Wall clock time and date at job start Tue Mar 31 2020 05:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35679 * 117.00229 * 2 1 4 4 C 1.38666 * 119.61742 * 179.97438 * 3 2 1 5 5 C 1.39759 * 118.93766 * 179.97438 * 4 3 2 6 6 C 1.48003 * 120.89512 * 180.02562 * 5 4 3 7 7 C 1.39908 * 119.89274 * 129.72520 * 6 5 4 8 8 C 1.36256 * 120.14230 * 180.27197 * 7 6 5 9 9 C 1.40958 * 119.92915 * 0.02562 * 8 7 6 10 10 C 1.41059 * 120.10448 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99833 * 24.65848 * 10 9 8 12 12 C 1.40047 * 120.00124 * 204.66730 * 10 9 8 13 13 N 1.30768 * 119.99843 * 17.93867 * 12 10 9 14 14 Si 1.86800 * 119.99798 * 197.94388 * 12 10 9 15 15 H 1.48504 * 109.47404 * 89.99796 * 14 12 10 16 16 H 1.48503 * 109.46878 * 209.99359 * 14 12 10 17 17 H 1.48492 * 109.47152 * 329.99249 * 14 12 10 18 18 C 1.40833 * 119.78872 * 359.97438 * 9 8 7 19 19 C 1.36523 * 119.85777 * 0.02562 * 18 9 8 20 20 F 1.35103 * 119.96704 * 179.97438 * 19 18 9 21 21 C 1.40153 * 118.20964 * 0.27864 * 5 4 3 22 22 C 1.37774 * 119.11885 * 359.47329 * 21 5 4 23 23 C 1.50697 * 119.50971 * 180.25275 * 22 21 5 24 24 N 1.32034 * 120.98109 * 0.53860 * 22 21 5 25 25 H 1.08996 * 109.47427 * 300.00045 * 1 2 3 26 26 H 1.09003 * 109.46657 * 59.99928 * 1 2 3 27 27 H 1.09000 * 109.47598 * 179.97438 * 1 2 3 28 28 H 1.07991 * 120.53259 * 0.02562 * 4 3 2 29 29 H 1.08001 * 119.92686 * 0.27798 * 7 6 5 30 30 H 1.08005 * 120.03284 * 179.97438 * 8 7 6 31 31 H 0.97003 * 119.99751 * 180.02562 * 13 12 10 32 32 H 1.07999 * 120.06963 * 180.02562 * 18 9 8 33 33 H 1.07995 * 120.44058 * 179.70373 * 21 5 4 34 34 H 1.08997 * 109.46990 * 270.27833 * 23 22 21 35 35 H 1.08992 * 109.46977 * 30.28431 * 23 22 21 36 36 H 1.08999 * 109.47140 * 150.28252 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4302 1.2722 0.0005 5 6 4.0500 2.5248 0.0000 6 6 5.5253 2.6428 0.0000 7 6 6.1585 3.4707 -0.9333 8 6 7.5168 3.5788 -0.9415 9 6 8.2856 2.8546 -0.0080 10 6 9.6919 2.9642 -0.0128 11 1 10.1633 3.8479 -0.4168 12 6 10.4769 1.9270 0.5062 13 7 9.9622 0.7358 0.6683 14 14 12.2590 2.2452 0.9669 15 1 12.3339 2.6776 2.3857 16 1 13.0468 0.9993 0.7870 17 1 12.8130 3.3115 0.0945 18 6 7.6451 2.0221 0.9301 19 6 6.2836 1.9202 0.9305 20 9 5.6669 1.1219 1.8292 21 6 3.2367 3.6663 0.0049 22 6 1.8675 3.5140 -0.0010 23 6 0.9847 4.7354 -0.0016 24 7 1.3171 2.3138 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 4.0207 0.3680 0.0005 29 1 5.5695 4.0254 -1.6487 30 1 8.0038 4.2182 -1.6630 31 1 10.5059 0.0175 1.0281 32 1 8.2296 1.4655 1.6476 33 1 3.6776 4.6522 0.0095 34 1 0.7718 5.0302 1.0260 35 1 1.4932 5.5508 -0.5157 36 1 0.0506 4.5083 -0.5153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242748795.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:33 Heat of formation + Delta-G solvation = -58.109527 kcal Electronic energy + Delta-G solvation = -21583.639419 eV Core-core repulsion = 18139.126292 eV Total energy + Delta-G solvation = -3444.513127 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.106 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.65273 -41.57681 -39.54789 -38.77672 -35.98745 -34.22413 -32.86881 -31.09213 -31.03037 -29.17167 -27.57451 -27.29564 -24.17880 -23.52909 -22.91545 -21.65869 -19.60306 -19.02574 -17.93060 -17.61086 -17.03148 -16.91229 -16.64928 -16.50298 -16.31366 -16.06924 -15.17599 -14.93485 -14.89095 -14.52059 -14.30744 -13.93825 -13.54884 -13.35433 -13.24511 -13.11146 -12.94517 -12.79059 -12.67974 -12.42372 -12.16132 -12.04643 -11.85609 -11.63138 -11.21997 -10.66175 -10.62466 -9.48891 -9.39834 -9.27572 -8.79880 -6.51208 -0.00179 0.22940 0.84184 0.94641 1.38705 1.49773 1.53560 2.12803 2.14942 2.52457 2.80322 3.26495 3.50459 3.71685 3.75638 4.13059 4.17869 4.29142 4.40651 4.43202 4.45502 4.59751 4.68992 4.75240 4.80021 4.84673 4.95388 4.97868 5.04054 5.14100 5.19015 5.40685 5.48768 5.59464 5.72341 5.84530 5.92328 6.16274 6.27930 6.48005 6.72582 6.79026 6.88912 8.14198 Molecular weight = 287.11amu Principal moments of inertia in cm(-1) A = 0.029030 B = 0.003897 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.293188 B = 7183.243481 C = 7841.821779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.326 6.326 3 C 0.316 3.684 4 C -0.219 4.219 5 C 0.070 3.930 6 C -0.245 4.245 7 C -0.030 4.030 8 C -0.239 4.239 9 C 0.111 3.889 10 C -0.469 4.469 11 H 0.098 0.902 12 C 0.033 3.967 13 N -0.808 5.808 14 Si 0.990 3.010 15 H -0.262 1.262 16 H -0.269 1.269 17 H -0.248 1.248 18 C -0.235 4.235 19 C 0.122 3.878 20 F -0.165 7.165 21 C -0.210 4.210 22 C 0.160 3.840 23 C -0.095 4.095 24 N -0.557 5.557 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.122 0.878 28 H 0.115 0.885 29 H 0.136 0.864 30 H 0.122 0.878 31 H 0.295 0.705 32 H 0.110 0.890 33 H 0.154 0.846 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.984 4.708 -1.377 12.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.234 6.234 3 C 0.138 3.862 4 C -0.240 4.240 5 C 0.063 3.937 6 C -0.247 4.247 7 C -0.048 4.048 8 C -0.258 4.258 9 C 0.107 3.893 10 C -0.496 4.496 11 H 0.116 0.884 12 C -0.185 4.185 13 N -0.431 5.431 14 Si 0.809 3.191 15 H -0.187 1.187 16 H -0.193 1.193 17 H -0.172 1.172 18 C -0.255 4.255 19 C 0.103 3.897 20 F -0.144 7.144 21 C -0.230 4.230 22 C 0.025 3.975 23 C -0.152 4.152 24 N -0.283 5.283 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.140 0.860 28 H 0.133 0.867 29 H 0.154 0.846 30 H 0.140 0.860 31 H 0.106 0.894 32 H 0.128 0.872 33 H 0.172 0.828 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.770 4.062 -1.288 12.518 hybrid contribution 1.528 -0.706 0.557 1.773 sum -10.243 3.355 -0.731 10.803 Atomic orbital electron populations 1.23053 0.75684 1.04530 1.02349 1.86227 1.24664 1.24476 1.88048 1.19616 0.88762 0.85175 0.92606 1.21130 0.92314 0.98864 1.11690 1.18920 0.92410 0.92172 0.90184 1.18089 0.90414 1.10595 1.05649 1.20470 0.94178 0.94705 0.95481 1.20985 0.93697 1.08468 1.02679 1.17801 0.94249 0.88872 0.88328 1.20089 0.91326 1.03763 1.34469 0.88446 1.27021 1.06319 0.93388 0.91820 1.69855 1.40917 1.02219 1.30129 0.85071 0.74826 0.79385 0.79777 1.18709 1.19331 1.17157 1.20887 0.91111 1.08876 1.04631 1.17595 0.90900 0.91861 0.89363 1.91335 1.83822 1.72393 1.66887 1.22123 0.93641 0.99350 1.07899 1.21445 0.92174 0.92520 0.91390 1.20803 0.98556 0.91556 1.04252 1.67119 1.40596 0.98460 1.22143 0.92473 0.92211 0.86036 0.86660 0.84604 0.85971 0.89434 0.87214 0.82784 0.89097 0.88332 0.89941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.88 10.38 113.37 1.18 2.05 16 2 O -0.33 -10.84 10.47 -89.97 -0.94 -11.79 16 3 C 0.32 11.58 7.48 84.72 0.63 12.21 16 4 C -0.22 -8.93 8.91 22.74 0.20 -8.73 16 5 C 0.07 2.81 5.32 -19.85 -0.11 2.71 16 6 C -0.25 -10.95 5.54 -19.83 -0.11 -11.06 16 7 C -0.03 -1.24 9.48 22.21 0.21 -1.03 16 8 C -0.24 -10.67 9.73 22.47 0.22 -10.45 16 9 C 0.11 5.64 5.57 -21.29 -0.12 5.53 16 10 C -0.47 -23.19 9.03 23.40 0.21 -22.98 16 11 H 0.10 4.45 7.91 -2.91 -0.02 4.43 16 12 C 0.03 1.54 5.13 85.29 0.44 1.98 16 13 N -0.81 -40.61 10.96 21.84 0.24 -40.37 16 14 Si 0.99 35.15 29.60 68.60 2.03 37.18 16 15 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 16 H -0.27 -9.19 7.11 99.48 0.71 -8.48 16 17 H -0.25 -8.34 7.11 99.48 0.71 -7.63 16 18 C -0.23 -12.47 8.60 22.50 0.19 -12.27 16 19 C 0.12 6.13 7.13 22.32 0.16 6.29 16 20 F -0.17 -8.28 15.94 44.97 0.72 -7.57 16 21 C -0.21 -6.82 9.28 22.63 0.21 -6.61 16 22 C 0.16 4.68 6.77 42.42 0.29 4.96 16 23 C -0.09 -1.76 10.16 71.23 0.72 -1.03 16 24 N -0.56 -18.22 9.10 -297.27 -2.71 -20.93 16 25 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 26 H 0.06 1.31 8.10 -2.39 -0.02 1.29 16 27 H 0.12 1.97 8.14 -2.39 -0.02 1.96 16 28 H 0.12 5.02 7.86 -2.92 -0.02 5.00 16 29 H 0.14 4.57 8.05 -2.91 -0.02 4.55 16 30 H 0.12 4.86 8.06 -2.91 -0.02 4.84 16 31 H 0.29 13.36 8.29 -92.71 -0.77 12.59 16 32 H 0.11 6.16 6.16 -2.91 -0.02 6.14 16 33 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 34 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.10 1.41 8.07 -2.39 -0.02 1.39 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -60.74 319.01 4.77 -55.97 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 1.10 Total: 25.95 kcal Atomic # 6 Polarization: -42.77 SS G_CDS: 4.33 Total: -38.44 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: -2.47 Total: -61.30 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -0.94 Total: -11.79 kcal Atomic # 9 Polarization: -8.28 SS G_CDS: 0.72 Total: -7.57 kcal Atomic # 14 Polarization: 35.15 SS G_CDS: 2.03 Total: 37.18 kcal Total: -60.74 4.77 -55.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242748795.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.137 kcal (2) G-P(sol) polarization free energy of solvation -60.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds