Wall clock time and date at job start Tue Mar 31 2020 05:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.75874 * 125.20553 * 2 1 4 4 C 1.75882 * 90.97020 * 180.02562 * 3 2 1 5 5 C 1.33390 * 109.59565 * 359.72891 * 4 3 2 6 6 C 1.33387 * 125.19803 * 180.02562 * 2 1 3 7 7 C 1.50706 * 122.54080 * 359.97438 * 6 2 1 8 8 N 1.46500 * 109.46878 * 84.00499 * 7 6 2 9 9 C 1.36940 * 119.99947 * 264.72125 * 8 7 6 10 10 H 1.08001 * 119.99664 * 318.98561 * 9 8 7 11 11 C 1.38816 * 120.00049 * 138.98837 * 9 8 7 12 12 N 1.31618 * 120.00060 * 343.36796 * 11 9 8 13 13 Si 1.86801 * 119.99771 * 163.36788 * 11 9 8 14 14 H 1.48505 * 109.46693 * 90.00181 * 13 11 9 15 15 H 1.48500 * 109.46958 * 209.99550 * 13 11 9 16 16 H 1.48493 * 109.47462 * 330.00310 * 13 11 9 17 17 C 1.46504 * 120.00192 * 84.72274 * 8 7 6 18 18 C 1.50698 * 109.47134 * 89.67379 * 17 8 7 19 19 C 1.38239 * 120.00013 * 86.02028 * 18 17 8 20 20 C 1.38230 * 120.00213 * 179.97438 * 19 18 17 21 21 C 1.38239 * 119.99918 * 0.07467 * 20 19 18 22 22 C 1.38230 * 119.99881 * 359.90378 * 21 20 19 23 23 C 1.38234 * 120.00239 * 266.00000 * 18 17 8 24 24 H 1.08995 * 109.47331 * 273.77803 * 1 2 3 25 25 H 1.09007 * 109.46763 * 33.77391 * 1 2 3 26 26 H 1.08994 * 109.47736 * 153.76896 * 1 2 3 27 27 H 1.08005 * 125.20458 * 180.02562 * 4 3 2 28 28 H 1.07998 * 122.54675 * 180.24489 * 5 4 3 29 29 H 1.08991 * 109.46994 * 324.00658 * 7 6 2 30 30 H 1.09004 * 109.46970 * 203.99974 * 7 6 2 31 31 H 0.96994 * 119.99686 * 179.97438 * 12 11 9 32 32 H 1.08999 * 109.47078 * 329.67054 * 17 8 7 33 33 H 1.09005 * 109.46728 * 209.67281 * 17 8 7 34 34 H 1.08008 * 119.99959 * 359.70512 * 19 18 17 35 35 H 1.08002 * 120.00530 * 179.97438 * 20 19 18 36 36 H 1.08004 * 120.00191 * 179.97438 * 21 20 19 37 37 H 1.08001 * 120.00002 * 180.02562 * 22 21 20 38 38 H 1.08002 * 119.99431 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5210 1.4370 0.0000 4 6 3.9750 0.4475 -0.0008 5 6 3.6379 -0.8430 0.0049 6 6 2.2759 -1.0900 -0.0005 7 6 1.7050 -2.4847 -0.0005 8 7 1.3860 -2.8817 -1.3742 9 6 0.1146 -2.7190 -1.8562 10 1 -0.7342 -2.9483 -1.2289 11 6 -0.0833 -2.2594 -3.1510 12 7 0.9017 -1.6753 -3.7998 13 14 -1.7476 -2.4700 -3.9727 14 1 -2.5940 -1.2836 -3.6876 15 1 -1.5618 -2.6044 -5.4399 16 1 -2.4100 -3.6893 -3.4439 17 6 2.4271 -3.4528 -2.2322 18 6 2.4502 -4.9503 -2.0652 19 6 1.6066 -5.7431 -2.8207 20 6 1.6281 -7.1168 -2.6680 21 6 2.4921 -7.6976 -1.7585 22 6 3.3359 -6.9049 -1.0033 23 6 3.3151 -5.5313 -1.1568 24 1 -0.3634 0.0677 1.0254 25 1 -0.3633 0.8543 -0.5713 26 1 -0.3634 -0.9217 -0.4542 27 1 4.9863 0.8268 -0.0007 28 1 4.3719 -1.6353 0.0095 29 1 0.7981 -2.5061 0.6037 30 1 2.4364 -3.1767 0.4171 31 1 0.7635 -1.3545 -4.7046 32 1 3.3962 -3.0408 -1.9508 33 1 2.2159 -3.2064 -3.2728 34 1 0.9277 -5.2889 -3.5273 35 1 0.9688 -7.7362 -3.2579 36 1 2.5086 -8.7709 -1.6388 37 1 4.0112 -7.3587 -0.2930 38 1 3.9747 -4.9119 -0.5670 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237968079.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:09 Heat of formation + Delta-G solvation = 72.869225 kcal Electronic energy + Delta-G solvation = -20492.053563 eV Core-core repulsion = 17619.433277 eV Total energy + Delta-G solvation = -2872.620286 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.104 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.63883 -37.77118 -35.06234 -31.63896 -31.42701 -30.31080 -30.21270 -27.31114 -25.59111 -24.46907 -22.45827 -21.84644 -21.37033 -20.07173 -17.64072 -16.85277 -16.37828 -15.89522 -15.03737 -14.56385 -14.33024 -14.27890 -13.90225 -13.52256 -12.88600 -12.76984 -12.63240 -12.60080 -11.97454 -11.85666 -11.70226 -11.44393 -11.34177 -10.91117 -10.78622 -10.71414 -10.63780 -10.54057 -10.13660 -10.06628 -9.99987 -9.88537 -8.55711 -8.28386 -8.02140 -7.80091 -7.59802 -6.59573 -5.85289 -3.47321 1.76225 2.03619 2.07604 2.37861 2.71131 3.28637 3.38021 3.39454 3.54062 4.39058 4.49830 5.27495 5.45832 5.50128 5.54883 5.62768 5.74365 5.77252 5.91848 6.01440 6.16804 6.22405 6.27059 6.28203 6.32492 6.37288 6.51743 6.64394 6.73112 6.81006 6.88962 7.03351 7.07953 7.16848 7.26745 7.43565 7.43640 7.63357 7.72611 7.75227 8.46930 9.09960 9.69764 10.31991 11.13166 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.013586 B = 0.007019 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.448787 B = 3988.414506 C = 5526.358840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.135 4.135 3 S 0.030 5.970 4 C -0.231 4.231 5 C -0.108 4.108 6 C -0.115 4.115 7 C 0.200 3.800 8 N -0.561 5.561 9 C -0.257 4.257 10 H 0.060 0.940 11 C 0.022 3.978 12 N -0.875 5.875 13 Si 0.888 3.112 14 H -0.284 1.284 15 H -0.288 1.288 16 H -0.276 1.276 17 C 0.178 3.822 18 C -0.070 4.070 19 C -0.097 4.097 20 C -0.128 4.128 21 C -0.144 4.144 22 C -0.130 4.130 23 C -0.124 4.124 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.110 0.890 27 H 0.150 0.850 28 H 0.127 0.873 29 H 0.056 0.944 30 H 0.040 0.960 31 H 0.256 0.744 32 H 0.033 0.967 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.924 -2.354 5.774 7.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.253 4.253 3 S 0.292 5.708 4 C -0.366 4.366 5 C -0.140 4.140 6 C -0.128 4.128 7 C 0.072 3.928 8 N -0.278 5.278 9 C -0.387 4.387 10 H 0.077 0.923 11 C -0.180 4.180 12 N -0.515 5.515 13 Si 0.716 3.284 14 H -0.211 1.211 15 H -0.214 1.214 16 H -0.201 1.201 17 C 0.052 3.948 18 C -0.073 4.073 19 C -0.115 4.115 20 C -0.146 4.146 21 C -0.163 4.163 22 C -0.148 4.148 23 C -0.143 4.143 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.129 0.871 27 H 0.168 0.832 28 H 0.145 0.855 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.119 0.881 34 H 0.138 0.862 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.663 -0.685 5.590 6.719 hybrid contribution -0.385 -1.428 -0.676 1.626 sum 3.278 -2.113 4.915 6.274 Atomic orbital electron populations 1.20509 0.88344 1.05345 1.00474 1.24035 0.99395 0.93430 1.08464 1.83813 0.98589 1.12475 1.75882 1.25186 1.00574 0.96844 1.13975 1.20031 0.96115 0.95710 1.02146 1.19856 0.92209 0.98793 1.01953 1.19727 0.97095 0.87447 0.88565 1.43702 1.07661 1.67318 1.09165 1.18907 0.83463 1.38671 0.97627 0.92292 1.25284 0.96684 0.96577 0.99436 1.69944 1.31532 1.37726 1.12296 0.86550 0.84508 0.78401 0.78897 1.21071 1.21424 1.20113 1.19981 0.90637 0.84219 0.99981 1.21254 0.93096 0.99551 0.93381 1.21111 0.98204 0.92700 0.99531 1.21089 0.99209 0.95332 0.99014 1.20885 0.98246 0.98755 0.98404 1.20970 0.99694 0.94162 0.99973 1.21043 0.99932 0.94274 0.99086 0.92834 0.92709 0.87124 0.83187 0.85548 0.92601 0.94121 0.93399 0.94865 0.88095 0.86248 0.87257 0.87450 0.87392 0.87224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.66 9.88 36.01 0.36 -1.31 16 2 C -0.14 -2.68 6.50 -36.00 -0.23 -2.92 16 3 S 0.03 0.53 23.33 -107.50 -2.51 -1.98 16 4 C -0.23 -3.93 11.23 29.04 0.33 -3.60 16 5 C -0.11 -1.97 9.96 -41.21 -0.41 -2.38 16 6 C -0.11 -2.29 5.38 -106.25 -0.57 -2.86 16 7 C 0.20 4.05 5.42 -5.19 -0.03 4.02 16 8 N -0.56 -12.74 2.37 -175.98 -0.42 -13.16 16 9 C -0.26 -6.31 7.23 -15.06 -0.11 -6.42 16 10 H 0.06 1.47 7.76 -52.49 -0.41 1.06 16 11 C 0.02 0.56 5.04 -17.43 -0.09 0.47 16 12 N -0.87 -23.46 11.43 55.49 0.63 -22.83 16 13 Si 0.89 20.27 29.59 -169.99 -5.03 15.24 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 17 C 0.18 3.94 5.42 -5.19 -0.03 3.91 16 18 C -0.07 -1.39 5.46 -104.62 -0.57 -1.97 16 19 C -0.10 -1.90 9.72 -39.58 -0.38 -2.28 16 20 C -0.13 -2.17 10.05 -39.58 -0.40 -2.57 16 21 C -0.14 -2.25 10.05 -39.58 -0.40 -2.65 16 22 C -0.13 -2.04 10.05 -39.59 -0.40 -2.44 16 23 C -0.12 -2.18 9.69 -39.58 -0.38 -2.57 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.11 2.34 4.79 -51.93 -0.25 2.09 16 27 H 0.15 2.12 8.06 -52.48 -0.42 1.70 16 28 H 0.13 2.08 8.06 -52.49 -0.42 1.65 16 29 H 0.06 1.12 7.35 -51.93 -0.38 0.73 16 30 H 0.04 0.76 8.07 -51.93 -0.42 0.35 16 31 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 32 H 0.03 0.72 7.99 -51.93 -0.41 0.30 16 33 H 0.10 2.55 5.56 -51.93 -0.29 2.26 16 34 H 0.12 2.50 8.06 -52.48 -0.42 2.07 16 35 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 37 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 38 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 LS Contribution 331.63 15.07 5.00 5.00 Total: -1.00 -26.71 331.63 -10.74 -37.45 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -5.10 Total: 5.84 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: -3.32 Total: -25.56 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.22 Total: -35.99 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.03 Total: 15.24 kcal Atomic # 16 Polarization: 0.53 SS G_CDS: -2.51 Total: -1.98 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -26.71 -10.74 -37.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237968079.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.324 kcal (2) G-P(sol) polarization free energy of solvation -26.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds