Wall clock time and date at job start Tue Mar 31 2020 05:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47614 * 2 1 4 4 N 1.46508 * 109.46988 * 239.99657 * 2 1 3 5 5 C 1.34779 * 119.99844 * 85.00186 * 4 2 1 6 6 O 1.21690 * 119.99708 * 0.02562 * 5 4 2 7 7 C 1.46367 * 119.99607 * 180.02562 * 5 4 2 8 8 H 1.07995 * 120.00779 * 0.02562 * 7 5 4 9 9 C 1.40054 * 119.99466 * 180.02562 * 7 5 4 10 10 N 1.30666 * 120.00346 * 359.97438 * 9 7 5 11 11 Si 1.86801 * 119.99594 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47452 * 60.00178 * 11 9 7 13 13 H 1.48501 * 109.46932 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47120 * 299.99442 * 11 9 7 15 15 C 1.50707 * 109.47356 * 119.99992 * 2 1 3 16 16 C 1.38255 * 119.99843 * 79.97118 * 15 2 1 17 17 C 1.38215 * 119.99743 * 179.97438 * 16 15 2 18 18 C 1.38256 * 120.00058 * 0.02562 * 17 16 15 19 19 C 1.38208 * 120.00010 * 359.79901 * 18 17 16 20 20 C 1.50698 * 120.00333 * 180.23718 * 19 18 17 21 21 F 1.39904 * 109.46894 * 270.19609 * 20 19 18 22 22 F 1.39902 * 109.46904 * 30.19010 * 20 19 18 23 23 F 1.39899 * 109.47458 * 150.19405 * 20 19 18 24 24 C 1.38212 * 119.99857 * 260.00110 * 15 2 1 25 25 H 1.09002 * 109.46774 * 300.00556 * 1 2 3 26 26 H 1.08997 * 109.47198 * 59.99962 * 1 2 3 27 27 H 1.09002 * 109.47242 * 180.02562 * 1 2 3 28 28 H 0.96994 * 119.99652 * 265.00291 * 4 2 1 29 29 H 0.96999 * 120.00203 * 179.97438 * 10 9 7 30 30 H 1.08005 * 120.00210 * 0.02562 * 16 15 2 31 31 H 1.08001 * 119.99686 * 180.02562 * 17 16 15 32 32 H 1.07998 * 120.00044 * 180.02562 * 18 17 16 33 33 H 1.08002 * 119.99812 * 359.97106 * 24 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1470 -0.0184 -2.3572 6 8 1.8581 1.1625 -2.4117 7 6 2.6344 -0.7086 -3.5524 8 1 2.8904 -1.7567 -3.5041 9 6 2.7686 -0.0098 -4.7587 10 7 2.4584 1.2581 -4.8173 11 14 3.3899 -0.8909 -6.2842 12 1 2.4723 -2.0097 -6.6179 13 1 3.4401 0.0633 -7.4209 14 1 4.7507 -1.4267 -6.0267 15 6 2.0324 -0.7104 1.2305 16 6 2.0663 -2.0921 1.2656 17 6 2.5275 -2.7436 2.3939 18 6 2.9546 -2.0137 3.4876 19 6 2.9241 -0.6324 3.4512 20 6 3.3946 0.1634 4.6413 21 9 2.3177 0.3918 5.5047 22 9 4.3899 -0.5515 5.3163 23 9 3.9128 1.3885 4.2079 24 6 2.4587 0.0193 2.3241 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 2.2489 -1.6318 -1.1525 29 1 2.5517 1.7422 -5.6527 30 1 1.7330 -2.6624 0.4110 31 1 2.5544 -3.8230 2.4211 32 1 3.3154 -2.5227 4.3691 33 1 2.4322 1.0987 2.2966 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153485607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:15 Heat of formation + Delta-G solvation = -193.421446 kcal Electronic energy + Delta-G solvation = -22166.419731 eV Core-core repulsion = 18161.809509 eV Total energy + Delta-G solvation = -4004.610222 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -51.20693 -48.72674 -48.66977 -40.89120 -39.23819 -36.22858 -34.55171 -32.83332 -32.45402 -30.33184 -28.18834 -27.07875 -24.94772 -23.41033 -22.49051 -21.10321 -19.67418 -19.53389 -19.38344 -18.72946 -17.53507 -17.22582 -16.67247 -16.20683 -15.72608 -15.58170 -15.38468 -15.17515 -15.11387 -15.05921 -14.87830 -14.83465 -14.55684 -14.26896 -14.00133 -13.66673 -13.40121 -13.23192 -12.99360 -12.71633 -12.59744 -12.54994 -12.22725 -12.03439 -11.82669 -10.90748 -10.22916 -10.00183 -9.79173 -9.49500 -8.27448 -6.84183 -0.08482 0.21668 1.41607 1.44760 1.56300 1.61386 2.25277 2.44037 2.50469 2.66915 2.95216 3.14645 3.38840 3.56683 3.67312 3.83750 4.04595 4.20589 4.26394 4.38992 4.48864 4.64659 4.77345 4.86919 4.97192 5.11821 5.24034 5.32050 5.33744 5.44064 5.76528 5.89229 6.23720 6.28092 6.88483 7.55489 8.51050 8.68997 Molecular weight = 287.09amu Principal moments of inertia in cm(-1) A = 0.027620 B = 0.003605 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.509990 B = 7764.990697 C = 7896.037772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.188 3.812 3 H 0.051 0.949 4 N -0.747 5.747 5 C 0.541 3.459 6 O -0.629 6.629 7 C -0.574 4.574 8 H 0.089 0.911 9 C 0.030 3.970 10 N -0.822 5.822 11 Si 0.996 3.004 12 H -0.253 1.253 13 H -0.277 1.277 14 H -0.255 1.255 15 C -0.089 4.089 16 C -0.082 4.082 17 C -0.105 4.105 18 C -0.073 4.073 19 C -0.190 4.190 20 C 0.513 3.487 21 F -0.179 7.179 22 F -0.175 7.175 23 F -0.185 7.185 24 C -0.077 4.077 25 H 0.074 0.926 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.394 0.606 29 H 0.274 0.726 30 H 0.144 0.856 31 H 0.172 0.828 32 H 0.160 0.840 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.869 -10.383 17.060 19.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.082 3.918 3 H 0.069 0.931 4 N -0.402 5.402 5 C 0.345 3.655 6 O -0.516 6.516 7 C -0.610 4.610 8 H 0.107 0.893 9 C -0.185 4.185 10 N -0.452 5.452 11 Si 0.816 3.184 12 H -0.177 1.177 13 H -0.202 1.202 14 H -0.179 1.179 15 C -0.090 4.090 16 C -0.100 4.100 17 C -0.122 4.122 18 C -0.091 4.091 19 C -0.191 4.191 20 C 0.459 3.541 21 F -0.160 7.160 22 F -0.156 7.156 23 F -0.166 7.166 24 C -0.095 4.095 25 H 0.093 0.907 26 H 0.049 0.951 27 H 0.090 0.910 28 H 0.230 0.770 29 H 0.084 0.916 30 H 0.162 0.838 31 H 0.190 0.810 32 H 0.178 0.822 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.649 -9.333 16.978 19.385 hybrid contribution 0.326 0.204 -0.549 0.670 sum 0.975 -9.129 16.429 18.820 Atomic orbital electron populations 1.22056 0.94477 1.02505 1.01218 1.19399 0.94187 0.95334 0.82841 0.93124 1.45926 1.72249 1.13325 1.08683 1.18568 0.77540 0.86050 0.83360 1.90560 1.56881 1.18544 1.85663 1.21405 1.47302 0.98305 0.93995 0.89316 1.26946 0.92789 0.95101 1.03700 1.70179 1.36611 1.10555 1.27814 0.85094 0.79718 0.78380 0.75251 1.17697 1.20167 1.17901 1.19912 0.99727 0.94994 0.94329 1.21464 0.96220 0.92995 0.99331 1.21499 0.97269 1.02060 0.91397 1.21274 0.96335 0.91037 1.00407 1.19951 1.09258 0.95822 0.94113 1.18286 0.75102 0.77618 0.83123 1.93217 1.55671 1.94850 1.72291 1.93183 1.62535 1.77885 1.81990 1.93191 1.87371 1.46412 1.89653 1.20794 0.96194 1.00612 0.91943 0.90683 0.95054 0.91008 0.77046 0.91647 0.83835 0.81031 0.82243 0.85423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.91 9.46 71.98 0.68 -4.23 16 2 C 0.19 7.05 2.78 44.25 0.12 7.17 16 3 H 0.05 2.26 7.44 -2.39 -0.02 2.24 16 4 N -0.75 -32.13 5.02 -450.38 -2.26 -34.39 16 5 C 0.54 30.69 7.71 86.36 0.67 31.36 16 6 O -0.63 -41.63 14.68 -4.32 -0.06 -41.70 16 7 C -0.57 -31.83 9.54 24.83 0.24 -31.60 16 8 H 0.09 4.35 7.85 -2.91 -0.02 4.33 16 9 C 0.03 1.64 5.50 85.31 0.47 2.11 16 10 N -0.82 -50.10 11.83 21.84 0.26 -49.84 16 11 Si 1.00 40.30 29.56 68.60 2.03 42.33 16 12 H -0.25 -9.55 7.11 99.48 0.71 -8.85 16 13 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 14 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 15 C -0.09 -2.54 4.95 -19.86 -0.10 -2.64 16 16 C -0.08 -1.82 9.06 22.27 0.20 -1.62 16 17 C -0.10 -1.73 10.05 22.27 0.22 -1.51 16 18 C -0.07 -1.29 9.40 22.27 0.21 -1.08 16 19 C -0.19 -4.36 5.45 -19.87 -0.11 -4.46 16 20 C 0.51 11.63 3.36 71.24 0.24 11.87 16 21 F -0.18 -4.08 17.30 44.97 0.78 -3.30 16 22 F -0.17 -3.69 16.47 44.97 0.74 -2.95 16 23 F -0.18 -4.75 16.46 44.97 0.74 -4.01 16 24 C -0.08 -2.08 9.02 22.27 0.20 -1.88 16 25 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.39 14.28 6.85 -92.71 -0.64 13.64 16 29 H 0.27 15.18 8.29 -92.71 -0.77 14.41 16 30 H 0.14 2.86 6.92 -2.91 -0.02 2.84 16 31 H 0.17 1.58 8.06 -2.91 -0.02 1.55 16 32 H 0.16 1.97 7.61 -2.91 -0.02 1.95 16 33 H 0.13 3.54 7.58 -2.91 -0.02 3.52 16 Total: -1.00 -74.24 303.95 5.79 -68.44 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 0.53 Total: 21.94 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 3.04 Total: 3.48 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -2.00 Total: -84.24 kcal Atomic # 8 Polarization: -41.63 SS G_CDS: -0.06 Total: -41.70 kcal Atomic # 9 Polarization: -12.51 SS G_CDS: 2.26 Total: -10.25 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Total: -74.24 5.79 -68.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153485607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.980 kcal (2) G-P(sol) polarization free energy of solvation -74.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds