Wall clock time and date at job start Tue Mar 31 2020 06:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86799 * 119.99990 * 2 1 4 4 H 1.48499 * 109.46927 * 269.99843 * 3 2 1 5 5 H 1.48500 * 109.47332 * 29.99808 * 3 2 1 6 6 H 1.48500 * 109.47432 * 149.99886 * 3 2 1 7 7 C 1.38950 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99673 * 198.09694 * 7 2 1 9 9 N 1.37091 * 120.00185 * 18.09657 * 7 2 1 10 10 C 1.46505 * 120.00198 * 232.09286 * 9 7 2 11 11 C 1.53003 * 109.46524 * 273.09600 * 10 9 7 12 12 C 1.50700 * 109.46983 * 180.02562 * 11 10 9 13 13 O 1.20836 * 119.99806 * 359.97438 * 12 11 10 14 14 O 1.34222 * 120.00126 * 179.97438 * 12 11 10 15 15 C 1.34774 * 119.99805 * 52.08461 * 9 7 2 16 16 O 1.21301 * 119.99915 * 185.21525 * 15 9 7 17 17 C 1.50700 * 120.00405 * 5.22011 * 15 9 7 18 18 H 1.08999 * 109.38293 * 309.33075 * 17 15 9 19 19 C 1.52579 * 109.39344 * 189.52668 * 17 15 9 20 20 C 1.52585 * 110.72631 * 169.27069 * 19 17 15 21 21 C 1.53095 * 109.95339 * 70.67827 * 20 19 17 22 22 S 1.81754 * 108.84065 * 296.97550 * 21 20 19 23 23 C 1.53092 * 109.30735 * 69.07975 * 17 15 9 24 24 H 0.96999 * 119.99705 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46957 * 33.08964 * 10 9 7 26 26 H 1.08996 * 109.47087 * 153.09662 * 10 9 7 27 27 H 1.08999 * 109.46984 * 299.99347 * 11 10 9 28 28 H 1.08989 * 109.47246 * 59.99912 * 11 10 9 29 29 H 0.96702 * 117.00103 * 179.97438 * 14 12 11 30 30 H 1.09001 * 109.22875 * 289.59646 * 19 17 15 31 31 H 1.09003 * 109.22324 * 48.99625 * 19 17 15 32 32 H 1.09001 * 109.38853 * 190.82262 * 20 19 17 33 33 H 1.08999 * 109.38971 * 310.62878 * 20 19 17 34 34 H 1.09005 * 109.57781 * 56.77893 * 21 20 19 35 35 H 1.09002 * 109.57877 * 177.16643 * 21 20 19 36 36 H 1.09002 * 109.57939 * 302.93397 * 23 17 15 37 37 H 1.09003 * 109.57921 * 63.32031 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0489 -1.2263 0.2911 9 7 1.3743 -2.3614 -0.3677 10 6 1.4243 -3.5346 0.5084 11 6 2.6829 -4.3481 0.1998 12 6 2.7341 -5.5552 1.1005 13 8 1.8544 -5.7451 1.9068 14 8 3.7569 -6.4194 1.0070 15 6 0.7043 -2.4206 -1.5356 16 8 0.0645 -3.4116 -1.8183 17 6 0.7501 -1.2556 -2.4905 18 1 0.5059 -0.3386 -1.9544 19 6 -0.2661 -1.4756 -3.6072 20 6 -0.4369 -0.2081 -4.4393 21 6 0.8204 0.0407 -5.2766 22 16 2.2245 0.3227 -4.1576 23 6 2.1580 -1.1398 -3.0806 24 1 -0.4850 0.8401 -0.0004 25 1 1.4473 -3.2104 1.5488 26 1 0.5421 -4.1520 0.3394 27 1 2.6600 -4.6723 -0.8406 28 1 3.5650 -3.7307 0.3686 29 1 3.7463 -7.1785 1.6060 30 1 0.0782 -2.2844 -4.2517 31 1 -1.2263 -1.7492 -3.1699 32 1 -1.2956 -0.3226 -5.1010 33 1 -0.6019 0.6408 -3.7758 34 1 1.0208 -0.8294 -5.9019 35 1 0.6726 0.9185 -5.9056 36 1 2.8842 -1.0332 -2.2747 37 1 2.3846 -2.0329 -3.6631 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071069.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:40 Heat of formation + Delta-G solvation = -137.767426 kcal Electronic energy + Delta-G solvation = -21792.162119 eV Core-core repulsion = 18467.265928 eV Total energy + Delta-G solvation = -3324.896191 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.00754 -39.02561 -36.07521 -35.67291 -34.80963 -32.75532 -30.97846 -30.12360 -26.66142 -25.29453 -24.51563 -22.63359 -21.04095 -20.14995 -19.15308 -17.89360 -17.18623 -16.41178 -15.88382 -15.75700 -15.20338 -14.89655 -14.66753 -14.12965 -14.08909 -13.55397 -13.07912 -12.97033 -12.83129 -12.66943 -12.33419 -12.14233 -11.56024 -11.47438 -11.31795 -11.17640 -11.12870 -10.84860 -10.77775 -10.52346 -10.34964 -10.30610 -10.23218 -10.15501 -9.31815 -8.83910 -8.28255 -7.49676 -7.21029 -6.52668 -4.36300 2.24292 2.48641 2.96632 3.14391 3.19916 3.24853 3.31273 3.92537 4.11569 4.74993 4.81555 5.11848 5.23699 5.37956 5.45780 5.55408 5.62417 5.75080 5.77272 5.88603 5.94008 6.08105 6.12070 6.23328 6.42908 6.49178 6.57199 6.62974 6.68991 6.83496 6.89660 7.17594 7.31498 7.79394 8.12932 8.50732 8.80946 9.43607 9.87314 10.51722 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.016594 B = 0.006352 C = 0.005452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.903710 B = 4407.272448 C = 5134.904219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.250 1.250 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.351 4.351 8 H 0.085 0.915 9 N -0.453 5.453 10 C 0.124 3.876 11 C -0.124 4.124 12 C 0.483 3.517 13 O -0.517 6.517 14 O -0.523 6.523 15 C 0.525 3.475 16 O -0.605 6.605 17 C -0.103 4.103 18 H 0.137 0.863 19 C -0.106 4.106 20 C -0.120 4.120 21 C -0.080 4.080 22 S -0.284 6.284 23 C -0.054 4.054 24 H 0.274 0.726 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.403 0.597 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.123 0.877 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.816 -1.704 -4.985 7.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.150 4.150 3 Si 0.715 3.285 4 H -0.174 1.174 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.479 4.479 8 H 0.102 0.898 9 N -0.173 5.173 10 C 0.000 4.000 11 C -0.163 4.163 12 C 0.326 3.674 13 O -0.405 6.405 14 O -0.334 6.334 15 C 0.314 3.686 16 O -0.489 6.489 17 C -0.126 4.126 18 H 0.154 0.846 19 C -0.144 4.144 20 C -0.158 4.158 21 C -0.228 4.228 22 S -0.057 6.057 23 C -0.202 4.202 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.119 0.881 28 H 0.124 0.876 29 H 0.261 0.739 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.141 0.859 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.838 -0.898 -5.143 7.118 hybrid contribution -0.460 -0.612 0.592 0.968 sum 4.378 -1.509 -4.551 6.493 Atomic orbital electron populations 1.70001 1.06242 1.28383 1.43849 1.25542 0.95127 1.00170 0.94132 0.86477 0.79868 0.81712 0.80456 1.17368 1.20778 1.19255 1.19227 0.94864 0.83678 1.50098 0.89788 1.43242 1.48906 1.10192 1.14911 1.21120 0.94559 0.88815 0.95549 1.21839 1.03741 0.91662 0.99057 1.23757 0.77893 0.83517 0.82252 1.90707 1.38294 1.74656 1.36853 1.84584 1.48644 1.37714 1.62503 1.20193 0.79683 0.86921 0.81800 1.90510 1.45864 1.35076 1.77499 1.21596 0.92904 1.02722 0.95345 0.84551 1.21295 1.00596 0.96027 0.96512 1.21731 0.95949 0.99731 0.98427 1.23401 0.95950 1.04614 0.98821 1.86682 1.41876 1.36950 1.40148 1.23394 1.01473 0.95397 0.99953 0.91587 0.90685 0.90817 0.88081 0.87593 0.73919 0.92552 0.90881 0.91484 0.90735 0.90396 0.88622 0.85903 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.49 11.50 55.50 0.64 -20.85 16 2 C 0.06 1.37 3.45 -17.47 -0.06 1.31 16 3 Si 0.89 18.48 29.59 -169.99 -5.03 13.45 16 4 H -0.25 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.35 -8.17 7.16 -14.94 -0.11 -8.28 16 8 H 0.08 1.87 7.89 -52.48 -0.41 1.46 16 9 N -0.45 -10.55 2.43 -114.81 -0.28 -10.83 16 10 C 0.12 2.65 4.74 -4.04 -0.02 2.63 16 11 C -0.12 -2.12 6.13 -27.88 -0.17 -2.29 16 12 C 0.48 7.81 8.33 36.01 0.30 8.11 16 13 O -0.52 -9.90 16.74 -18.76 -0.31 -10.21 16 14 O -0.52 -6.55 13.42 -39.24 -0.53 -7.08 16 15 C 0.53 12.61 6.26 -10.99 -0.07 12.54 16 16 O -0.60 -15.80 15.43 5.54 0.09 -15.71 16 17 C -0.10 -2.19 1.50 -91.94 -0.14 -2.33 16 18 H 0.14 3.16 4.32 -51.93 -0.22 2.94 16 19 C -0.11 -2.02 4.30 -27.16 -0.12 -2.14 16 20 C -0.12 -1.87 5.75 -26.89 -0.15 -2.03 16 21 C -0.08 -1.15 6.46 37.21 0.24 -0.91 16 22 S -0.28 -4.96 22.33 -107.50 -2.40 -7.37 16 23 C -0.05 -1.02 5.59 37.21 0.21 -0.82 16 24 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 25 H 0.07 1.63 8.02 -51.93 -0.42 1.22 16 26 H 0.07 1.72 7.23 -51.93 -0.38 1.35 16 27 H 0.10 1.72 8.14 -51.93 -0.42 1.29 16 28 H 0.11 1.67 8.14 -51.94 -0.42 1.24 16 29 H 0.40 3.16 9.10 45.56 0.41 3.57 16 30 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 31 H 0.07 1.51 7.87 -51.93 -0.41 1.10 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 1.25 8.06 -51.93 -0.42 0.83 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.12 2.43 6.48 -51.93 -0.34 2.09 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 316.64 15.07 4.77 4.77 Total: -1.00 -29.33 316.64 -7.41 -36.74 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -4.27 Total: 11.28 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -0.09 Total: 5.80 kcal Atomic # 7 Polarization: -32.04 SS G_CDS: 0.36 Total: -31.68 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -0.76 Total: -33.00 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Atomic # 16 Polarization: -4.96 SS G_CDS: -2.40 Total: -7.37 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.33 -7.41 -36.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071069.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.024 kcal (2) G-P(sol) polarization free energy of solvation -29.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds