Wall clock time and date at job start Tue Mar 31 2020 05:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35604 * 116.99568 * 2 1 4 4 C 1.39128 * 119.51564 * 180.27379 * 3 2 1 5 5 C 1.38018 * 119.26684 * 180.27267 * 4 3 2 6 6 C 1.50700 * 120.82136 * 179.73094 * 5 4 3 7 7 C 1.40242 * 118.35815 * 359.46609 * 5 4 3 8 8 C 1.47816 * 120.50282 * 180.24770 * 7 5 4 9 9 C 1.39093 * 120.32216 * 244.99838 * 8 7 5 10 10 C 1.38353 * 119.95263 * 180.02562 * 9 8 7 11 11 F 1.35099 * 119.69131 * 179.97438 * 10 9 8 12 12 C 1.39236 * 120.61863 * 0.02562 * 10 9 8 13 13 C 1.36337 * 120.65990 * 359.97438 * 12 10 9 14 14 C 1.40792 * 120.01804 * 359.71620 * 13 12 10 15 15 C 1.40800 * 120.30474 * 180.28480 * 14 13 12 16 16 H 1.08007 * 120.00224 * 205.06217 * 15 14 13 17 17 C 1.40020 * 120.00260 * 25.05947 * 15 14 13 18 18 N 1.30813 * 119.99668 * 17.47042 * 17 15 14 19 19 Si 1.86804 * 120.00153 * 197.47827 * 17 15 14 20 20 H 1.48498 * 109.47146 * 89.99987 * 19 17 15 21 21 H 1.48500 * 109.46632 * 209.99706 * 19 17 15 22 22 H 1.48495 * 109.46952 * 329.99618 * 19 17 15 23 23 C 1.39535 * 118.99058 * 0.26863 * 7 5 4 24 24 N 1.31730 * 120.62558 * 0.02562 * 23 7 5 25 25 H 1.08996 * 109.47002 * 59.99774 * 1 2 3 26 26 H 1.08999 * 109.47023 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47086 * 299.99819 * 1 2 3 28 28 H 1.08001 * 120.36770 * 0.02562 * 4 3 2 29 29 H 1.08996 * 109.47499 * 269.72470 * 6 5 4 30 30 H 1.09011 * 109.46836 * 149.72378 * 6 5 4 31 31 H 1.09003 * 109.47083 * 29.72826 * 6 5 4 32 32 H 1.07995 * 120.02365 * 359.97438 * 9 8 7 33 33 H 1.07995 * 119.66794 * 179.97438 * 12 10 9 34 34 H 1.07998 * 119.98820 * 180.02562 * 13 12 10 35 35 H 0.97003 * 120.00374 * 179.97438 * 18 17 15 36 36 H 1.08004 * 119.68529 * 180.02562 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 6 3.4345 1.2695 -0.0058 5 6 4.0557 2.5019 0.0000 6 6 5.5589 2.6090 0.0001 7 6 3.2534 3.6522 0.0000 8 6 3.8689 4.9962 0.0006 9 6 3.6995 5.8457 1.0889 10 6 4.2785 7.1022 1.0811 11 9 4.1102 7.9232 2.1407 12 6 5.0322 7.5290 -0.0091 13 6 5.2143 6.7169 -1.0890 14 6 4.6429 5.4303 -1.1072 15 6 4.8321 4.5844 -2.2168 16 1 4.1129 3.8083 -2.4331 17 6 5.9527 4.7495 -3.0399 18 7 6.9830 5.4331 -2.6128 19 14 5.9765 3.9936 -4.7480 20 1 5.4240 4.9644 -5.7266 21 1 7.3738 3.6562 -5.1205 22 1 5.1506 2.7595 -4.7547 23 6 1.8655 3.5087 0.0000 24 7 1.3146 2.3122 0.0004 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.0210 0.3625 -0.0107 29 1 5.9213 2.6348 1.0277 30 1 5.8581 3.5226 -0.5138 31 1 5.9846 1.7471 -0.5138 32 1 3.1158 5.5249 1.9390 33 1 5.4769 8.5130 0.0008 34 1 5.8013 7.0588 -1.9286 35 1 7.7595 5.5472 -3.1828 36 1 1.2370 4.3871 -0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241761871.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:57 Heat of formation + Delta-G solvation = -53.006157 kcal Electronic energy + Delta-G solvation = -22246.867036 eV Core-core repulsion = 18802.575207 eV Total energy + Delta-G solvation = -3444.291828 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.106 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.28372 -41.57068 -39.70939 -38.40921 -35.57598 -34.75423 -32.95616 -31.32953 -30.22107 -28.81587 -27.62110 -26.82918 -24.67022 -22.94705 -22.86415 -21.69622 -19.27092 -18.73327 -18.13674 -17.93898 -17.25625 -16.89438 -16.42362 -16.04689 -16.00452 -15.55079 -15.33300 -15.08400 -14.68139 -14.48538 -13.90605 -13.87192 -13.63205 -13.51692 -13.47400 -12.86640 -12.84699 -12.75654 -12.66368 -12.37143 -12.20951 -12.00822 -11.73953 -11.41437 -10.99083 -10.60875 -10.30032 -9.63098 -9.27379 -9.01916 -8.68264 -6.32005 0.20255 0.36348 0.80373 0.98037 1.41186 1.48097 1.50709 2.18365 2.21442 2.61273 2.85909 3.44225 3.56479 3.86552 4.01776 4.14089 4.28312 4.29247 4.33321 4.47345 4.51527 4.56792 4.71218 4.79767 4.88974 4.92731 5.01469 5.05729 5.15137 5.27485 5.36418 5.51934 5.59445 5.73597 5.80233 5.93050 6.04886 6.25121 6.33635 6.58094 6.84755 6.90425 6.95437 8.23381 Molecular weight = 287.11amu Principal moments of inertia in cm(-1) A = 0.011853 B = 0.007281 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.734508 B = 3844.669634 C = 5624.146629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.320 6.320 3 C 0.293 3.707 4 C -0.197 4.197 5 C 0.008 3.992 6 C -0.123 4.123 7 C -0.089 4.089 8 C -0.154 4.154 9 C -0.097 4.097 10 C -0.060 4.060 11 F -0.172 7.172 12 C -0.126 4.126 13 C -0.156 4.156 14 C 0.105 3.895 15 C -0.448 4.448 16 H 0.072 0.928 17 C 0.050 3.950 18 N -0.801 5.801 19 Si 0.962 3.038 20 H -0.264 1.264 21 H -0.266 1.266 22 H -0.264 1.264 23 C 0.129 3.871 24 N -0.551 5.551 25 H 0.051 0.949 26 H 0.125 0.875 27 H 0.054 0.946 28 H 0.154 0.846 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.294 0.706 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.371 -7.011 0.686 8.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.228 6.228 3 C 0.115 3.885 4 C -0.218 4.218 5 C 0.001 3.999 6 C -0.179 4.179 7 C -0.091 4.091 8 C -0.156 4.156 9 C -0.116 4.116 10 C -0.080 4.080 11 F -0.152 7.152 12 C -0.145 4.145 13 C -0.175 4.175 14 C 0.103 3.897 15 C -0.476 4.476 16 H 0.091 0.909 17 C -0.168 4.168 18 N -0.425 5.425 19 Si 0.784 3.216 20 H -0.189 1.189 21 H -0.190 1.190 22 H -0.188 1.188 23 C -0.026 4.026 24 N -0.275 5.275 25 H 0.070 0.930 26 H 0.143 0.857 27 H 0.073 0.927 28 H 0.172 0.828 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.105 0.895 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.929 -7.274 0.662 8.812 hybrid contribution 0.756 0.406 -0.458 0.973 sum -4.173 -6.868 0.204 8.039 Atomic orbital electron populations 1.23014 0.76170 1.04463 1.02004 1.86166 1.24145 1.24188 1.88288 1.19982 0.89625 0.84884 0.94055 1.21000 0.91825 0.99115 1.09811 1.20399 0.97345 0.90989 0.91195 1.21010 0.89397 1.05010 1.02443 1.19417 0.93507 0.93101 1.03086 1.18192 1.09233 0.93074 0.95128 1.20684 1.00218 0.92303 0.98387 1.17296 1.11491 0.91480 0.87706 1.91287 1.95349 1.72528 1.56000 1.20638 0.99771 1.00237 0.93874 1.20909 1.04362 0.93877 0.98339 1.17760 0.89270 0.91547 0.91169 1.19473 1.06248 1.14170 1.07713 0.90941 1.26519 0.93876 0.94173 1.02277 1.69800 1.04019 1.30990 1.37678 0.85468 0.78802 0.79471 0.77853 1.18918 1.18993 1.18819 1.22699 0.92108 0.93478 0.94311 1.67179 1.40836 0.98804 1.20682 0.92998 0.85711 0.92726 0.82806 0.90825 0.89415 0.90592 0.86550 0.86669 0.86323 0.89501 0.81847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.86 10.37 113.37 1.18 2.03 16 2 O -0.32 -9.63 10.47 -89.14 -0.93 -10.56 16 3 C 0.29 10.12 7.49 84.83 0.64 10.76 16 4 C -0.20 -6.70 9.72 22.43 0.22 -6.48 16 5 C 0.01 0.30 5.34 -19.43 -0.10 0.20 16 6 C -0.12 -4.46 9.36 71.24 0.67 -3.79 16 7 C -0.09 -3.54 4.39 -19.94 -0.09 -3.63 16 8 C -0.15 -6.73 4.74 -19.62 -0.09 -6.82 16 9 C -0.10 -4.15 9.71 22.50 0.22 -3.93 16 10 C -0.06 -2.67 7.31 22.54 0.16 -2.50 16 11 F -0.17 -7.41 17.26 44.97 0.78 -6.64 16 12 C -0.13 -5.62 9.94 22.07 0.22 -5.40 16 13 C -0.16 -7.34 8.63 22.45 0.19 -7.15 16 14 C 0.11 4.96 4.60 -21.11 -0.10 4.87 16 15 C -0.45 -20.78 6.16 23.33 0.14 -20.64 16 16 H 0.07 3.44 7.06 -2.91 -0.02 3.42 16 17 C 0.05 2.20 5.14 85.28 0.44 2.64 16 18 N -0.80 -36.10 10.97 21.84 0.24 -35.86 16 19 Si 0.96 34.55 29.60 68.60 2.03 36.58 16 20 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 21 H -0.27 -9.06 7.11 99.48 0.71 -8.36 16 22 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 23 C 0.13 4.77 10.91 85.02 0.93 5.70 16 24 N -0.55 -19.72 9.18 -307.73 -2.82 -22.55 16 25 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 26 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.05 1.23 8.10 -2.39 -0.02 1.22 16 28 H 0.15 4.42 8.06 -2.91 -0.02 4.40 16 29 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.09 3.80 4.48 -2.38 -0.01 3.79 16 31 H 0.08 2.41 8.10 -2.39 -0.02 2.39 16 32 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 33 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 34 H 0.12 5.74 6.18 -2.91 -0.02 5.72 16 35 H 0.29 12.02 8.30 -92.71 -0.77 11.25 16 36 H 0.16 5.55 8.06 -2.91 -0.02 5.52 16 Total: -1.00 -51.84 311.42 5.02 -46.82 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 1.11 Total: 26.36 kcal Atomic # 6 Polarization: -38.79 SS G_CDS: 4.62 Total: -34.16 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -2.59 Total: -58.41 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -0.93 Total: -10.56 kcal Atomic # 9 Polarization: -7.41 SS G_CDS: 0.78 Total: -6.64 kcal Atomic # 14 Polarization: 34.55 SS G_CDS: 2.03 Total: 36.58 kcal Total: -51.84 5.02 -46.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241761871.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.183 kcal (2) G-P(sol) polarization free energy of solvation -51.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds