Wall clock time and date at job start Tue Mar 31 2020 05:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47093 * 2 1 4 4 N 1.46503 * 109.46891 * 120.00023 * 2 1 3 5 5 C 1.36759 * 127.13895 * 299.97370 * 4 2 1 6 6 N 1.30299 * 107.31730 * 180.02562 * 5 4 2 7 7 N 1.28524 * 110.08083 * 359.97438 * 6 5 4 8 8 C 1.31287 * 109.85335 * 0.02562 * 7 6 5 9 9 S 1.76208 * 126.48246 * 179.97438 * 8 7 6 10 10 C 1.80999 * 100.00145 * 0.02562 * 9 8 7 11 11 C 1.52999 * 109.47050 * 179.97438 * 10 9 8 12 12 C 1.53004 * 109.46839 * 179.97438 * 11 10 9 13 13 S 1.81002 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.76197 * 99.99756 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00257 * 359.97438 * 14 13 12 16 16 C 1.38806 * 119.99484 * 180.02562 * 14 13 12 17 17 N 1.31637 * 119.99546 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 120.00206 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46685 * 90.00535 * 18 16 14 20 20 H 1.48504 * 109.46909 * 210.00325 * 18 16 14 21 21 H 1.48497 * 109.47171 * 330.00315 * 18 16 14 22 22 H 1.09000 * 109.46608 * 60.00642 * 1 2 3 23 23 H 1.09005 * 109.46948 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47422 * 300.00200 * 1 2 3 25 25 H 1.09005 * 109.47057 * 239.99360 * 2 1 3 26 26 H 1.09003 * 109.47135 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47130 * 299.99682 * 3 2 1 28 28 H 1.08996 * 109.47150 * 59.99633 * 3 2 1 29 29 H 1.07993 * 126.34451 * 0.02562 * 5 4 2 30 30 H 1.09002 * 109.46667 * 300.00106 * 10 9 8 31 31 H 1.09000 * 109.46986 * 60.00137 * 10 9 8 32 32 H 1.08991 * 109.47237 * 300.00022 * 11 10 9 33 33 H 1.09000 * 109.46995 * 60.00288 * 11 10 9 34 34 H 1.08991 * 109.47520 * 300.00211 * 12 11 10 35 35 H 1.09000 * 109.46796 * 60.00528 * 12 11 10 36 36 H 0.97000 * 119.99707 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7800 -0.3528 2.4998 6 7 2.3971 -1.2250 3.2456 7 7 3.0043 -2.0850 2.5083 8 6 2.8059 -1.8050 1.2411 9 16 3.4370 -2.6983 -0.1405 10 6 4.3560 -3.9990 0.7194 11 6 5.0099 -4.9256 -0.3076 12 6 5.7873 -6.0248 0.4194 13 16 6.5615 -7.1206 -0.7956 14 6 7.3644 -8.2571 0.2852 15 1 7.2797 -8.1366 1.3552 16 6 8.1066 -9.3066 -0.2385 17 7 8.7060 -10.1560 0.5690 18 14 8.2535 -9.5146 -2.0890 19 1 9.4357 -8.7614 -2.5793 20 1 8.4144 -10.9547 -2.4140 21 1 7.0274 -8.9931 -2.7446 22 1 -0.3632 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5140 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.1896 0.4823 2.8469 30 1 5.1265 -3.5472 1.3442 31 1 3.6727 -4.5743 1.3441 32 1 4.2392 -5.3774 -0.9320 33 1 5.6931 -4.3506 -0.9326 34 1 6.5580 -5.5728 1.0435 35 1 5.1044 -6.5999 1.0447 36 1 9.2244 -10.8897 0.2031 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075075310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:10 Heat of formation + Delta-G solvation = 35.513888 kcal Electronic energy + Delta-G solvation = -17285.762960 eV Core-core repulsion = 14443.426434 eV Total energy + Delta-G solvation = -2842.336527 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 287.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.94919 -37.65236 -35.80889 -34.68120 -32.53292 -31.78607 -28.63558 -28.26464 -27.81243 -25.00260 -23.78371 -22.95068 -21.74851 -19.63820 -18.92173 -17.30450 -17.25252 -17.09252 -16.56388 -16.54532 -16.09125 -15.49656 -15.21292 -14.91044 -14.39334 -14.13629 -13.98120 -13.80099 -13.50931 -13.21893 -13.02324 -13.00607 -12.56022 -12.52949 -12.26704 -12.15591 -12.06116 -11.83759 -11.71532 -11.37281 -11.33336 -11.15936 -11.05667 -10.59723 -8.99626 -8.77767 -8.51373 -6.23333 -0.05948 0.59917 0.89306 1.15040 1.33539 1.48760 1.60058 1.72599 1.75657 2.25512 2.66807 2.86591 3.42710 3.64925 3.80371 3.84619 3.88720 3.98530 4.05151 4.14272 4.27832 4.36217 4.59258 4.62706 4.68797 4.74516 4.76597 4.76775 4.95656 4.98911 5.13392 5.19091 5.19114 5.70110 5.79845 6.11180 6.92045 7.52903 8.61935 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.040177 B = 0.002750 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.756180 B =10178.523140 C =10673.617406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.120 3.880 3 C -0.158 4.158 4 N -0.456 5.456 5 C 0.178 3.822 6 N -0.339 5.339 7 N -0.336 5.336 8 C 0.145 3.855 9 S 0.029 5.971 10 C -0.092 4.092 11 C -0.075 4.075 12 C -0.069 4.069 13 S -0.208 6.208 14 C -0.525 4.525 15 H 0.049 0.951 16 C 0.035 3.965 17 N -0.924 5.924 18 Si 0.928 3.072 19 H -0.260 1.260 20 H -0.264 1.264 21 H -0.225 1.225 22 H 0.106 0.894 23 H 0.051 0.949 24 H 0.078 0.922 25 H 0.105 0.895 26 H 0.051 0.949 27 H 0.106 0.894 28 H 0.078 0.922 29 H 0.262 0.738 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.968 26.654 -6.132 33.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.018 3.982 3 C -0.216 4.216 4 N -0.150 5.150 5 C -0.113 4.113 6 N -0.177 5.177 7 N -0.180 5.180 8 C -0.231 4.231 9 S 0.257 5.743 10 C -0.243 4.243 11 C -0.115 4.115 12 C -0.219 4.219 13 S 0.020 5.980 14 C -0.672 4.672 15 H 0.067 0.933 16 C -0.169 4.169 17 N -0.562 5.562 18 Si 0.749 3.251 19 H -0.185 1.185 20 H -0.188 1.188 21 H -0.148 1.148 22 H 0.125 0.875 23 H 0.070 0.930 24 H 0.097 0.903 25 H 0.123 0.877 26 H 0.070 0.930 27 H 0.125 0.875 28 H 0.097 0.903 29 H 0.277 0.723 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.536 26.036 -7.164 32.753 hybrid contribution 0.324 -0.376 1.770 1.838 sum -18.212 25.660 -5.394 31.925 Atomic orbital electron populations 1.22194 0.90794 1.03151 1.05448 1.21979 0.97227 0.94866 0.84093 1.22192 1.01506 0.92441 1.05450 1.47177 1.37476 1.20896 1.09440 1.27324 1.02263 1.02454 0.79261 1.73863 1.11899 1.03869 1.28081 1.74634 1.22157 1.22414 0.98833 1.27129 1.01279 0.94485 1.00222 1.85135 1.60637 1.28338 1.00171 1.23510 1.02247 0.97383 1.01121 1.20989 0.99622 0.94270 0.96617 1.23073 1.01009 0.98030 0.99815 1.83718 1.65598 1.32762 1.15882 1.22356 1.36394 1.14564 0.93934 0.93295 1.25839 0.93250 0.93832 1.03996 1.70053 1.32523 1.15905 1.37698 0.85682 0.81626 0.78983 0.78852 1.18497 1.18838 1.14840 0.87540 0.93011 0.90333 0.87717 0.93010 0.87546 0.90326 0.72254 0.89017 0.89017 0.89356 0.89357 0.91393 0.91351 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.79 9.26 71.98 0.67 -0.12 16 2 C 0.12 1.07 3.60 44.99 0.16 1.23 16 3 C -0.16 -0.79 9.26 71.98 0.67 -0.12 16 4 N -0.46 -7.85 2.66 -505.26 -1.34 -9.19 16 5 C 0.18 3.13 11.91 179.77 2.14 5.27 16 6 N -0.34 -9.60 12.17 -59.32 -0.72 -10.32 16 7 N -0.34 -10.52 11.60 -56.85 -0.66 -11.18 16 8 C 0.15 3.58 8.07 179.55 1.45 5.03 16 9 S 0.03 0.62 21.46 -56.49 -1.21 -0.59 16 10 C -0.09 -2.38 5.23 71.98 0.38 -2.00 16 11 C -0.07 -2.11 5.22 30.60 0.16 -1.95 16 12 C -0.07 -2.62 5.67 71.98 0.41 -2.21 16 13 S -0.21 -9.87 19.41 -56.49 -1.10 -10.97 16 14 C -0.52 -31.24 10.04 67.96 0.68 -30.55 16 15 H 0.05 3.19 8.03 -2.91 -0.02 3.17 16 16 C 0.04 2.09 5.50 84.86 0.47 2.56 16 17 N -0.92 -57.56 13.97 21.65 0.30 -57.26 16 18 Si 0.93 43.99 27.74 68.60 1.90 45.90 16 19 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 20 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.23 -10.15 6.74 99.48 0.67 -9.48 16 22 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 23 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 24 H 0.08 0.23 7.99 -2.39 -0.02 0.21 16 25 H 0.10 1.01 7.33 -2.38 -0.02 0.99 16 26 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 28 H 0.08 0.23 7.98 -2.39 -0.02 0.21 16 29 H 0.26 1.71 8.06 -2.91 -0.02 1.69 16 30 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.09 2.52 8.14 -2.40 -0.02 2.50 16 32 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.07 2.64 8.14 -2.40 -0.02 2.62 16 35 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.28 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -76.48 332.85 5.37 -71.11 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: 1.02 Total: 5.37 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: 7.18 Total: -22.86 kcal Atomic # 7 Polarization: -85.54 SS G_CDS: -2.42 Total: -87.96 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.90 Total: 45.90 kcal Atomic # 16 Polarization: -9.25 SS G_CDS: -2.31 Total: -11.56 kcal Total: -76.48 5.37 -71.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075075310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.624 kcal (2) G-P(sol) polarization free energy of solvation -76.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds