Wall clock time and date at job start Tue Mar 31 2020 05:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35875 * 117.00240 * 2 1 4 4 C 1.39477 * 119.77801 * 0.02562 * 3 2 1 5 5 C 1.37928 * 120.62396 * 180.02562 * 4 3 2 6 6 C 1.39196 * 120.16389 * 359.97438 * 5 4 3 7 7 C 1.47787 * 120.22659 * 180.02562 * 6 5 4 8 8 C 1.40000 * 120.57686 * 89.99912 * 7 6 5 9 9 C 1.50701 * 120.84348 * 359.96091 * 8 7 6 10 10 C 1.38372 * 118.31311 * 180.23251 * 8 7 6 11 11 C 1.38332 * 119.38066 * 359.50542 * 10 8 7 12 12 N 1.31977 * 121.13626 * 0.50536 * 11 10 8 13 13 C 1.31882 * 121.84240 * 359.75205 * 12 11 10 14 14 F 1.35103 * 119.75421 * 180.02562 * 13 12 11 15 15 C 1.41918 * 119.55415 * 0.27710 * 6 5 4 16 16 C 1.40876 * 120.30465 * 179.72448 * 15 6 5 17 17 H 1.08004 * 119.99807 * 329.79446 * 16 15 6 18 18 C 1.40043 * 120.00250 * 149.79899 * 16 15 6 19 19 N 1.30785 * 120.00164 * 161.92311 * 18 16 15 20 20 Si 1.86804 * 119.99640 * 341.92254 * 18 16 15 21 21 H 1.48499 * 109.46964 * 95.40582 * 20 18 16 22 22 H 1.48500 * 109.46903 * 215.40192 * 20 18 16 23 23 H 1.48501 * 109.46997 * 335.40446 * 20 18 16 24 24 C 1.37914 * 119.77838 * 180.02562 * 3 2 1 25 25 H 1.09003 * 109.47186 * 300.00296 * 1 2 3 26 26 H 1.09005 * 109.46871 * 59.99978 * 1 2 3 27 27 H 1.08997 * 109.47534 * 179.97438 * 1 2 3 28 28 H 1.08003 * 119.68757 * 0.02562 * 4 3 2 29 29 H 1.08001 * 119.91439 * 179.97438 * 5 4 3 30 30 H 1.08997 * 109.47298 * 89.99988 * 9 8 7 31 31 H 1.09000 * 109.47118 * 329.99301 * 9 8 7 32 32 H 1.09010 * 109.46971 * 209.99882 * 9 8 7 33 33 H 1.08000 * 120.30646 * 179.75346 * 10 8 7 34 34 H 1.07997 * 119.43514 * 180.25376 * 11 10 8 35 35 H 0.96999 * 119.99621 * 180.02562 * 19 18 16 36 36 H 1.08003 * 120.09010 * 0.02708 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0458 1.2106 0.0000 4 6 1.2817 2.3775 0.0005 5 6 1.8897 3.6155 0.0000 6 6 3.2783 3.7128 -0.0005 7 6 3.9312 5.0386 -0.0005 8 6 4.2463 5.6772 1.2048 9 6 3.9275 5.0306 2.5282 10 6 4.8527 6.9198 1.1502 11 6 5.1359 7.4832 -0.0810 12 7 4.8287 6.8605 -1.2034 13 6 4.2457 5.6776 -1.2056 14 9 3.9504 5.0778 -2.3797 15 6 4.0628 2.5302 -0.0065 16 6 5.4693 2.6102 -0.0130 17 1 5.9603 3.4489 -0.4843 18 6 6.2309 1.6024 0.5916 19 7 7.4983 1.4739 0.2957 20 14 5.4363 0.4416 1.8207 21 1 5.0106 -0.7997 1.1254 22 1 6.4148 0.1021 2.8849 23 1 4.2519 1.0995 2.4287 24 6 3.4234 1.2774 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.2037 2.3109 0.0014 29 1 1.2869 4.5116 0.0000 30 1 4.7723 4.4202 2.8472 31 1 3.0440 4.4012 2.4216 32 1 3.7356 5.8030 3.2731 33 1 5.1062 7.4430 2.0603 34 1 5.6129 8.4512 -0.1247 35 1 8.0256 0.7756 0.7141 36 1 4.0095 0.3703 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243553093.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:10 Heat of formation + Delta-G solvation = -33.043228 kcal Electronic energy + Delta-G solvation = -22671.255739 eV Core-core repulsion = 19227.829568 eV Total energy + Delta-G solvation = -3443.426171 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.106 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.23063 -39.70176 -38.92990 -36.70307 -33.76711 -33.43155 -31.13003 -30.61070 -28.68949 -27.56018 -26.43646 -25.15109 -23.07249 -21.72149 -21.46437 -20.03027 -17.87941 -16.89096 -16.81957 -16.61366 -15.82943 -15.55536 -15.11398 -15.05958 -14.76814 -14.35821 -13.53048 -13.31746 -13.14298 -13.10002 -12.70757 -12.53636 -12.25749 -12.13990 -12.08931 -11.91510 -11.63240 -11.27173 -11.03638 -10.92895 -10.67790 -10.20265 -10.10685 -9.75968 -9.32282 -9.15163 -8.93309 -8.19926 -7.82535 -7.19806 -7.08518 -4.66981 1.46437 1.64309 2.42139 2.52731 3.09529 3.14463 3.25468 3.90122 4.00568 4.05342 4.17771 4.33980 5.03044 5.09630 5.17753 5.40069 5.46753 5.49404 5.54140 5.72598 5.79609 5.81202 6.01827 6.06784 6.10262 6.22926 6.28798 6.46194 6.54004 6.57487 6.80590 6.92261 7.03814 7.12294 7.39317 7.46120 7.52632 7.78792 8.10690 8.14792 8.32236 8.51543 8.63798 9.91624 Molecular weight = 287.11amu Principal moments of inertia in cm(-1) A = 0.013736 B = 0.007940 C = 0.006197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.960614 B = 3525.532241 C = 4516.980199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.330 6.330 3 C 0.165 3.835 4 C -0.322 4.322 5 C -0.022 4.022 6 C -0.196 4.196 7 C -0.045 4.045 8 C -0.008 4.008 9 C -0.111 4.111 10 C -0.191 4.191 11 C 0.115 3.885 12 N -0.525 5.525 13 C 0.306 3.694 14 F -0.110 7.110 15 C 0.141 3.859 16 C -0.429 4.429 17 H 0.091 0.909 18 C 0.087 3.913 19 N -0.792 5.792 20 Si 0.910 3.090 21 H -0.266 1.266 22 H -0.290 1.290 23 H -0.242 1.242 24 C -0.265 4.265 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.086 0.914 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.134 0.866 34 H 0.157 0.843 35 H 0.288 0.712 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.253 4.436 4.872 9.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.244 6.244 3 C 0.120 3.880 4 C -0.341 4.341 5 C -0.041 4.041 6 C -0.198 4.198 7 C -0.048 4.048 8 C -0.015 4.015 9 C -0.167 4.167 10 C -0.211 4.211 11 C -0.042 4.042 12 N -0.240 5.240 13 C 0.153 3.847 14 F -0.089 7.089 15 C 0.138 3.862 16 C -0.457 4.457 17 H 0.109 0.891 18 C -0.135 4.135 19 N -0.415 5.415 20 Si 0.736 3.264 21 H -0.192 1.192 22 H -0.217 1.217 23 H -0.165 1.165 24 C -0.285 4.285 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.104 0.896 28 H 0.122 0.878 29 H 0.115 0.885 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.152 0.848 34 H 0.174 0.826 35 H 0.099 0.901 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.696 4.519 4.026 9.026 hybrid contribution -0.516 -0.902 0.848 1.341 sum -7.212 3.617 4.874 9.426 Atomic orbital electron populations 1.22837 0.80033 1.02323 1.00915 1.86005 1.20196 1.28891 1.89304 1.18840 0.91924 0.82844 0.94363 1.20314 0.97668 0.92042 1.24121 1.20338 0.92884 0.95583 0.95267 1.18086 0.91962 0.89861 1.19929 1.19261 0.99576 0.95267 0.90713 1.20381 0.93153 0.92705 0.95304 1.20765 1.03585 1.00352 0.92044 1.21886 1.03143 0.96759 0.99290 1.22260 0.96707 0.98807 0.86408 1.66837 1.14648 1.09213 1.33337 1.18492 0.95967 0.88873 0.81366 1.91589 1.90231 1.81420 1.45659 1.17246 0.92930 0.88855 0.87217 1.19376 0.89438 1.06597 1.30256 0.89069 1.26245 0.94647 0.96194 0.96375 1.69680 1.08349 1.28866 1.34576 0.86313 0.79725 0.80582 0.79768 1.19166 1.21735 1.16467 1.20216 0.90555 0.97711 1.20015 0.93321 0.93234 0.89556 0.87843 0.88468 0.90030 0.90310 0.91902 0.84792 0.82599 0.90103 0.87146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.80 101.05 0.99 1.48 16 2 O -0.33 -6.63 10.48 -19.35 -0.20 -6.83 16 3 C 0.16 3.65 6.67 -39.24 -0.26 3.39 16 4 C -0.32 -6.50 9.02 -39.23 -0.35 -6.86 16 5 C -0.02 -0.46 9.55 -39.34 -0.38 -0.83 16 6 C -0.20 -4.39 3.71 -104.23 -0.39 -4.77 16 7 C -0.04 -0.93 4.11 -104.68 -0.43 -1.36 16 8 C -0.01 -0.14 5.95 -103.91 -0.62 -0.76 16 9 C -0.11 -1.75 9.69 36.01 0.35 -1.40 16 10 C -0.19 -2.87 9.80 -39.50 -0.39 -3.25 16 11 C 0.11 1.80 11.17 -17.45 -0.19 1.61 16 12 N -0.53 -10.31 10.36 -13.20 -0.14 -10.44 16 13 C 0.31 6.58 8.42 -16.88 -0.14 6.44 16 14 F -0.11 -2.51 16.86 2.25 0.04 -2.47 16 15 C 0.14 3.48 5.12 -106.58 -0.55 2.94 16 16 C -0.43 -11.28 8.94 -37.91 -0.34 -11.62 16 17 H 0.09 2.60 7.55 -52.48 -0.40 2.21 16 18 C 0.09 2.21 5.41 -17.32 -0.09 2.12 16 19 N -0.79 -20.58 13.93 55.55 0.77 -19.80 16 20 Si 0.91 20.42 24.52 -169.99 -4.17 16.25 16 21 H -0.27 -5.99 6.71 56.52 0.38 -5.61 16 22 H -0.29 -6.21 7.11 56.52 0.40 -5.80 16 23 H -0.24 -5.46 6.86 56.52 0.39 -5.08 16 24 C -0.27 -6.46 7.08 -38.79 -0.27 -6.74 16 25 H 0.05 0.64 7.64 -51.93 -0.40 0.25 16 26 H 0.05 0.66 7.65 -51.93 -0.40 0.27 16 27 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.10 1.79 6.25 -52.48 -0.33 1.47 16 29 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.08 1.32 7.02 -51.93 -0.36 0.96 16 32 H 0.06 0.77 8.10 -51.92 -0.42 0.34 16 33 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 34 H 0.16 1.82 8.06 -52.49 -0.42 1.39 16 35 H 0.29 6.76 8.29 -40.82 -0.34 6.42 16 36 H 0.11 2.75 4.74 -52.48 -0.25 2.50 16 LS Contribution 308.97 15.07 4.66 4.66 Total: -1.00 -29.10 308.97 -5.94 -35.04 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -3.84 Total: 3.22 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -3.07 Total: -19.63 kcal Atomic # 7 Polarization: -30.88 SS G_CDS: 0.64 Total: -30.25 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.20 Total: -6.83 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.17 Total: 16.25 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.10 -5.94 -35.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243553093.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.998 kcal (2) G-P(sol) polarization free energy of solvation -29.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds