Wall clock time and date at job start Tue Mar 31 2020 05:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35607 * 117.00146 * 2 1 4 4 C 1.39131 * 119.52848 * 180.02562 * 3 2 1 5 5 C 1.38020 * 119.26896 * 179.97438 * 4 3 2 6 6 C 1.50702 * 120.81803 * 179.97438 * 5 4 3 7 7 C 1.40219 * 118.36088 * 359.97438 * 5 4 3 8 8 C 1.47885 * 120.49875 * 180.02562 * 7 5 4 9 9 C 1.39966 * 119.89699 * 244.97354 * 8 7 5 10 10 C 1.36216 * 120.13751 * 179.97438 * 9 8 7 11 11 C 1.40982 * 119.92689 * 0.02562 * 10 9 8 12 12 C 1.41007 * 120.09581 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99793 * 204.72664 * 12 11 10 14 14 C 1.39961 * 120.00203 * 24.73494 * 12 11 10 15 15 N 1.30824 * 120.00414 * 17.97403 * 14 12 11 16 16 Si 1.86808 * 120.00045 * 197.97704 * 14 12 11 17 17 H 1.48508 * 109.46830 * 59.99624 * 16 14 12 18 18 H 1.48497 * 109.47218 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.46950 * 299.99876 * 16 14 12 20 20 C 1.40881 * 119.80097 * 0.02562 * 11 10 9 21 21 C 1.36451 * 119.85696 * 359.69898 * 20 11 10 22 22 F 1.35101 * 119.96410 * 180.29193 * 21 20 11 23 23 C 1.39527 * 118.99847 * 0.02562 * 7 5 4 24 24 N 1.31733 * 120.62129 * 0.24963 * 23 7 5 25 25 H 1.09004 * 109.47173 * 300.00691 * 1 2 3 26 26 H 1.09008 * 109.46895 * 60.00520 * 1 2 3 27 27 H 1.08996 * 109.47138 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.36375 * 0.02562 * 4 3 2 29 29 H 1.08994 * 109.47743 * 270.02369 * 6 5 4 30 30 H 1.08999 * 109.47126 * 30.02850 * 6 5 4 31 31 H 1.09002 * 109.46464 * 150.02270 * 6 5 4 32 32 H 1.08004 * 119.93478 * 0.02562 * 9 8 7 33 33 H 1.08001 * 120.03415 * 180.02562 * 10 9 8 34 34 H 0.96999 * 120.00214 * 180.02562 * 15 14 12 35 35 H 1.08002 * 120.06750 * 179.97438 * 20 11 10 36 36 H 1.07995 * 119.68685 * 179.97438 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 3.4346 1.2696 -0.0005 5 6 4.0557 2.5022 -0.0011 6 6 5.5589 2.6093 -0.0011 7 6 3.2535 3.6522 -0.0016 8 6 3.8692 4.9968 -0.0028 9 6 3.6933 5.8456 1.0962 10 6 4.2587 7.0849 1.1005 11 6 5.0221 7.5136 -0.0045 12 6 5.6085 8.7959 -0.0040 13 1 5.8376 9.2853 -0.9391 14 6 5.8938 9.4346 1.2083 15 7 5.9544 8.7399 2.3152 16 14 6.1879 11.2790 1.2459 17 1 4.9802 11.9831 0.7448 18 1 6.4675 11.7074 2.6399 19 1 7.3492 11.6126 0.3827 20 6 5.1964 6.6573 -1.1096 21 6 4.6309 5.4155 -1.1026 22 9 4.8016 4.5904 -2.1586 23 6 1.8656 3.5088 -0.0010 24 7 1.3146 2.3123 0.0049 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 4.0211 0.3628 -0.0014 29 1 5.9214 2.6352 1.0265 30 1 5.9845 1.7474 -0.5150 31 1 5.8579 3.5229 -0.5150 32 1 3.1088 5.5170 1.9429 33 1 4.1222 7.7383 1.9495 34 1 6.1517 9.1826 3.1555 35 1 5.7800 6.9815 -1.9585 36 1 1.2371 4.3871 -0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241761843.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:22 Heat of formation + Delta-G solvation = -54.639600 kcal Electronic energy + Delta-G solvation = -21765.089512 eV Core-core repulsion = 18320.726852 eV Total energy + Delta-G solvation = -3444.362659 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.106 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.63033 -41.58622 -39.57828 -38.63773 -35.76815 -34.75458 -32.95054 -31.12447 -30.44427 -29.14855 -27.78837 -26.94132 -24.38217 -23.11585 -22.78859 -21.98168 -19.57623 -18.81695 -18.14233 -17.63579 -17.09131 -16.94368 -16.88951 -16.47062 -16.35826 -15.45777 -15.18153 -14.99991 -14.67517 -14.56638 -14.20986 -13.91935 -13.66566 -13.64241 -13.40176 -12.91389 -12.87015 -12.80724 -12.66021 -12.50451 -12.17064 -12.00986 -11.88731 -11.46388 -11.07312 -10.67977 -10.44531 -9.67067 -9.40254 -9.00594 -8.74819 -6.44818 0.11033 0.24523 0.81651 0.95021 1.41036 1.50566 1.54140 2.15208 2.18391 2.57615 2.76749 3.36519 3.54952 3.72768 3.85811 3.92826 4.17436 4.22281 4.35102 4.45290 4.49146 4.56409 4.71975 4.75748 4.79930 4.86780 4.93817 5.00908 5.02688 5.10816 5.21008 5.42982 5.49207 5.62347 5.73114 5.97429 5.99318 6.20683 6.27151 6.55660 6.79479 6.83606 6.88310 8.20329 Molecular weight = 287.11amu Principal moments of inertia in cm(-1) A = 0.032645 B = 0.003807 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.516934 B = 7352.531649 C = 7640.652081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.318 6.318 3 C 0.296 3.704 4 C -0.190 4.190 5 C -0.008 4.008 6 C -0.114 4.114 7 C -0.105 4.105 8 C -0.210 4.210 9 C -0.054 4.054 10 C -0.190 4.190 11 C 0.112 3.888 12 C -0.481 4.481 13 H 0.083 0.917 14 C 0.041 3.959 15 N -0.804 5.804 16 Si 0.984 3.016 17 H -0.259 1.259 18 H -0.265 1.265 19 H -0.260 1.260 20 C -0.283 4.283 21 C 0.137 3.863 22 F -0.159 7.159 23 C 0.137 3.863 24 N -0.550 5.550 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.126 0.874 28 H 0.161 0.839 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.295 0.705 35 H 0.106 0.894 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.776 -9.092 -0.335 10.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.225 6.225 3 C 0.118 3.882 4 C -0.210 4.210 5 C -0.015 4.015 6 C -0.170 4.170 7 C -0.107 4.107 8 C -0.212 4.212 9 C -0.073 4.073 10 C -0.209 4.209 11 C 0.109 3.891 12 C -0.509 4.509 13 H 0.101 0.899 14 C -0.178 4.178 15 N -0.428 5.428 16 Si 0.805 3.195 17 H -0.183 1.183 18 H -0.190 1.190 19 H -0.184 1.184 20 C -0.303 4.303 21 C 0.118 3.882 22 F -0.138 7.138 23 C -0.018 4.018 24 N -0.274 5.274 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.144 0.856 28 H 0.179 0.821 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.076 0.924 32 H 0.135 0.865 33 H 0.131 0.869 34 H 0.106 0.894 35 H 0.124 0.876 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.518 -9.485 -0.107 10.974 hybrid contribution 0.881 0.976 -0.155 1.324 sum -4.637 -8.509 -0.261 9.694 Atomic orbital electron populations 1.23039 0.76038 1.04593 1.02067 1.86174 1.24226 1.24016 1.88096 1.20054 0.89747 0.84925 0.93521 1.20991 0.91794 0.99057 1.09171 1.20499 0.97421 0.91295 0.92326 1.20859 0.89310 1.03510 1.03365 1.19498 0.94005 0.92780 1.04427 1.17808 1.11131 0.95536 0.96765 1.20474 0.97967 0.93084 0.95754 1.21013 1.01999 0.97131 1.00749 1.17704 0.88647 0.92308 0.90438 1.19876 1.35649 1.00861 0.94466 0.89913 1.26801 0.91694 1.05241 0.94031 1.69833 1.32194 1.39930 1.00873 0.85203 0.79951 0.75618 0.78772 1.18317 1.18956 1.18379 1.20712 1.11555 0.94643 1.03423 1.17242 0.98810 0.88230 0.83913 1.91344 1.94219 1.72256 1.56007 1.22731 0.92017 0.93573 0.93459 1.67223 1.40903 0.98829 1.20456 0.92744 0.92864 0.85607 0.82144 0.89806 0.88928 0.92409 0.86540 0.86906 0.89391 0.87630 0.81611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.37 113.37 1.18 1.93 16 2 O -0.32 -8.67 10.47 -89.18 -0.93 -9.60 16 3 C 0.30 9.33 7.49 84.83 0.64 9.97 16 4 C -0.19 -5.72 9.73 22.43 0.22 -5.50 16 5 C -0.01 -0.27 5.77 -19.43 -0.11 -0.38 16 6 C -0.11 -3.52 9.57 71.24 0.68 -2.84 16 7 C -0.10 -3.92 5.00 -19.93 -0.10 -4.02 16 8 C -0.21 -8.88 4.73 -19.83 -0.09 -8.97 16 9 C -0.05 -2.36 9.67 22.22 0.21 -2.15 16 10 C -0.19 -9.22 8.63 22.47 0.19 -9.02 16 11 C 0.11 5.69 5.57 -21.28 -0.12 5.58 16 12 C -0.48 -24.11 9.03 23.37 0.21 -23.90 16 13 H 0.08 3.99 7.91 -2.91 -0.02 3.97 16 14 C 0.04 1.88 5.13 85.26 0.44 2.31 16 15 N -0.80 -38.47 10.96 21.83 0.24 -38.23 16 16 Si 0.98 34.93 29.60 68.60 2.03 36.96 16 17 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 18 H -0.27 -8.87 7.11 99.48 0.71 -8.16 16 19 H -0.26 -9.00 7.11 99.48 0.71 -8.30 16 20 C -0.28 -13.69 9.70 22.50 0.22 -13.47 16 21 C 0.14 6.19 5.78 22.32 0.13 6.32 16 22 F -0.16 -6.88 15.55 44.97 0.70 -6.18 16 23 C 0.14 4.77 10.91 85.02 0.93 5.69 16 24 N -0.55 -18.33 9.18 -307.72 -2.83 -21.15 16 25 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 26 H 0.05 1.12 8.10 -2.38 -0.02 1.10 16 27 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.16 3.89 8.06 -2.91 -0.02 3.86 16 29 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.09 2.29 8.10 -2.39 -0.02 2.27 16 31 H 0.06 2.10 4.93 -2.39 -0.01 2.08 16 32 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 33 H 0.11 5.65 6.16 -2.91 -0.02 5.63 16 34 H 0.30 12.65 8.30 -92.71 -0.77 11.88 16 35 H 0.11 4.94 8.06 -2.91 -0.02 4.91 16 36 H 0.17 5.30 8.06 -2.91 -0.02 5.27 16 Total: -1.00 -55.77 314.26 4.94 -50.83 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 1.11 Total: 25.83 kcal Atomic # 6 Polarization: -43.08 SS G_CDS: 4.62 Total: -38.46 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: -2.59 Total: -59.38 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -0.93 Total: -9.60 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 0.70 Total: -6.18 kcal Atomic # 14 Polarization: 34.93 SS G_CDS: 2.03 Total: 36.96 kcal Total: -55.77 4.94 -50.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241761843.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.805 kcal (2) G-P(sol) polarization free energy of solvation -55.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds