Wall clock time and date at job start Tue Mar 31 2020 05:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33516 * 126.72748 * 2 1 4 4 N 1.20649 * 113.39583 * 179.97438 * 3 2 1 5 5 C 1.30867 * 112.12042 * 359.69364 * 4 3 2 6 6 C 1.48317 * 127.44624 * 180.32792 * 5 4 3 7 7 C 1.39809 * 120.54093 * 325.14934 * 6 5 4 8 8 C 1.38407 * 118.31017 * 179.97438 * 7 6 5 9 9 C 1.38320 * 119.28367 * 0.02562 * 8 7 6 10 10 N 1.31890 * 121.03711 * 0.02562 * 9 8 7 11 11 C 1.31744 * 121.85534 * 359.68803 * 10 9 8 12 12 C 1.37278 * 126.73179 * 179.97438 * 2 1 3 13 13 C 1.47201 * 128.58032 * 0.02562 * 12 2 1 14 14 O 1.21646 * 120.00429 * 90.02272 * 13 12 2 15 15 N 1.34784 * 119.99795 * 269.74140 * 13 12 2 16 16 C 1.46497 * 119.99487 * 0.28084 * 15 13 12 17 17 C 1.36958 * 120.00029 * 180.27853 * 15 13 12 18 18 H 1.08002 * 119.99903 * 21.35936 * 17 15 13 19 19 C 1.38983 * 119.99634 * 201.36101 * 17 15 13 20 20 N 1.31405 * 120.00662 * 11.99171 * 19 17 15 21 21 Si 1.86808 * 119.99543 * 191.98735 * 19 17 15 22 22 H 1.48499 * 109.46615 * 85.06481 * 21 19 17 23 23 H 1.48497 * 109.46847 * 205.06134 * 21 19 17 24 24 H 1.48498 * 109.47440 * 325.06225 * 21 19 17 25 25 H 1.09002 * 109.47337 * 270.00177 * 1 2 3 26 26 H 1.08998 * 109.46893 * 30.00370 * 1 2 3 27 27 H 1.09002 * 109.47077 * 149.99864 * 1 2 3 28 28 H 1.07997 * 120.84150 * 0.02562 * 7 6 5 29 29 H 1.07999 * 120.35810 * 180.02562 * 8 7 6 30 30 H 1.08002 * 119.47667 * 180.02562 * 9 8 7 31 31 H 1.07997 * 119.70068 * 180.31290 * 11 10 9 32 32 H 1.09003 * 109.47627 * 92.76373 * 16 15 13 33 33 H 1.09004 * 109.46931 * 212.75843 * 16 15 13 34 34 H 1.08993 * 109.47549 * 332.75663 * 16 15 13 35 35 H 0.96990 * 120.00453 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3055 1.0701 0.0000 4 7 3.4794 0.7919 0.0005 5 6 3.6794 -0.5014 0.0074 6 6 4.9809 -1.2126 0.0169 7 6 6.0814 -0.6894 -0.6684 8 6 7.2738 -1.3910 -0.6282 9 6 7.3377 -2.5765 0.0815 10 7 6.2820 -3.0460 0.7176 11 6 5.1278 -2.4108 0.7125 12 6 2.3280 -1.1002 0.0005 13 6 1.9548 -2.5241 0.0006 14 8 1.8013 -3.1128 -1.0528 15 7 1.7886 -3.1771 1.1679 16 6 1.9734 -2.4681 2.4365 17 6 1.4469 -4.5034 1.1681 18 1 1.6407 -5.1110 0.2965 19 6 0.8509 -5.0672 2.2899 20 7 0.4008 -4.2949 3.2531 21 14 0.6895 -6.9232 2.4284 22 1 1.9436 -7.4885 2.9878 23 1 -0.4465 -7.2556 3.3250 24 1 0.4433 -7.5005 1.0826 25 1 -0.3634 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 6.0033 0.2391 -1.2144 29 1 8.1450 -1.0168 -1.1454 30 1 8.2667 -3.1263 0.1153 31 1 4.2871 -2.8244 1.2495 32 1 1.0146 -2.0777 2.7777 33 1 2.3718 -3.1558 3.1824 34 1 2.6714 -1.6432 2.2934 35 1 -0.0155 -4.6884 4.0357 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367144821.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:21 Heat of formation + Delta-G solvation = 73.477349 kcal Electronic energy + Delta-G solvation = -22730.274608 eV Core-core repulsion = 19311.387478 eV Total energy + Delta-G solvation = -3418.887130 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.106 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.49037 -39.93568 -38.43514 -34.81066 -34.26330 -33.22774 -32.10471 -31.58672 -30.54980 -27.77767 -26.47635 -25.26712 -24.24139 -23.59094 -22.73987 -20.41559 -19.14884 -17.52170 -17.20073 -17.01444 -16.84940 -16.02102 -15.92050 -15.27465 -14.53282 -14.30600 -14.07913 -13.79426 -13.52665 -13.19175 -12.99551 -12.98623 -12.76670 -12.28686 -11.79681 -11.77469 -11.54931 -11.32542 -11.02941 -10.95611 -10.60575 -10.42191 -10.33622 -9.66302 -9.38603 -9.18301 -9.00885 -8.68779 -8.59887 -7.85434 -6.43922 -3.99734 0.83849 1.31290 1.74823 2.42416 3.09075 3.19727 3.22511 3.27325 3.53522 3.90920 3.96973 4.09757 4.61073 4.61516 4.81214 4.89112 4.96914 4.99193 5.15463 5.33029 5.46441 5.48592 5.66469 5.73015 5.81201 5.93104 5.98601 6.13550 6.19285 6.23235 6.30382 6.72162 6.76878 7.11733 7.46260 7.97518 8.05413 8.33872 8.45881 9.03147 9.24998 9.80584 10.59001 Molecular weight = 287.11amu Principal moments of inertia in cm(-1) A = 0.014219 B = 0.006966 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.658342 B = 4018.761143 C = 5437.490055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.006 4.006 3 O 0.098 5.902 4 N -0.353 5.353 5 C 0.074 3.926 6 C -0.067 4.067 7 C -0.050 4.050 8 C -0.178 4.178 9 C 0.102 3.898 10 N -0.476 5.476 11 C 0.138 3.862 12 C -0.186 4.186 13 C 0.507 3.493 14 O -0.575 6.575 15 N -0.425 5.425 16 C 0.109 3.891 17 C -0.308 4.308 18 H 0.103 0.897 19 C 0.035 3.965 20 N -0.876 5.876 21 Si 0.929 3.071 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.268 1.268 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.158 0.842 31 H 0.167 0.833 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.022 0.978 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.307 8.301 -2.038 10.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.069 4.069 3 O 0.031 5.969 4 N -0.056 5.056 5 C -0.086 4.086 6 C -0.070 4.070 7 C -0.077 4.077 8 C -0.198 4.198 9 C -0.055 4.055 10 N -0.184 5.184 11 C -0.021 4.021 12 C -0.194 4.194 13 C 0.293 3.707 14 O -0.460 6.460 15 N -0.142 5.142 16 C -0.034 4.034 17 C -0.436 4.436 18 H 0.121 0.879 19 C -0.169 4.169 20 N -0.514 5.514 21 Si 0.755 3.245 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.192 1.192 25 H 0.111 0.889 26 H 0.101 0.899 27 H 0.115 0.885 28 H 0.154 0.846 29 H 0.156 0.844 30 H 0.175 0.825 31 H 0.184 0.816 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.041 0.959 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.979 8.247 -1.871 10.965 hybrid contribution -0.478 -0.637 -0.210 0.824 sum 6.502 7.610 -2.081 10.223 Atomic orbital electron populations 1.20378 0.83144 1.04695 1.04531 1.24491 0.95913 0.84784 1.01697 1.84412 1.10989 1.33387 1.68082 1.73839 0.96163 1.15849 1.19788 1.22772 0.93277 0.88905 1.03621 1.18655 0.90379 0.96580 1.01347 1.21602 0.91565 0.98999 0.95530 1.22038 0.98489 0.97235 1.02061 1.22935 0.97187 0.93226 0.92150 1.67798 0.99400 1.32504 1.18676 1.23186 0.95505 0.89507 0.93885 1.22398 0.90750 0.97053 1.09211 1.16637 0.86003 0.83023 0.85006 1.90662 1.57265 1.67013 1.31038 1.43555 1.57351 1.09644 1.03628 1.21578 1.00144 0.94875 0.86823 1.19710 1.38022 0.83343 1.02500 0.87885 1.25373 0.95033 1.00618 0.95866 1.69991 1.36919 1.35383 1.09149 0.85893 0.77970 0.82004 0.78635 1.20015 1.20836 1.19244 0.88921 0.89886 0.88515 0.84591 0.84418 0.82486 0.81610 0.91866 0.90669 0.95905 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 10.32 36.01 0.37 -0.59 16 2 C -0.01 -0.11 7.54 -34.66 -0.26 -0.37 16 3 O 0.10 1.63 11.05 18.60 0.21 1.84 16 4 N -0.35 -6.31 12.06 34.61 0.42 -5.90 16 5 C 0.07 1.43 6.82 -80.22 -0.55 0.88 16 6 C -0.07 -1.21 5.89 -104.76 -0.62 -1.82 16 7 C -0.05 -0.74 9.93 -38.93 -0.39 -1.12 16 8 C -0.18 -2.20 10.10 -39.49 -0.40 -2.60 16 9 C 0.10 1.40 11.17 -17.50 -0.20 1.20 16 10 N -0.48 -8.46 10.35 -12.96 -0.13 -8.59 16 11 C 0.14 2.65 10.50 -17.18 -0.18 2.47 16 12 C -0.19 -3.85 4.34 -102.69 -0.45 -4.30 16 13 C 0.51 12.43 6.28 -12.62 -0.08 12.35 16 14 O -0.57 -16.19 16.79 5.24 0.09 -16.10 16 15 N -0.42 -10.54 2.49 -123.50 -0.31 -10.84 16 16 C 0.11 2.42 7.65 59.85 0.46 2.88 16 17 C -0.31 -8.26 9.31 -14.99 -0.14 -8.40 16 18 H 0.10 2.91 7.39 -52.49 -0.39 2.53 16 19 C 0.04 0.90 5.11 -17.46 -0.09 0.81 16 20 N -0.88 -22.17 10.57 55.50 0.59 -21.58 16 21 Si 0.93 20.13 29.57 -169.99 -5.03 15.10 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 25 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 26 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.10 1.48 8.10 -51.93 -0.42 1.06 16 28 H 0.14 1.77 8.06 -52.49 -0.42 1.34 16 29 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 30 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 31 H 0.17 3.52 5.42 -52.49 -0.28 3.23 16 32 H 0.06 1.42 7.53 -51.93 -0.39 1.03 16 33 H 0.07 1.73 7.04 -51.93 -0.37 1.37 16 34 H 0.02 0.45 6.29 -51.93 -0.33 0.13 16 35 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 LS Contribution 309.68 15.07 4.67 4.67 Total: -1.00 -31.25 309.68 -5.44 -36.69 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -3.42 Total: 3.34 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -2.51 Total: 1.38 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: 0.56 Total: -46.92 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.29 Total: -14.26 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.10 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.25 -5.44 -36.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367144821.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.168 kcal (2) G-P(sol) polarization free energy of solvation -31.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds