * 322.60944 * 9 7 2 11 11 C 1.52996 * 109.47118 * 263.78907 * 10 9 7 12 12 C 1.50699 * 109.47188 * 180.02562 * 11 10 9 13 13 O 1.20827 * 119.99961 * 359.97438 * 12 11 10 14 14 O 1.34227 * 119.99912 * 180.02562 * 12 11 10 15 15 C 1.46502 * 120.00519 * 142.60749 * 9 7 2 16 16 C 1.52995 * 109.47126 * 270.00200 * 15 9 7 17 17 N 1.46497 * 109.47232 * 179.97438 * 16 15 9 18 18 C 1.35039 * 126.03811 * 124.99647 * 17 16 15 19 19 C 1.35372 * 107.72983 * 179.97438 * 18 17 16 20 20 Cl 1.73610 * 126.04577 * 179.97438 * 19 18 17 21 21 C 1.39928 * 107.91070 * 0.02562 * 19 18 17 22 22 N 1.30856 * 108.20571 * 359.75610 * 21 19 18 23 23 H 0.97003 * 119.99903 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47200 * 23.78905 * 10 9 7 25 25 H 1.09000 * 109.47196 * 143.78780 * 10 9 7 26 26 H 1.09001 * 109.47084 * 300.00069 * 11 10 9 27 27 H 1.09000 * 109.47191 * 59.99870 * 11 10 9 28 28 H 0.96709 * 117.00114 * 180.02562 * 14 12 11 29 29 H 1.08997 * 109.47103 * 149.99945 * 15 9 7 30 30 H 1.08996 * 109.46443 * 30.00162 * 15 9 7 31 31 H 1.09003 * 109.47193 * 300.00208 * 16 15 9 32 32 H 1.09007 * 109.47207 * 59.99848 * 16 15 9 33 33 H 1.08004 * 126.13663 * 359.94901 * 18 17 16 34 34 H 1.07997 * 125.89732 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3769 2.1161 -1.3931 5 1 1.5133 2.6148 0.8174 6 1 3.6030 1.4082 0.5757 7 6 2.0101 -1.2022 0.0005 8 1 1.5322 -2.1015 0.3602 9 7 3.3008 -1.2480 -0.4548 10 6 3.7015 -0.4320 -1.6037 11 6 3.6362 -1.2773 -2.8772 12 6 4.0490 -0.4382 -4.0589 13 8 4.3628 0.7176 -3.8990 14 8 4.0671 -0.9744 -5.2893 15 6 4.2809 -2.1128 0.2069 16 6 4.9741 -1.3343 1.3267 17 7 5.9537 -2.1993 1.9888 18 6 7.2661 -1.9296 2.1573 19 6 7.8212 -2.9759 2.8128 20 17 9.4884 -3.1245 3.2735 21 6 6.8138 -3.9170 3.0523 22 7 5.6935 -3.4501 2.5632 23 1 -0.4850 0.8401 -0.0004 24 1 3.0272 0.4193 -1.6977 25 1 4.7205 -0.0738 -1.4572 26 1 4.3105 -2.1286 -2.7833 27 1 2.6172 -1.6355 -3.0237 28 1 4.3392 -0.3972 -6.0159 29 1 5.0233 -2.4428 -0.5197 30 1 3.7736 -2.9808 0.6278 31 1 5.4813 -0.4662 0.9057 32 1 4.2316 -1.0043 2.0534 33 1 7.7807 -1.0390 1.8278 34 1 6.9385 -4.8635 3.5572 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601072977.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:52 Heat of formation + Delta-G solvation = -18.203566 kcal Electronic energy + Delta-G solvation = -20269.004823 eV Core-core repulsion = 16843.709261 eV Total energy + Delta-G solvation = -3425.295562 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.18583 -41.23579 -38.43504 -37.31585 -37.06308 -34.78897 -33.87139 -32.16813 -30.99193 -29.19652 -26.54930 -25.61406 -22.95934 -22.14228 -22.04877 -21.35431 -19.25400 -18.65261 -18.30987 -17.64400 -17.36238 -16.74111 -16.55984 -15.83227 -15.59525 -15.21394 -15.04869 -14.69089 -14.41143 -14.22000 -13.87116 -13.66170 -13.60187 -13.36203 -12.80285 -12.62745 -12.53972 -12.48317 -12.33736 -11.90773 -11.86539 -11.64235 -11.52738 -11.35163 -10.72730 -10.56513 -9.40354 -8.95667 -8.25595 -5.67628 0.82924 1.02223 1.21717 1.33728 1.39542 1.46827 1.65891 1.84942 2.14125 2.37073 3.03588 3.25095 3.68507 3.87695 3.99344 4.04220 4.11598 4.23302 4.39083 4.52341 4.55094 4.65159 4.66356 4.88932 4.89152 5.01098 5.16171 5.45190 5.61520 5.86297 5.89978 6.15943 6.62008 6.85230 7.02620 7.51520 7.90401 8.92968 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.015043 B = 0.004535 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.911559 B = 6172.944777 C = 7228.581304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.005 4.005 3 Si 0.925 3.075 4 H -0.285 1.285 5 H -0.310 1.310 6 H -0.244 1.244 7 C -0.261 4.261 8 H 0.050 0.950 9 N -0.600 5.600 10 C 0.142 3.858 11 C -0.127 4.127 12 C 0.490 3.510 13 O -0.555 6.555 14 O -0.511 6.511 15 C 0.149 3.851 16 C 0.114 3.886 17 N -0.359 5.359 18 C 0.074 3.926 19 C -0.202 4.202 20 Cl -0.040 7.040 21 C 0.058 3.942 22 N -0.316 5.316 23 H 0.264 0.736 24 H 0.041 0.959 25 H 0.068 0.932 26 H 0.125 0.875 27 H 0.101 0.899 28 H 0.425 0.575 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.109 0.891 32 H 0.070 0.930 33 H 0.208 0.792 34 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.467 -4.264 -1.445 18.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.203 4.203 3 Si 0.754 3.246 4 H -0.213 1.213 5 H -0.238 1.238 6 H -0.167 1.167 7 C -0.390 4.390 8 H 0.068 0.932 9 N -0.322 5.322 10 C 0.017 3.983 11 C -0.167 4.167 12 C 0.334 3.666 13 O -0.446 6.446 14 O -0.324 6.324 15 C 0.022 3.978 16 C -0.009 4.009 17 N -0.141 5.141 18 C -0.075 4.075 19 C -0.241 4.241 20 Cl -0.012 7.012 21 C -0.128 4.128 22 N -0.137 5.137 23 H 0.073 0.927 24 H 0.059 0.941 25 H 0.087 0.913 26 H 0.143 0.857 27 H 0.119 0.881 28 H 0.287 0.713 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.127 0.873 32 H 0.089 0.911 33 H 0.224 0.776 34 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 16.045 -4.266 -1.292 16.653 hybrid contribution 0.815 1.567 -0.179 1.775 sum 16.860 -2.699 -1.471 17.138 Atomic orbital electron populations 1.69972 1.07653 1.27537 1.52978 1.25981 0.95444 1.00627 0.98257 0.86149 0.80369 0.81072 0.77048 1.21283 1.23848 1.16711 1.18622 0.87600 0.93251 1.39569 0.93201 1.44089 1.06909 1.51534 1.29673 1.21078 0.99301 0.92615 0.85324 1.21991 1.05037 1.00021 0.89630 1.23728 0.72088 0.86106 0.84658 1.90694 1.47072 1.20358 1.86508 1.84534 1.80839 1.49009 1.18025 1.21138 0.91341 0.92713 0.92569 1.22709 0.90042 0.92191 0.95934 1.48759 1.07242 1.14860 1.43193 1.22801 0.84801 1.00778 0.99120 1.20833 0.88399 0.99334 1.15542 1.98310 1.13427 1.97895 1.91579 1.24314 0.88319 1.00872 0.99317 1.77536 1.23783 0.95683 1.16725 0.92681 0.94054 0.91334 0.85660 0.88084 0.71334 0.90860 0.92828 0.87255 0.91124 0.77556 0.77178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.02 13.97 21.65 0.30 -55.72 16 2 C -0.01 -0.28 5.26 84.86 0.45 0.17 16 3 Si 0.93 43.69 25.05 68.60 1.72 45.41 16 4 H -0.29 -13.70 6.69 99.48 0.67 -13.03 16 5 H -0.31 -15.10 7.11 99.48 0.71 -14.39 16 6 H -0.24 -10.32 7.11 99.48 0.71 -9.62 16 7 C -0.26 -13.47 9.91 84.03 0.83 -12.64 16 8 H 0.05 2.90 8.06 -2.91 -0.02 2.88 16 9 N -0.60 -24.55 2.08 -702.00 -1.46 -26.02 16 10 C 0.14 5.36 3.58 86.38 0.31 5.67 16 11 C -0.13 -3.96 6.13 29.85 0.18 -3.78 16 12 C 0.49 14.62 8.33 71.24 0.59 15.22 16 13 O -0.55 -20.11 16.74 21.96 0.37 -19.74 16 14 O -0.51 -11.34 13.42 -51.38 -0.69 -12.03 16 15 C 0.15 5.04 5.88 86.38 0.51 5.54 16 16 C 0.11 3.51 6.83 86.38 0.59 4.10 16 17 N -0.36 -10.19 3.68 -347.94 -1.28 -11.47 16 18 C 0.07 1.68 11.43 83.54 0.95 2.63 16 19 C -0.20 -4.58 6.65 22.02 0.15 -4.43 16 20 Cl -0.04 -0.77 29.30 -2.72 -0.08 -0.85 16 21 C 0.06 1.40 12.02 85.25 1.02 2.43 16 22 N -0.32 -9.64 12.42 -56.98 -0.71 -10.35 16 23 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 24 H 0.04 1.84 3.56 -2.39 -0.01 1.83 16 25 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 26 H 0.13 3.19 8.12 -2.39 -0.02 3.17 16 27 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 28 H 0.43 5.39 9.10 -74.05 -0.67 4.72 16 29 H 0.07 2.11 8.05 -2.39 -0.02 2.09 16 30 H 0.05 2.03 8.04 -2.39 -0.02 2.01 16 31 H 0.11 2.91 8.07 -2.39 -0.02 2.89 16 32 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 33 H 0.21 3.28 8.06 -2.91 -0.02 3.26 16 34 H 0.21 3.72 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -68.01 315.38 4.18 -63.83 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.42 Total: 12.02 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 5.59 Total: 14.91 kcal Atomic # 7 Polarization: -100.40 SS G_CDS: -3.15 Total: -103.55 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -0.32 Total: -31.77 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.72 Total: 45.41 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -0.08 Total: -0.85 kcal Total: -68.01 4.18 -63.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072977.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.626 kcal (2) G-P(sol) polarization free energy of solvation -68.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds