Wall clock time and date at job start Tue Mar 31 2020 05:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35679 * 117.00229 * 2 1 4 4 C 1.38666 * 119.61742 * 179.97438 * 3 2 1 5 5 C 1.39759 * 118.93766 * 179.97438 * 4 3 2 6 6 C 1.48003 * 120.89512 * 180.02562 * 5 4 3 7 7 C 1.39908 * 119.89274 * 129.72520 * 6 5 4 8 8 C 1.36256 * 120.14230 * 180.27197 * 7 6 5 9 9 C 1.40958 * 119.92915 * 0.02562 * 8 7 6 10 10 C 1.41059 * 120.10448 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99833 * 24.65848 * 10 9 8 12 12 C 1.40047 * 120.00124 * 204.66730 * 10 9 8 13 13 N 1.30768 * 119.99843 * 17.93867 * 12 10 9 14 14 Si 1.86800 * 119.99798 * 197.94388 * 12 10 9 15 15 H 1.48504 * 109.47404 * 89.99796 * 14 12 10 16 16 H 1.48503 * 109.46878 * 209.99359 * 14 12 10 17 17 H 1.48492 * 109.47152 * 329.99249 * 14 12 10 18 18 C 1.40833 * 119.78872 * 359.97438 * 9 8 7 19 19 C 1.36523 * 119.85777 * 0.02562 * 18 9 8 20 20 F 1.35103 * 119.96704 * 179.97438 * 19 18 9 21 21 C 1.40153 * 118.20964 * 0.27864 * 5 4 3 22 22 C 1.37774 * 119.11885 * 359.47329 * 21 5 4 23 23 C 1.50697 * 119.50971 * 180.25275 * 22 21 5 24 24 N 1.32034 * 120.98109 * 0.53860 * 22 21 5 25 25 H 1.08996 * 109.47427 * 300.00045 * 1 2 3 26 26 H 1.09003 * 109.46657 * 59.99928 * 1 2 3 27 27 H 1.09000 * 109.47598 * 179.97438 * 1 2 3 28 28 H 1.07991 * 120.53259 * 0.02562 * 4 3 2 29 29 H 1.08001 * 119.92686 * 0.27798 * 7 6 5 30 30 H 1.08005 * 120.03284 * 179.97438 * 8 7 6 31 31 H 0.97003 * 119.99751 * 180.02562 * 13 12 10 32 32 H 1.07999 * 120.06963 * 180.02562 * 18 9 8 33 33 H 1.07995 * 120.44058 * 179.70373 * 21 5 4 34 34 H 1.08997 * 109.46990 * 270.27833 * 23 22 21 35 35 H 1.08992 * 109.46977 * 30.28431 * 23 22 21 36 36 H 1.08999 * 109.47140 * 150.28252 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4302 1.2722 0.0005 5 6 4.0500 2.5248 0.0000 6 6 5.5253 2.6428 0.0000 7 6 6.1585 3.4707 -0.9333 8 6 7.5168 3.5788 -0.9415 9 6 8.2856 2.8546 -0.0080 10 6 9.6919 2.9642 -0.0128 11 1 10.1633 3.8479 -0.4168 12 6 10.4769 1.9270 0.5062 13 7 9.9622 0.7358 0.6683 14 14 12.2590 2.2452 0.9669 15 1 12.3339 2.6776 2.3857 16 1 13.0468 0.9993 0.7870 17 1 12.8130 3.3115 0.0945 18 6 7.6451 2.0221 0.9301 19 6 6.2836 1.9202 0.9305 20 9 5.6669 1.1219 1.8292 21 6 3.2367 3.6663 0.0049 22 6 1.8675 3.5140 -0.0010 23 6 0.9847 4.7354 -0.0016 24 7 1.3171 2.3138 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 4.0207 0.3680 0.0005 29 1 5.5695 4.0254 -1.6487 30 1 8.0038 4.2182 -1.6630 31 1 10.5059 0.0175 1.0281 32 1 8.2296 1.4655 1.6476 33 1 3.6776 4.6522 0.0095 34 1 0.7718 5.0302 1.0260 35 1 1.4932 5.5508 -0.5157 36 1 0.0506 4.5083 -0.5153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242748795.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:34 Heat of formation + Delta-G solvation = -43.726862 kcal Electronic energy + Delta-G solvation = -21583.015740 eV Core-core repulsion = 18139.126292 eV Total energy + Delta-G solvation = -3443.889448 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.106 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -47.75688 -40.20993 -37.98455 -37.28587 -34.29984 -32.71654 -31.55851 -29.37010 -29.26771 -28.03277 -26.35481 -25.67162 -22.66804 -22.05303 -21.15437 -20.08470 -17.82373 -17.66311 -16.42808 -15.91834 -15.76182 -15.48146 -14.96582 -14.74932 -14.60687 -14.39592 -13.89662 -13.81801 -13.32158 -13.03018 -12.74125 -12.32223 -12.22865 -12.13264 -11.94976 -11.80048 -11.42407 -11.36467 -11.24563 -10.86781 -10.77889 -10.51990 -10.18455 -9.93123 -9.56644 -9.24445 -9.05779 -8.04347 -7.67567 -7.49194 -7.06992 -4.68258 1.51132 1.62686 2.52328 2.76956 2.92467 2.96101 3.00163 3.38067 3.70632 4.11382 4.34173 4.48904 5.07985 5.31599 5.35346 5.40197 5.49416 5.51497 5.57768 5.66597 5.69196 5.72459 5.76552 5.92312 6.08315 6.24087 6.33711 6.52628 6.70933 6.74219 6.82342 6.90960 7.01902 7.36762 7.48474 7.57965 7.62225 7.72336 7.97264 8.25420 8.29312 8.52919 8.59868 9.83561 Molecular weight = 287.11amu Principal moments of inertia in cm(-1) A = 0.029030 B = 0.003897 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.293188 B = 7183.243481 C = 7841.821779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.311 6.311 3 C 0.319 3.681 4 C -0.195 4.195 5 C 0.091 3.909 6 C -0.250 4.250 7 C -0.035 4.035 8 C -0.234 4.234 9 C 0.137 3.863 10 C -0.439 4.439 11 H 0.088 0.912 12 C 0.072 3.928 13 N -0.769 5.769 14 Si 0.916 3.084 15 H -0.264 1.264 16 H -0.275 1.275 17 H -0.258 1.258 18 C -0.210 4.210 19 C 0.141 3.859 20 F -0.160 7.160 21 C -0.210 4.210 22 C 0.155 3.845 23 C -0.098 4.098 24 N -0.560 5.560 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.090 0.910 28 H 0.135 0.865 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.288 0.712 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.625 2.877 -0.705 10.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.219 6.219 3 C 0.141 3.859 4 C -0.216 4.216 5 C 0.083 3.917 6 C -0.252 4.252 7 C -0.053 4.053 8 C -0.254 4.254 9 C 0.133 3.867 10 C -0.467 4.467 11 H 0.106 0.894 12 C -0.149 4.149 13 N -0.392 5.392 14 Si 0.739 3.261 15 H -0.189 1.189 16 H -0.200 1.200 17 H -0.182 1.182 18 C -0.231 4.231 19 C 0.121 3.879 20 F -0.139 7.139 21 C -0.231 4.231 22 C 0.020 3.980 23 C -0.155 4.155 24 N -0.286 5.286 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.108 0.892 28 H 0.153 0.847 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.100 0.900 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.386 2.237 -0.608 10.642 hybrid contribution 1.356 -0.117 0.367 1.409 sum -9.030 2.120 -0.241 9.279 Atomic orbital electron populations 1.22734 0.78153 1.02226 1.02051 1.86244 1.22184 1.25064 1.88396 1.19581 0.89086 0.84190 0.93009 1.21205 0.91319 0.99374 1.09666 1.18899 0.93300 0.90985 0.88478 1.17804 0.89041 1.11726 1.06656 1.20132 0.94381 0.95212 0.95608 1.20715 0.93034 1.08673 1.02967 1.17460 0.93306 0.88210 0.87708 1.19774 0.91087 1.02875 1.32942 0.89356 1.26114 1.01994 0.94119 0.92701 1.69789 1.39005 1.01161 1.29223 0.86170 0.80437 0.79263 0.80210 1.18870 1.19950 1.18214 1.20951 0.90631 1.07555 1.03920 1.17331 0.90836 0.91175 0.88550 1.91364 1.83836 1.72103 1.66600 1.21895 0.93193 0.99494 1.08470 1.20643 0.91854 0.91508 0.93991 1.20655 0.98854 0.93310 1.02721 1.66935 1.40969 0.98315 1.22364 0.92701 0.92712 0.89204 0.84678 0.88117 0.87917 0.90025 0.85158 0.84951 0.90739 0.90730 0.91008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.38 101.05 1.05 1.59 16 2 O -0.31 -5.27 10.47 -18.74 -0.20 -5.46 16 3 C 0.32 5.93 7.48 -17.19 -0.13 5.80 16 4 C -0.19 -3.91 8.91 -38.86 -0.35 -4.25 16 5 C 0.09 1.83 5.32 -104.61 -0.56 1.27 16 6 C -0.25 -5.54 5.54 -104.56 -0.58 -6.12 16 7 C -0.03 -0.73 9.48 -39.67 -0.38 -1.11 16 8 C -0.23 -5.26 9.73 -39.27 -0.38 -5.64 16 9 C 0.14 3.38 5.57 -106.82 -0.60 2.79 16 10 C -0.44 -10.63 9.03 -37.83 -0.34 -10.97 16 11 H 0.09 2.01 7.91 -52.49 -0.42 1.59 16 12 C 0.07 1.67 5.13 -17.33 -0.09 1.58 16 13 N -0.77 -18.58 10.96 55.55 0.61 -17.97 16 14 Si 0.92 17.07 29.60 -169.99 -5.03 12.03 16 15 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 16 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 17 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 18 C -0.21 -5.31 8.60 -39.22 -0.34 -5.65 16 19 C 0.14 3.38 7.13 -39.50 -0.28 3.10 16 20 F -0.16 -3.81 15.94 2.25 0.04 -3.77 16 21 C -0.21 -3.65 9.28 -39.03 -0.36 -4.02 16 22 C 0.16 2.49 6.77 -82.68 -0.56 1.93 16 23 C -0.10 -1.13 10.16 36.00 0.37 -0.76 16 24 N -0.56 -9.74 9.10 -9.65 -0.09 -9.83 16 25 H 0.05 0.67 8.10 -51.93 -0.42 0.25 16 26 H 0.05 0.66 8.10 -51.93 -0.42 0.24 16 27 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.14 2.78 7.86 -52.49 -0.41 2.36 16 29 H 0.10 1.84 8.05 -52.49 -0.42 1.42 16 30 H 0.10 2.10 8.06 -52.48 -0.42 1.68 16 31 H 0.29 6.29 8.29 -40.82 -0.34 5.95 16 32 H 0.13 3.41 6.16 -52.49 -0.32 3.09 16 33 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 319.01 15.07 4.81 4.81 Total: -1.00 -26.98 319.01 -7.47 -34.45 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -4.08 Total: 6.19 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -3.52 Total: -20.45 kcal Atomic # 7 Polarization: -28.32 SS G_CDS: 0.52 Total: -27.80 kcal Atomic # 8 Polarization: -5.27 SS G_CDS: -0.20 Total: -5.46 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.04 Total: -3.77 kcal Atomic # 14 Polarization: 17.07 SS G_CDS: -5.03 Total: 12.03 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -26.98 -7.47 -34.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242748795.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.279 kcal (2) G-P(sol) polarization free energy of solvation -26.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds