Wall clock time and date at job start Tue Mar 31 2020 06:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00488 * 2 1 4 4 H 1.48503 * 109.47217 * 239.99492 * 3 2 1 5 5 H 1.48497 * 109.46972 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47353 * 119.99212 * 3 2 1 7 7 C 1.38704 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00438 * 180.02562 * 7 2 1 9 9 O 1.34815 * 119.99765 * 0.02562 * 7 2 1 10 10 C 1.35520 * 117.00282 * 185.06035 * 9 7 2 11 11 C 1.38837 * 120.15759 * 354.39868 * 10 9 7 12 12 C 1.38018 * 120.07003 * 179.97438 * 11 10 9 13 13 C 1.38567 * 120.40580 * 359.97438 * 12 11 10 14 14 C 1.37827 * 120.32166 * 0.02562 * 13 12 11 15 15 C 1.39667 * 119.91968 * 359.97438 * 14 13 12 16 16 C 1.47538 * 120.19893 * 180.02562 * 15 14 13 17 17 O 1.21590 * 120.00407 * 179.97438 * 16 15 14 18 18 N 1.34775 * 119.99618 * 0.02562 * 16 15 14 19 19 C 1.46508 * 119.99760 * 180.02562 * 18 16 15 20 20 C 1.50700 * 109.46981 * 179.97438 * 19 18 16 21 21 C 1.41386 * 126.58326 * 89.99635 * 20 19 18 22 22 C 1.34510 * 106.84182 * 179.97438 * 21 20 19 23 23 O 1.34306 * 108.42208 * 0.02562 * 22 21 20 24 24 C 1.34310 * 109.47451 * 359.76645 * 23 22 21 25 25 H 0.97008 * 119.99558 * 0.02562 * 1 2 3 26 26 H 1.08005 * 119.96031 * 359.97438 * 11 10 9 27 27 H 1.08005 * 119.79866 * 180.27313 * 12 11 10 28 28 H 1.08006 * 119.84379 * 180.02562 * 13 12 11 29 29 H 1.08005 * 120.04177 * 180.02562 * 14 13 12 30 30 H 0.97000 * 120.00456 * 359.97438 * 18 16 15 31 31 H 1.09003 * 109.46668 * 299.99421 * 19 18 16 32 32 H 1.08996 * 109.47230 * 59.99188 * 19 18 16 33 33 H 1.07996 * 126.57590 * 359.92750 * 21 20 19 34 34 H 1.08002 * 125.78946 * 179.97438 * 22 21 20 35 35 H 1.07995 * 125.78790 * 180.23828 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6962 -1.2124 5 1 1.2844 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0086 -1.2012 0.0005 8 1 3.0886 -1.2013 0.0010 9 8 1.3345 -2.3687 0.0005 10 6 2.0684 -3.5030 0.1076 11 6 3.4552 -3.4403 0.0940 12 6 4.2009 -4.5966 0.2037 13 6 3.5741 -5.8261 0.3284 14 6 2.1983 -5.9073 0.3437 15 6 1.4305 -4.7458 0.2337 16 6 -0.0426 -4.8256 0.2499 17 8 -0.7075 -3.8121 0.1543 18 7 -0.6513 -6.0219 0.3718 19 6 -2.1141 -6.1013 0.3873 20 6 -2.5376 -7.5403 0.5316 21 6 -2.7683 -8.2335 1.7421 22 6 -3.1271 -9.4869 1.4112 23 8 -3.1253 -9.5893 0.0721 24 6 -2.7732 -8.4105 -0.4667 25 1 -0.4850 0.8402 -0.0004 26 1 3.9511 -2.4857 -0.0024 27 1 5.2795 -4.5423 0.1971 28 1 4.1664 -6.7251 0.4140 29 1 1.7144 -6.8680 0.4415 30 1 -0.1209 -6.8304 0.4484 31 1 -2.5004 -5.5226 1.2264 32 1 -2.5098 -5.6981 -0.5448 33 1 -2.6739 -7.8335 2.7408 34 1 -3.3738 -10.2772 2.1048 35 1 -2.6911 -8.1979 -1.5223 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194156708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:41 Heat of formation + Delta-G solvation = -12.802540 kcal Electronic energy + Delta-G solvation = -21497.608570 eV Core-core repulsion = 18042.687312 eV Total energy + Delta-G solvation = -3454.921258 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.69438 -39.54330 -38.04723 -36.32152 -34.95527 -32.61890 -32.31482 -30.66541 -29.63495 -28.90422 -26.26400 -25.28715 -22.86115 -21.72214 -21.41211 -20.49783 -19.85487 -18.13945 -17.91513 -17.12265 -16.18285 -16.02217 -15.30272 -14.84918 -14.67806 -14.56492 -14.16991 -14.10183 -13.73321 -13.66447 -12.94816 -12.88295 -12.64348 -12.48760 -12.14404 -11.74101 -11.70035 -11.27735 -11.11353 -10.87270 -10.78231 -10.46724 -10.02444 -9.55434 -8.94090 -8.86256 -8.62896 -8.53020 -8.25093 -7.29521 -6.42957 -4.03051 1.59521 1.73475 2.33488 2.36652 2.98574 3.12609 3.14754 3.17176 3.77213 3.94157 3.95300 4.63987 4.66468 4.75387 4.97107 5.08328 5.19413 5.44344 5.49377 5.55263 5.57865 5.72707 5.88199 5.97580 6.10570 6.13163 6.13592 6.33842 6.57932 6.70640 6.92531 6.95357 6.96941 7.07673 7.25364 7.30507 7.70927 7.93638 8.16336 8.96472 9.12106 9.69081 10.70789 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.020694 B = 0.003984 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.725773 B = 7027.017558 C = 8184.327626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.045 3.955 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.405 4.405 8 H 0.093 0.907 9 O -0.124 6.124 10 C 0.189 3.811 11 C -0.238 4.238 12 C -0.051 4.051 13 C -0.231 4.231 14 C -0.038 4.038 15 C -0.227 4.227 16 C 0.554 3.446 17 O -0.502 6.502 18 N -0.740 5.740 19 C 0.194 3.806 20 C -0.194 4.194 21 C -0.198 4.198 22 C -0.048 4.048 23 O -0.178 6.178 24 C -0.022 4.022 25 H 0.272 0.728 26 H 0.132 0.868 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.393 0.607 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.149 0.851 34 H 0.202 0.798 35 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.233 -15.873 1.530 15.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.481 4.481 8 H 0.111 0.889 9 O -0.022 6.022 10 C 0.130 3.870 11 C -0.257 4.257 12 C -0.069 4.069 13 C -0.250 4.250 14 C -0.057 4.057 15 C -0.231 4.231 16 C 0.343 3.657 17 O -0.376 6.376 18 N -0.397 5.397 19 C 0.070 3.930 20 C -0.196 4.196 21 C -0.217 4.217 22 C -0.115 4.115 23 O -0.074 6.074 24 C -0.090 4.090 25 H 0.082 0.918 26 H 0.149 0.851 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.227 0.773 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.167 0.833 34 H 0.218 0.782 35 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -2.303 -15.079 1.273 15.307 hybrid contribution 0.894 0.467 0.242 1.038 sum -1.409 -14.612 1.516 14.758 Atomic orbital electron populations 1.70122 1.05971 1.27814 1.42493 1.25379 0.95795 0.98932 0.96168 0.85800 0.78788 0.79689 0.79248 1.19378 1.20161 1.19372 1.21455 0.91868 0.81158 1.53588 0.88928 1.84174 1.33513 1.10957 1.73526 1.19274 0.89852 0.87402 0.90509 1.21156 0.93388 0.99321 1.11879 1.20891 0.98626 0.92316 0.95116 1.20459 0.94058 0.97121 1.13394 1.20765 0.93850 0.95528 0.95534 1.18845 0.91912 0.92147 1.20245 1.18252 0.87829 0.82754 0.76858 1.90950 1.65775 1.33829 1.47030 1.45966 1.05976 1.09261 1.78449 1.19379 0.81281 0.89651 1.02689 1.20599 1.08128 0.97729 0.93100 1.21821 1.06076 0.94230 0.99601 1.24008 1.06455 0.99395 0.81670 1.84081 1.68068 1.34430 1.20799 1.24029 1.02997 0.82587 0.99414 0.91817 0.85081 0.87198 0.87305 0.87096 0.77286 0.90868 0.91010 0.83283 0.78167 0.77878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.21 13.67 55.48 0.76 -24.45 16 2 C 0.05 1.26 5.49 -17.52 -0.10 1.17 16 3 Si 0.94 20.57 29.55 -169.99 -5.02 15.55 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 7 C -0.40 -11.52 9.49 30.90 0.29 -11.23 16 8 H 0.09 2.38 5.21 -52.49 -0.27 2.11 16 9 O -0.12 -3.67 7.84 -21.06 -0.16 -3.84 16 10 C 0.19 4.74 6.66 -38.60 -0.26 4.48 16 11 C -0.24 -5.15 9.16 -39.44 -0.36 -5.51 16 12 C -0.05 -0.91 10.03 -39.54 -0.40 -1.30 16 13 C -0.23 -3.83 10.02 -39.61 -0.40 -4.23 16 14 C -0.04 -0.66 9.53 -39.20 -0.37 -1.03 16 15 C -0.23 -4.98 5.89 -104.81 -0.62 -5.60 16 16 C 0.55 12.31 7.76 -12.47 -0.10 12.21 16 17 O -0.50 -13.84 15.17 -16.57 -0.25 -14.09 16 18 N -0.74 -12.26 5.50 -62.52 -0.34 -12.60 16 19 C 0.19 2.89 6.19 -5.19 -0.03 2.85 16 20 C -0.19 -2.32 5.53 -104.74 -0.58 -2.90 16 21 C -0.20 -2.10 10.87 -39.70 -0.43 -2.54 16 22 C -0.05 -0.43 12.09 29.41 0.36 -0.08 16 23 O -0.18 -1.86 10.65 5.68 0.06 -1.80 16 24 C -0.02 -0.22 12.01 29.42 0.35 0.13 16 25 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.13 2.79 5.64 -52.48 -0.30 2.49 16 27 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 28 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 29 H 0.11 1.52 6.40 -52.48 -0.34 1.18 16 30 H 0.39 5.43 6.49 -40.82 -0.27 5.17 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.20 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.20 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 313.05 15.07 4.72 4.72 Total: -1.00 -35.39 313.05 -6.15 -41.54 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -3.26 Total: 8.53 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -2.64 Total: -13.57 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.41 Total: -37.05 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.36 Total: -19.72 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.39 -6.15 -41.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194156708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.741 kcal (2) G-P(sol) polarization free energy of solvation -35.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds