Wall clock time and date at job start Tue Mar 31 2020 05:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35604 * 116.99568 * 2 1 4 4 C 1.39128 * 119.51564 * 180.27379 * 3 2 1 5 5 C 1.38018 * 119.26684 * 180.27267 * 4 3 2 6 6 C 1.50700 * 120.82136 * 179.73094 * 5 4 3 7 7 C 1.40242 * 118.35815 * 359.46609 * 5 4 3 8 8 C 1.47816 * 120.50282 * 180.24770 * 7 5 4 9 9 C 1.39093 * 120.32216 * 244.99838 * 8 7 5 10 10 C 1.38353 * 119.95263 * 180.02562 * 9 8 7 11 11 F 1.35099 * 119.69131 * 179.97438 * 10 9 8 12 12 C 1.39236 * 120.61863 * 0.02562 * 10 9 8 13 13 C 1.36337 * 120.65990 * 359.97438 * 12 10 9 14 14 C 1.40792 * 120.01804 * 359.71620 * 13 12 10 15 15 C 1.40800 * 120.30474 * 180.28480 * 14 13 12 16 16 H 1.08007 * 120.00224 * 205.06217 * 15 14 13 17 17 C 1.40020 * 120.00260 * 25.05947 * 15 14 13 18 18 N 1.30813 * 119.99668 * 17.47042 * 17 15 14 19 19 Si 1.86804 * 120.00153 * 197.47827 * 17 15 14 20 20 H 1.48498 * 109.47146 * 89.99987 * 19 17 15 21 21 H 1.48500 * 109.46632 * 209.99706 * 19 17 15 22 22 H 1.48495 * 109.46952 * 329.99618 * 19 17 15 23 23 C 1.39535 * 118.99058 * 0.26863 * 7 5 4 24 24 N 1.31730 * 120.62558 * 0.02562 * 23 7 5 25 25 H 1.08996 * 109.47002 * 59.99774 * 1 2 3 26 26 H 1.08999 * 109.47023 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47086 * 299.99819 * 1 2 3 28 28 H 1.08001 * 120.36770 * 0.02562 * 4 3 2 29 29 H 1.08996 * 109.47499 * 269.72470 * 6 5 4 30 30 H 1.09011 * 109.46836 * 149.72378 * 6 5 4 31 31 H 1.09003 * 109.47083 * 29.72826 * 6 5 4 32 32 H 1.07995 * 120.02365 * 359.97438 * 9 8 7 33 33 H 1.07995 * 119.66794 * 179.97438 * 12 10 9 34 34 H 1.07998 * 119.98820 * 180.02562 * 13 12 10 35 35 H 0.97003 * 120.00374 * 179.97438 * 18 17 15 36 36 H 1.08004 * 119.68529 * 180.02562 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 6 3.4345 1.2695 -0.0058 5 6 4.0557 2.5019 0.0000 6 6 5.5589 2.6090 0.0001 7 6 3.2534 3.6522 0.0000 8 6 3.8689 4.9962 0.0006 9 6 3.6995 5.8457 1.0889 10 6 4.2785 7.1022 1.0811 11 9 4.1102 7.9232 2.1407 12 6 5.0322 7.5290 -0.0091 13 6 5.2143 6.7169 -1.0890 14 6 4.6429 5.4303 -1.1072 15 6 4.8321 4.5844 -2.2168 16 1 4.1129 3.8083 -2.4331 17 6 5.9527 4.7495 -3.0399 18 7 6.9830 5.4331 -2.6128 19 14 5.9765 3.9936 -4.7480 20 1 5.4240 4.9644 -5.7266 21 1 7.3738 3.6562 -5.1205 22 1 5.1506 2.7595 -4.7547 23 6 1.8655 3.5087 0.0000 24 7 1.3146 2.3122 0.0004 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.0210 0.3625 -0.0107 29 1 5.9213 2.6348 1.0277 30 1 5.8581 3.5226 -0.5138 31 1 5.9846 1.7471 -0.5138 32 1 3.1158 5.5249 1.9390 33 1 5.4769 8.5130 0.0008 34 1 5.8013 7.0588 -1.9286 35 1 7.7595 5.5472 -3.1828 36 1 1.2370 4.3871 -0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241761871.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:58 Heat of formation + Delta-G solvation = -41.218616 kcal Electronic energy + Delta-G solvation = -22246.355889 eV Core-core repulsion = 18802.575207 eV Total energy + Delta-G solvation = -3443.780682 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.106 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -47.54593 -40.15432 -38.19988 -36.92668 -33.88127 -33.27617 -31.41006 -29.60561 -28.76643 -27.32809 -26.43024 -25.13023 -23.14733 -21.43531 -21.20049 -20.11631 -17.55450 -17.39399 -16.62039 -16.39195 -15.70401 -15.52593 -14.75883 -14.41274 -14.30910 -14.03304 -13.95750 -13.74608 -13.25247 -12.84403 -12.33687 -12.23426 -12.15662 -12.06640 -11.89939 -11.64843 -11.30454 -11.21768 -11.10689 -10.88736 -10.74414 -10.49135 -10.11370 -9.75309 -9.32749 -9.11487 -8.84603 -8.04754 -7.59114 -7.38315 -7.01979 -4.57637 1.67580 1.83458 2.49236 2.68634 2.95351 2.99277 3.01770 3.45061 3.75135 4.27642 4.35472 4.81803 5.27989 5.36253 5.45388 5.46390 5.48740 5.64799 5.71822 5.78798 5.89632 5.98977 6.12681 6.22101 6.32679 6.36313 6.51773 6.76198 6.84231 6.88157 6.99797 7.04505 7.24251 7.28170 7.46550 7.67770 7.70747 7.79079 7.97701 8.32034 8.38538 8.57634 8.65424 9.87906 Molecular weight = 287.11amu Principal moments of inertia in cm(-1) A = 0.011853 B = 0.007281 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.734508 B = 3844.669634 C = 5624.146629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.316 6.316 3 C 0.295 3.705 4 C -0.196 4.196 5 C 0.015 3.985 6 C -0.127 4.127 7 C -0.066 4.066 8 C -0.159 4.159 9 C -0.095 4.095 10 C -0.046 4.046 11 F -0.174 7.174 12 C -0.123 4.123 13 C -0.138 4.138 14 C 0.122 3.878 15 C -0.438 4.438 16 H 0.083 0.917 17 C 0.078 3.922 18 N -0.780 5.780 19 Si 0.905 3.095 20 H -0.265 1.265 21 H -0.275 1.275 22 H -0.259 1.259 23 C 0.129 3.871 24 N -0.547 5.547 25 H 0.055 0.945 26 H 0.088 0.912 27 H 0.054 0.946 28 H 0.131 0.869 29 H 0.063 0.937 30 H 0.117 0.883 31 H 0.057 0.943 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.128 0.872 35 H 0.286 0.714 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.869 -5.454 0.949 6.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.224 6.224 3 C 0.117 3.883 4 C -0.217 4.217 5 C 0.007 3.993 6 C -0.183 4.183 7 C -0.069 4.069 8 C -0.162 4.162 9 C -0.114 4.114 10 C -0.066 4.066 11 F -0.153 7.153 12 C -0.143 4.143 13 C -0.157 4.157 14 C 0.119 3.881 15 C -0.466 4.466 16 H 0.101 0.899 17 C -0.143 4.143 18 N -0.404 5.404 19 Si 0.729 3.271 20 H -0.190 1.190 21 H -0.200 1.200 22 H -0.183 1.183 23 C -0.026 4.026 24 N -0.271 5.271 25 H 0.073 0.927 26 H 0.106 0.894 27 H 0.073 0.927 28 H 0.149 0.851 29 H 0.082 0.918 30 H 0.135 0.865 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.146 0.854 35 H 0.097 0.903 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.422 -5.716 0.913 7.284 hybrid contribution 0.666 0.000 -0.586 0.887 sum -3.756 -5.717 0.327 6.848 Atomic orbital electron populations 1.22716 0.78211 1.02019 1.02193 1.86160 1.22145 1.25371 1.88751 1.19735 0.89209 0.84379 0.95013 1.20797 0.91523 0.98836 1.10511 1.20295 0.97137 0.90671 0.91163 1.21090 0.89451 1.05745 1.01983 1.19405 0.92802 0.93543 1.01102 1.18038 1.10103 0.92318 0.95705 1.20494 1.00350 0.92562 0.97958 1.17157 1.10926 0.90998 0.87495 1.91291 1.95318 1.72546 1.56151 1.20496 0.99926 0.99663 0.94172 1.20944 1.03333 0.93354 0.98044 1.17523 0.88713 0.91374 0.90471 1.19505 1.05942 1.14158 1.07042 0.89925 1.25958 0.94525 0.93948 0.99827 1.69778 1.03555 1.30518 1.36544 0.86327 0.78606 0.80580 0.81630 1.19005 1.20012 1.18308 1.22560 0.92408 0.92816 0.94781 1.67125 1.40792 0.98809 1.20357 0.92652 0.89386 0.92728 0.85066 0.91822 0.86488 0.92387 0.88029 0.88155 0.85394 0.90263 0.82908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.37 101.05 1.05 1.60 16 2 O -0.32 -5.15 10.47 -18.51 -0.19 -5.34 16 3 C 0.29 5.37 7.49 -17.00 -0.13 5.24 16 4 C -0.20 -3.51 9.72 -39.33 -0.38 -3.90 16 5 C 0.01 0.28 5.34 -103.95 -0.56 -0.27 16 6 C -0.13 -2.35 9.36 36.01 0.34 -2.01 16 7 C -0.07 -1.34 4.39 -104.74 -0.46 -1.80 16 8 C -0.16 -3.47 4.74 -104.25 -0.49 -3.97 16 9 C -0.09 -2.03 9.71 -39.22 -0.38 -2.41 16 10 C -0.05 -1.03 7.31 -39.17 -0.29 -1.31 16 11 F -0.17 -3.79 17.26 2.25 0.04 -3.75 16 12 C -0.12 -2.73 9.94 -39.90 -0.40 -3.13 16 13 C -0.14 -3.19 8.63 -39.30 -0.34 -3.53 16 14 C 0.12 2.84 4.60 -106.55 -0.49 2.35 16 15 C -0.44 -10.08 6.16 -37.95 -0.23 -10.32 16 16 H 0.08 1.94 7.06 -52.48 -0.37 1.57 16 17 C 0.08 1.71 5.14 -17.32 -0.09 1.62 16 18 N -0.78 -17.53 10.97 55.55 0.61 -16.92 16 19 Si 0.90 17.09 29.60 -169.99 -5.03 12.06 16 20 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 21 H -0.28 -5.09 7.11 56.52 0.40 -4.69 16 22 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 23 C 0.13 2.44 10.91 -17.11 -0.19 2.26 16 24 N -0.55 -10.18 9.18 -12.95 -0.12 -10.30 16 25 H 0.05 0.71 8.10 -51.93 -0.42 0.28 16 26 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.68 8.10 -51.93 -0.42 0.26 16 28 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.12 2.52 4.48 -51.92 -0.23 2.29 16 31 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 32 H 0.10 2.02 8.06 -52.49 -0.42 1.59 16 33 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 34 H 0.13 3.02 6.18 -52.49 -0.32 2.69 16 35 H 0.29 5.89 8.30 -40.82 -0.34 5.55 16 36 H 0.15 2.65 8.06 -52.48 -0.42 2.22 16 LS Contribution 311.42 15.07 4.69 4.69 Total: -1.00 -24.82 311.42 -6.90 -31.72 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -3.86 Total: 7.41 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: -3.03 Total: -19.58 kcal Atomic # 7 Polarization: -27.71 SS G_CDS: 0.49 Total: -27.22 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.19 Total: -5.34 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.04 Total: -3.75 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.06 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -24.82 -6.90 -31.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241761871.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.497 kcal (2) G-P(sol) polarization free energy of solvation -24.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds