Wall clock time and date at job start Tue Mar 31 2020 06:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 109.46830 * 2 1 4 4 C 1.46907 * 111.00219 * 196.05598 * 3 2 1 5 5 C 1.50694 * 109.46773 * 66.04671 * 4 3 2 6 6 H 1.08001 * 120.00629 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00022 * 180.02562 * 5 4 3 8 8 N 1.31524 * 119.99673 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00446 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46794 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47005 * 119.99928 * 9 7 5 12 12 H 1.48497 * 109.47184 * 239.99805 * 9 7 5 13 13 C 1.46902 * 110.99815 * 72.10597 * 3 2 1 14 14 C 1.50700 * 109.47026 * 199.60876 * 13 3 2 15 15 C 1.38719 * 120.02255 * 82.70752 * 14 13 3 16 16 O 1.35943 * 120.02603 * 359.95239 * 15 14 13 17 17 C 1.38692 * 119.94987 * 179.97438 * 15 14 13 18 18 C 1.38188 * 119.99187 * 359.97438 * 17 15 14 19 19 C 1.38398 * 120.04362 * 359.97438 * 18 17 15 20 20 F 1.35106 * 119.97524 * 180.02562 * 19 18 17 21 21 C 1.38231 * 120.02211 * 262.43003 * 14 13 3 22 22 Cl 1.73602 * 119.99332 * 0.02562 * 21 14 13 23 23 H 1.09005 * 109.46738 * 181.10158 * 1 2 3 24 24 H 1.09002 * 109.46867 * 301.09518 * 1 2 3 25 25 H 1.08995 * 109.47810 * 61.10221 * 1 2 3 26 26 H 1.09005 * 109.46865 * 240.00742 * 2 1 3 27 27 H 1.08996 * 109.47837 * 120.00461 * 2 1 3 28 28 H 1.08999 * 109.47245 * 186.05247 * 4 3 2 29 29 H 1.08999 * 109.46784 * 306.05126 * 4 3 2 30 30 H 0.96999 * 119.99752 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.47044 * 319.60186 * 13 3 2 32 32 H 1.09000 * 109.47491 * 79.60537 * 13 3 2 33 33 H 0.96697 * 113.99515 * 90.00250 * 16 15 14 34 34 H 1.07995 * 120.00325 * 180.02562 * 17 15 14 35 35 H 1.08001 * 119.98086 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4377 1.4422 -0.3793 5 6 3.5917 1.0075 -1.8139 6 1 2.7231 0.7181 -2.3869 7 6 4.8416 0.9791 -2.3953 8 7 5.8995 1.3310 -1.6975 9 14 5.0327 0.4409 -4.1739 10 1 3.7003 0.0981 -4.7330 11 1 5.6321 1.5464 -4.9638 12 1 5.9174 -0.7499 -4.2384 13 6 1.7977 2.0218 1.3051 14 6 1.8494 3.5197 1.1485 15 6 0.7267 4.2118 0.7186 16 8 -0.4207 3.5392 0.4374 17 6 0.7758 5.5904 0.5754 18 6 1.9425 6.2735 0.8616 19 6 3.0621 5.5828 1.2915 20 9 4.2019 6.2521 1.5713 21 6 3.0139 4.2056 1.4386 22 17 4.4176 3.3412 1.9829 23 1 -0.3633 -1.0275 0.0198 24 1 -0.3633 0.5308 0.8800 25 1 -0.3634 0.4966 -0.8996 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.8028 2.4631 -0.2677 29 1 4.0132 0.7779 0.2654 30 1 6.7789 1.3107 -2.1063 31 1 0.8205 1.7303 1.6901 32 1 2.5728 1.7023 2.0018 33 1 -1.0144 3.4407 1.1942 34 1 -0.0979 6.1301 0.2412 35 1 1.9804 7.3471 0.7504 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237124857.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:34 Heat of formation + Delta-G solvation = -62.058851 kcal Electronic energy + Delta-G solvation = -21166.416003 eV Core-core repulsion = 17719.298771 eV Total energy + Delta-G solvation = -3447.117232 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.73712 -39.83084 -36.96258 -36.53360 -35.78118 -32.62459 -31.79424 -29.70432 -29.20566 -27.11380 -24.82838 -22.71987 -22.26567 -21.75174 -19.76817 -18.34346 -17.11605 -16.98805 -16.26782 -15.74869 -15.36729 -14.88830 -14.43368 -14.32004 -14.08055 -13.96820 -13.51202 -13.08257 -12.77033 -12.36097 -12.11293 -11.98984 -11.84468 -11.47682 -11.11074 -11.08496 -10.93359 -10.64161 -10.54999 -10.45903 -10.35657 -10.03277 -9.71006 -9.10021 -8.61235 -8.34734 -8.29774 -7.18169 -5.94315 -3.95036 1.06213 1.15256 2.36066 3.34814 3.40946 3.42429 3.47361 4.20365 4.26674 4.49010 4.71562 4.95440 5.06391 5.26343 5.40902 5.56842 5.61920 5.76654 5.82704 5.97640 6.01550 6.07228 6.14933 6.17358 6.40242 6.46312 6.66651 6.77417 6.85031 7.39137 7.44519 7.73904 7.87410 8.17383 8.27250 8.61652 9.12498 9.68052 11.15888 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.013734 B = 0.007167 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.237701 B = 3905.613209 C = 4838.070355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.057 3.943 3 N -0.523 5.523 4 C 0.189 3.811 5 C -0.506 4.506 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.893 5.893 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.089 3.911 14 C -0.052 4.052 15 C 0.128 3.872 16 O -0.474 6.474 17 C -0.120 4.120 18 C -0.136 4.136 19 C 0.096 3.904 20 F -0.130 7.130 21 C -0.050 4.050 22 Cl -0.028 7.028 23 H 0.044 0.956 24 H 0.043 0.957 25 H 0.060 0.940 26 H 0.087 0.913 27 H 0.016 0.984 28 H 0.040 0.960 29 H -0.010 1.010 30 H 0.259 0.741 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.382 0.618 34 H 0.140 0.860 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.140 6.755 9.355 16.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.071 4.071 3 N -0.247 5.247 4 C 0.064 3.936 5 C -0.545 4.545 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.039 4.039 14 C -0.054 4.054 15 C 0.082 3.918 16 O -0.283 6.283 17 C -0.139 4.139 18 C -0.155 4.155 19 C 0.076 3.924 20 F -0.108 7.108 21 C -0.079 4.079 22 Cl 0.002 6.998 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.105 0.895 27 H 0.034 0.966 28 H 0.058 0.942 29 H 0.007 0.993 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.237 0.763 34 H 0.158 0.842 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.796 6.918 8.475 15.370 hybrid contribution 0.955 -0.575 0.064 1.117 sum -9.840 6.343 8.539 14.490 Atomic orbital electron populations 1.21773 0.96473 0.99743 1.01794 1.21968 0.94212 0.89985 1.00917 1.62153 1.23324 1.15865 1.23397 1.19900 0.80473 0.97592 0.95596 1.21208 0.92771 1.43854 0.96685 0.91947 1.24964 0.95934 0.95758 0.97862 1.69987 0.98471 1.48528 1.36314 0.86522 0.78046 0.78124 0.85214 1.19710 1.21110 1.21216 1.20935 1.01079 0.88294 0.93604 1.19989 0.91250 0.97503 0.96621 1.17995 0.86946 0.89050 0.97826 1.84982 1.28843 1.76756 1.37700 1.21266 0.98562 0.93347 1.00717 1.20845 0.91521 1.00796 1.02320 1.17350 0.83622 0.88368 1.03097 1.91520 1.48048 1.79989 1.91250 1.20814 0.90944 0.90717 1.05386 1.98419 1.38022 1.75900 1.87484 0.93714 0.93756 0.92059 0.89499 0.96581 0.94213 0.99264 0.93154 0.90559 0.93788 0.76270 0.84187 0.83887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.99 37.16 0.37 -1.79 16 2 C 0.06 1.11 5.52 -3.83 -0.02 1.09 16 3 N -0.52 -11.27 4.37 -237.52 -1.04 -12.31 16 4 C 0.19 4.95 3.91 -4.98 -0.02 4.93 16 5 C -0.51 -14.48 8.28 -34.44 -0.29 -14.76 16 6 H 0.06 1.78 7.26 -52.49 -0.38 1.40 16 7 C 0.06 1.62 5.46 -17.81 -0.10 1.53 16 8 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 9 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 C 0.09 1.59 4.43 -4.97 -0.02 1.57 16 14 C -0.05 -0.89 5.00 -104.45 -0.52 -1.41 16 15 C 0.13 1.87 6.68 -39.24 -0.26 1.61 16 16 O -0.47 -6.16 12.68 -19.56 -0.25 -6.41 16 17 C -0.12 -1.51 9.98 -39.43 -0.39 -1.90 16 18 C -0.14 -1.78 10.02 -39.54 -0.40 -2.17 16 19 C 0.10 1.56 7.27 -39.39 -0.29 1.28 16 20 F -0.13 -2.17 16.83 2.25 0.04 -2.13 16 21 C -0.05 -0.90 5.58 -39.46 -0.22 -1.12 16 22 Cl -0.03 -0.54 24.77 -51.86 -1.28 -1.82 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.04 0.60 6.51 -51.93 -0.34 0.27 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.09 1.87 6.59 -51.93 -0.34 1.53 16 27 H 0.02 0.30 8.05 -51.93 -0.42 -0.12 16 28 H 0.04 1.11 5.32 -51.93 -0.28 0.83 16 29 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.08 1.15 5.86 -51.93 -0.30 0.84 16 32 H 0.04 0.82 6.46 -51.93 -0.34 0.48 16 33 H 0.38 2.84 9.06 45.56 0.41 3.25 16 34 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 35 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 308.88 15.07 4.65 4.65 Total: -1.00 -32.66 308.88 -7.55 -40.20 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: -3.23 Total: -1.96 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -2.15 Total: -11.16 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: -0.30 Total: -38.51 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.25 Total: -6.41 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.28 Total: -1.82 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.66 -7.55 -40.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237124857.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.856 kcal (2) G-P(sol) polarization free energy of solvation -32.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds