Wall clock time and date at job start Tue Mar 31 2020 06:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48498 * 109.46807 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46906 * 120.00270 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00008 * 3 2 1 7 7 C 1.38805 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99910 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99766 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99894 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46896 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00232 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99423 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99634 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.46919 * 325.00026 * 14 13 11 16 16 C 1.53004 * 109.47002 * 85.00200 * 14 13 11 17 17 C 1.52997 * 109.47187 * 59.99802 * 16 14 13 18 18 C 1.53001 * 109.47065 * 60.00193 * 17 16 14 19 19 C 1.53004 * 109.46960 * 299.99946 * 18 17 16 20 20 C 1.52997 * 109.47187 * 60.00128 * 19 18 17 21 21 H 1.09002 * 109.47055 * 59.99879 * 20 19 18 22 22 C 1.50695 * 109.46889 * 180.02562 * 20 19 18 23 23 O 1.20824 * 120.00145 * 120.00159 * 22 20 19 24 24 O 1.34232 * 119.99759 * 299.99307 * 22 20 19 25 25 H 0.97001 * 119.99662 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46895 * 300.00170 * 10 9 7 27 27 H 1.09003 * 109.47006 * 60.00004 * 10 9 7 28 28 H 0.96994 * 120.00530 * 359.97438 * 13 11 10 29 29 H 1.08995 * 109.47261 * 180.02562 * 16 14 13 30 30 H 1.09007 * 109.46708 * 300.00046 * 16 14 13 31 31 H 1.09002 * 109.47055 * 300.00121 * 17 16 14 32 32 H 1.09003 * 109.46991 * 180.02562 * 17 16 14 33 33 H 1.09003 * 109.46814 * 180.02562 * 18 17 16 34 34 H 1.08995 * 109.46869 * 59.99862 * 18 17 16 35 35 H 1.09001 * 109.46698 * 300.00062 * 19 18 17 36 36 H 1.08998 * 109.46949 * 179.97438 * 19 18 17 37 37 H 0.96706 * 116.99986 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1041 1.6963 1.2125 6 1 3.1041 1.6964 -1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3431 0.0003 14 6 2.3303 -7.7151 0.0003 15 1 1.4144 -7.7601 0.5894 16 6 2.0343 -8.1488 -1.4369 17 6 3.3200 -8.0856 -2.2637 18 6 4.3653 -9.0217 -1.6537 19 6 4.6613 -8.5880 -0.2165 20 6 3.3756 -8.6512 0.6104 21 1 2.9933 -9.6720 0.6103 22 6 3.6671 -8.2234 2.0256 23 8 3.0971 -7.2684 2.4977 24 8 4.5598 -8.9036 2.7619 25 1 -0.4850 0.8401 0.0004 26 1 3.1244 -3.7314 -0.8895 27 1 3.1245 -3.7314 0.8906 28 1 3.8008 -6.1836 0.0006 29 1 1.6516 -9.1694 -1.4369 30 1 1.2896 -7.4818 -1.8715 31 1 3.7023 -7.0648 -2.2637 32 1 3.1090 -8.3941 -3.2877 33 1 5.2814 -8.9763 -2.2425 34 1 3.9830 -10.0424 -1.6537 35 1 5.0435 -7.5672 -0.2165 36 1 5.4056 -9.2551 0.2183 37 1 4.7132 -8.5919 3.6644 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085323721.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:38 Heat of formation + Delta-G solvation = -145.900239 kcal Electronic energy + Delta-G solvation = -20955.672310 eV Core-core repulsion = 17630.423454 eV Total energy + Delta-G solvation = -3325.248856 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.07347 -39.32890 -37.68846 -36.26038 -33.44927 -32.37941 -31.60801 -30.58301 -28.37423 -25.44214 -24.52498 -22.95045 -21.55669 -20.81476 -19.08930 -18.16346 -17.85853 -17.03976 -16.38687 -15.95264 -15.68448 -15.14739 -14.79539 -14.76250 -14.13506 -14.04543 -13.83363 -13.19105 -12.84835 -12.83803 -12.72347 -12.46040 -12.29228 -11.86969 -11.71094 -11.56416 -11.03704 -10.99942 -10.99529 -10.83720 -10.72454 -10.45591 -10.36935 -9.76874 -9.27051 -9.01528 -8.76184 -8.17084 -6.43234 -6.16723 -3.86356 2.03742 2.76465 3.09942 3.24596 3.26684 3.30503 3.35237 3.78750 4.17918 4.25456 4.37770 4.50014 4.79660 4.93016 4.96739 5.08993 5.14092 5.18131 5.25917 5.34386 5.38158 5.57478 5.65757 5.71051 5.75042 5.89727 5.98552 6.01458 6.14366 6.15880 6.22679 6.31953 6.74070 7.63824 7.71472 7.81029 8.39822 8.75161 9.28305 10.90692 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.024319 B = 0.003872 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.109805 B = 7229.550845 C = 7578.677364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.283 1.283 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.071 0.929 9 S -0.059 6.059 10 C -0.152 4.152 11 C 0.540 3.460 12 O -0.518 6.518 13 N -0.724 5.724 14 C 0.164 3.836 15 H 0.096 0.904 16 C -0.130 4.130 17 C -0.123 4.123 18 C -0.117 4.117 19 C -0.112 4.112 20 C -0.086 4.086 21 H 0.120 0.880 22 C 0.472 3.528 23 O -0.489 6.489 24 O -0.521 6.521 25 H 0.268 0.732 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.392 0.608 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.045 -21.390 -0.864 24.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.208 1.208 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.684 4.684 8 H 0.089 0.911 9 S 0.168 5.832 10 C -0.303 4.303 11 C 0.327 3.673 12 O -0.393 6.393 13 N -0.378 5.378 14 C 0.058 3.942 15 H 0.114 0.886 16 C -0.169 4.169 17 C -0.160 4.160 18 C -0.154 4.154 19 C -0.150 4.150 20 C -0.105 4.105 21 H 0.138 0.862 22 C 0.312 3.688 23 O -0.374 6.374 24 O -0.333 6.333 25 H 0.078 0.922 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.227 0.773 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 9.626 -21.467 -1.127 23.553 hybrid contribution 2.577 1.554 0.744 3.100 sum 12.203 -19.912 -0.382 23.357 Atomic orbital electron populations 1.70014 1.05937 1.27477 1.46930 1.24980 0.95006 0.98949 0.94596 0.86238 0.79244 0.81329 0.78763 1.20819 1.19974 1.19974 1.22839 0.94868 0.91794 1.58866 0.91073 1.85365 1.05000 0.96150 1.96683 1.23514 1.06475 0.95628 1.04661 1.20150 0.86472 0.86087 0.74636 1.90676 1.15340 1.85510 1.47740 1.45904 1.09507 1.04818 1.77574 1.20653 0.96223 0.80962 0.96317 0.88625 1.21947 0.98369 1.02003 0.94554 1.21554 0.95181 1.00281 0.99015 1.21551 0.99529 0.99698 0.94645 1.21553 0.95080 1.02763 0.95581 1.21410 0.98825 1.02566 0.87746 0.86193 1.23440 0.76101 0.80534 0.88724 1.90855 1.47864 1.26460 1.72230 1.84508 1.58850 1.59064 1.30911 0.92184 0.89494 0.89403 0.77304 0.91003 0.90183 0.91416 0.91602 0.91278 0.91482 0.91352 0.90179 0.73194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.68 13.22 55.49 0.73 -25.94 16 2 C 0.07 2.15 5.49 -17.43 -0.10 2.05 16 3 Si 0.92 21.80 29.55 -169.99 -5.02 16.78 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.54 -15.65 9.50 30.94 0.29 -15.36 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.25 6.16 36.01 0.22 -3.03 16 11 C 0.54 10.63 7.81 -10.98 -0.09 10.55 16 12 O -0.52 -12.18 15.52 5.56 0.09 -12.09 16 13 N -0.72 -10.30 3.03 -53.80 -0.16 -10.46 16 14 C 0.16 1.96 1.78 -67.93 -0.12 1.84 16 15 H 0.10 1.41 7.53 -51.93 -0.39 1.02 16 16 C -0.13 -1.33 5.60 -26.73 -0.15 -1.48 16 17 C -0.12 -1.03 5.77 -26.73 -0.15 -1.19 16 18 C -0.12 -0.73 5.92 -26.73 -0.16 -0.89 16 19 C -0.11 -0.77 4.96 -26.73 -0.13 -0.90 16 20 C -0.09 -0.74 2.43 -91.77 -0.22 -0.96 16 21 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 22 C 0.47 5.00 7.46 36.00 0.27 5.27 16 23 O -0.49 -7.44 15.96 -18.75 -0.30 -7.74 16 24 O -0.52 -4.02 13.33 -39.26 -0.52 -4.54 16 25 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 26 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 27 H 0.09 1.80 8.14 -51.91 -0.42 1.38 16 28 H 0.39 4.71 6.87 -40.82 -0.28 4.43 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.07 0.66 7.60 -51.93 -0.39 0.26 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.50 6.51 -51.93 -0.34 0.16 16 36 H 0.08 0.47 8.11 -51.93 -0.42 0.05 16 37 H 0.41 1.78 9.10 45.56 0.41 2.20 16 LS Contribution 322.37 15.07 4.86 4.86 Total: -1.00 -37.19 322.37 -7.22 -44.40 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -4.34 Total: 2.70 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -0.34 Total: -4.10 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.57 Total: -36.41 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.74 Total: -24.38 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -37.19 -7.22 -44.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085323721.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.500 kcal (2) G-P(sol) polarization free energy of solvation -37.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds