Wall clock time and date at job start Tue Mar 31 2020 06:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99545 * 2 1 4 4 H 1.48504 * 109.46964 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47255 * 299.99914 * 3 2 1 6 6 H 1.48506 * 109.47231 * 60.00317 * 3 2 1 7 7 C 1.37879 * 120.00417 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99891 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99680 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46926 * 179.97438 * 9 7 2 11 11 O 1.45201 * 109.47190 * 180.02562 * 10 9 7 12 12 C 1.34768 * 117.00152 * 179.97438 * 11 10 9 13 13 O 1.21530 * 119.99962 * 0.02562 * 12 11 10 14 14 C 1.47326 * 120.00161 * 180.02562 * 12 11 10 15 15 C 1.36313 * 126.37420 * 179.71735 * 14 12 11 16 16 O 1.34251 * 107.10956 * 179.83789 * 15 14 12 17 17 C 1.34478 * 108.18426 * 0.42610 * 16 15 14 18 18 C 1.47887 * 125.47776 * 179.74924 * 17 16 15 19 19 C 1.39547 * 120.13882 * 179.69780 * 18 17 16 20 20 C 1.37968 * 119.84859 * 179.74936 * 19 18 17 21 21 C 1.38346 * 120.14551 * 0.52668 * 20 19 18 22 22 C 1.38355 * 120.28723 * 359.75156 * 21 20 19 23 23 C 1.37964 * 120.13848 * 359.96764 * 22 21 20 24 24 N 1.30874 * 109.04374 * 359.72997 * 17 16 15 25 25 H 0.96991 * 120.00434 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47413 * 60.00134 * 9 7 2 27 27 H 1.08994 * 109.47632 * 300.00029 * 9 7 2 28 28 H 1.08999 * 109.47200 * 60.00326 * 10 9 7 29 29 H 1.08999 * 109.47126 * 299.99714 * 10 9 7 30 30 H 1.07993 * 126.44438 * 359.96476 * 15 14 12 31 31 H 1.08002 * 120.07075 * 359.97438 * 19 18 17 32 32 H 1.08004 * 119.92381 * 180.29610 * 20 19 18 33 33 H 1.08000 * 119.85697 * 179.76399 * 21 20 19 34 34 H 1.07993 * 119.92711 * 180.02562 * 22 21 20 35 35 H 1.08004 * 120.06917 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0047 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0015 11 8 1.5196 -4.9195 0.0020 12 6 2.2536 -6.0497 0.0013 13 8 3.4673 -5.9861 0.0008 14 6 1.5849 -7.3625 0.0012 15 6 2.1958 -8.5810 -0.0049 16 8 1.2259 -9.5092 0.0011 17 6 0.0394 -8.8763 0.0011 18 6 -1.2847 -9.5349 0.0015 19 6 -2.4495 -8.7665 0.0079 20 6 -3.6817 -9.3871 0.0030 21 6 -3.7640 -10.7682 0.0027 22 6 -2.6129 -11.5357 0.0022 23 6 -1.3747 -10.9274 0.0013 24 7 0.2448 -7.5838 0.0012 25 1 -0.4850 0.8399 -0.0004 26 1 0.6242 -2.5575 -0.8880 27 1 0.6249 -2.5563 0.8919 28 1 2.8728 -3.6039 0.8909 29 1 2.8714 -3.6046 -0.8891 30 1 3.2599 -8.7651 -0.0110 31 1 -2.3865 -7.6883 0.0130 32 1 -4.5840 -8.7935 0.0031 33 1 -4.7310 -11.2491 0.0027 34 1 -2.6839 -12.6133 0.0016 35 1 -0.4768 -11.5277 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172425796.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:16 Heat of formation + Delta-G solvation = -42.737461 kcal Electronic energy + Delta-G solvation = -20648.290129 eV Core-core repulsion = 17192.070796 eV Total energy + Delta-G solvation = -3456.219333 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.099 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.61664 -39.78922 -39.32809 -36.17240 -35.12931 -33.31727 -32.69677 -31.31806 -30.31071 -29.42380 -25.73054 -24.34594 -24.01808 -22.83602 -21.53406 -20.92389 -20.43796 -18.49984 -17.40297 -17.10097 -16.73146 -16.19520 -16.01934 -15.82286 -15.69502 -15.10345 -14.50256 -14.14880 -13.80903 -13.77357 -13.35507 -13.25100 -12.81151 -12.35326 -11.84390 -11.62975 -11.47557 -11.23456 -11.03888 -10.91238 -10.77373 -10.77047 -10.46698 -10.11340 -9.65163 -9.64712 -9.33281 -9.27043 -8.63371 -8.42682 -6.08258 -4.12760 0.31638 1.02341 1.04533 2.05151 2.19847 2.89950 3.13227 3.28918 3.36114 3.40872 3.49970 3.61789 4.39961 4.43853 4.58192 4.61849 4.74514 4.95583 5.03829 5.10582 5.19350 5.28182 5.36125 5.49111 5.65836 5.73522 6.03762 6.06911 6.08277 6.08713 6.14968 6.52560 6.63430 6.84389 7.25006 7.58178 7.65420 7.87591 8.11991 8.25700 8.93034 9.51422 11.03297 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.022350 B = 0.002937 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.479830 B = 9530.766960 C =10762.797447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.025 3.975 10 C 0.074 3.926 11 O -0.333 6.333 12 C 0.546 3.454 13 O -0.510 6.510 14 C -0.041 4.041 15 C 0.021 3.979 16 O -0.190 6.190 17 C 0.234 3.766 18 C -0.019 4.019 19 C -0.066 4.066 20 C -0.120 4.120 21 C -0.100 4.100 22 C -0.124 4.124 23 C -0.089 4.089 24 N -0.423 5.423 25 H 0.263 0.737 26 H 0.029 0.971 27 H 0.029 0.971 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.238 0.762 31 H 0.144 0.856 32 H 0.134 0.866 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.878 -25.290 -0.006 25.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.001 3.999 11 O -0.247 6.247 12 C 0.389 3.611 13 O -0.400 6.400 14 C -0.161 4.161 15 C -0.052 4.052 16 O -0.076 6.076 17 C 0.028 3.972 18 C -0.021 4.021 19 C -0.086 4.086 20 C -0.138 4.138 21 C -0.119 4.119 22 C -0.142 4.142 23 C -0.109 4.109 24 N -0.152 5.152 25 H 0.072 0.928 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.254 0.746 31 H 0.162 0.838 32 H 0.152 0.848 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.136 -24.614 -0.004 25.145 hybrid contribution 1.231 0.558 0.001 1.352 sum -3.904 -24.056 -0.002 24.371 Atomic orbital electron populations 1.69988 1.06086 1.26865 1.49801 1.24991 0.94917 0.99387 0.94900 0.86416 0.80035 0.83165 0.77688 1.19594 1.20833 1.20837 1.21009 0.93199 0.90044 1.52121 0.92168 1.19178 0.94177 0.88821 0.99080 1.23772 0.96542 0.78427 1.01133 1.86701 1.41266 1.15123 1.81658 1.19400 0.84630 0.83958 0.73100 1.90856 1.14086 1.87978 1.47093 1.20866 0.89566 0.93404 1.12262 1.25375 0.94635 0.85406 0.99834 1.84425 1.15546 1.38238 1.69376 1.23901 0.85928 0.85694 1.01721 1.17279 0.85827 0.92687 1.06273 1.21341 0.90483 1.01280 0.95451 1.21180 0.97550 0.94813 1.00260 1.21402 0.98787 0.94072 0.97635 1.21065 0.91858 1.00282 1.00981 1.21225 0.98797 0.92730 0.98099 1.71152 1.15197 1.13606 1.15236 0.92760 0.95220 0.95218 0.92026 0.92031 0.74614 0.83826 0.84814 0.85430 0.85218 0.85094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.53 -15.00 9.11 -34.44 -0.31 -15.31 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 9 C 0.02 0.66 5.35 -27.88 -0.15 0.51 16 10 C 0.07 1.70 5.42 37.16 0.20 1.90 16 11 O -0.33 -7.29 10.23 -40.68 -0.42 -7.70 16 12 C 0.55 10.45 7.96 34.43 0.27 10.72 16 13 O -0.51 -10.12 16.68 -19.29 -0.32 -10.44 16 14 C -0.04 -0.66 7.03 -83.10 -0.58 -1.24 16 15 C 0.02 0.25 11.94 30.04 0.36 0.60 16 16 O -0.19 -2.20 10.45 5.37 0.06 -2.14 16 17 C 0.23 3.09 7.88 -14.01 -0.11 2.98 16 18 C -0.02 -0.21 5.87 -104.97 -0.62 -0.83 16 19 C -0.07 -0.69 9.68 -39.19 -0.38 -1.07 16 20 C -0.12 -0.96 10.03 -39.64 -0.40 -1.36 16 21 C -0.10 -0.67 10.04 -39.50 -0.40 -1.07 16 22 C -0.12 -0.83 10.03 -39.64 -0.40 -1.23 16 23 C -0.09 -0.75 9.71 -39.20 -0.38 -1.13 16 24 N -0.42 -6.90 10.96 -8.28 -0.09 -6.99 16 25 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.24 1.83 8.06 -52.49 -0.42 1.41 16 31 H 0.14 1.64 7.82 -52.49 -0.41 1.23 16 32 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 33 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 34 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 35 H 0.13 0.90 7.89 -52.48 -0.41 0.48 16 LS Contribution 324.53 15.07 4.89 4.89 Total: -1.00 -33.54 324.53 -6.90 -40.44 By element: Atomic # 1 Polarization: -0.02 SS G_CDS: -3.75 Total: -3.77 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -2.99 Total: -4.89 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.65 Total: -32.97 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.68 Total: -20.28 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.54 -6.90 -40.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172425796.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.295 kcal (2) G-P(sol) polarization free energy of solvation -33.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds