Wall clock time and date at job start Tue Mar 31 2020 05:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35875 * 117.00240 * 2 1 4 4 C 1.39477 * 119.77801 * 0.02562 * 3 2 1 5 5 C 1.37928 * 120.62396 * 180.02562 * 4 3 2 6 6 C 1.39196 * 120.16389 * 359.97438 * 5 4 3 7 7 C 1.47787 * 120.22659 * 180.02562 * 6 5 4 8 8 C 1.40000 * 120.57686 * 89.99912 * 7 6 5 9 9 C 1.50701 * 120.84348 * 359.96091 * 8 7 6 10 10 C 1.38372 * 118.31311 * 180.23251 * 8 7 6 11 11 C 1.38332 * 119.38066 * 359.50542 * 10 8 7 12 12 N 1.31977 * 121.13626 * 0.50536 * 11 10 8 13 13 C 1.31882 * 121.84240 * 359.75205 * 12 11 10 14 14 F 1.35103 * 119.75421 * 180.02562 * 13 12 11 15 15 C 1.41918 * 119.55415 * 0.27710 * 6 5 4 16 16 C 1.40876 * 120.30465 * 179.72448 * 15 6 5 17 17 H 1.08004 * 119.99807 * 329.79446 * 16 15 6 18 18 C 1.40043 * 120.00250 * 149.79899 * 16 15 6 19 19 N 1.30785 * 120.00164 * 161.92311 * 18 16 15 20 20 Si 1.86804 * 119.99640 * 341.92254 * 18 16 15 21 21 H 1.48499 * 109.46964 * 95.40582 * 20 18 16 22 22 H 1.48500 * 109.46903 * 215.40192 * 20 18 16 23 23 H 1.48501 * 109.46997 * 335.40446 * 20 18 16 24 24 C 1.37914 * 119.77838 * 180.02562 * 3 2 1 25 25 H 1.09003 * 109.47186 * 300.00296 * 1 2 3 26 26 H 1.09005 * 109.46871 * 59.99978 * 1 2 3 27 27 H 1.08997 * 109.47534 * 179.97438 * 1 2 3 28 28 H 1.08003 * 119.68757 * 0.02562 * 4 3 2 29 29 H 1.08001 * 119.91439 * 179.97438 * 5 4 3 30 30 H 1.08997 * 109.47298 * 89.99988 * 9 8 7 31 31 H 1.09000 * 109.47118 * 329.99301 * 9 8 7 32 32 H 1.09010 * 109.46971 * 209.99882 * 9 8 7 33 33 H 1.08000 * 120.30646 * 179.75346 * 10 8 7 34 34 H 1.07997 * 119.43514 * 180.25376 * 11 10 8 35 35 H 0.96999 * 119.99621 * 180.02562 * 19 18 16 36 36 H 1.08003 * 120.09010 * 0.02708 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0458 1.2106 0.0000 4 6 1.2817 2.3775 0.0005 5 6 1.8897 3.6155 0.0000 6 6 3.2783 3.7128 -0.0005 7 6 3.9312 5.0386 -0.0005 8 6 4.2463 5.6772 1.2048 9 6 3.9275 5.0306 2.5282 10 6 4.8527 6.9198 1.1502 11 6 5.1359 7.4832 -0.0810 12 7 4.8287 6.8605 -1.2034 13 6 4.2457 5.6776 -1.2056 14 9 3.9504 5.0778 -2.3797 15 6 4.0628 2.5302 -0.0065 16 6 5.4693 2.6102 -0.0130 17 1 5.9603 3.4489 -0.4843 18 6 6.2309 1.6024 0.5916 19 7 7.4983 1.4739 0.2957 20 14 5.4363 0.4416 1.8207 21 1 5.0106 -0.7997 1.1254 22 1 6.4148 0.1021 2.8849 23 1 4.2519 1.0995 2.4287 24 6 3.4234 1.2774 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.2037 2.3109 0.0014 29 1 1.2869 4.5116 0.0000 30 1 4.7723 4.4202 2.8472 31 1 3.0440 4.4012 2.4216 32 1 3.7356 5.8030 3.2731 33 1 5.1062 7.4430 2.0603 34 1 5.6129 8.4512 -0.1247 35 1 8.0256 0.7756 0.7141 36 1 4.0095 0.3703 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243553093.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:10 Heat of formation + Delta-G solvation = -50.968314 kcal Electronic energy + Delta-G solvation = -22672.033029 eV Core-core repulsion = 19227.829568 eV Total energy + Delta-G solvation = -3444.203461 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.106 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.87774 -41.17377 -40.46364 -38.32516 -35.55060 -34.89246 -32.59931 -32.40077 -30.16308 -28.88879 -27.81870 -26.88491 -24.55303 -23.33388 -23.00003 -21.64138 -19.64196 -18.45943 -18.38545 -18.16942 -17.33620 -17.16752 -16.71691 -16.52777 -16.42074 -15.72230 -15.18265 -14.92078 -14.69921 -14.57132 -14.18686 -14.08839 -13.95644 -13.49325 -13.47315 -13.45651 -13.01148 -12.76997 -12.72192 -12.50812 -12.20161 -11.95481 -11.73124 -11.48049 -11.10238 -10.60641 -10.30366 -9.67011 -9.61495 -8.98482 -8.86591 -6.59684 0.06197 0.25894 0.67887 0.75766 1.26189 1.35245 1.45041 2.08483 2.49173 2.59286 2.65239 2.79319 3.35247 3.69086 3.91675 3.95045 4.12845 4.26202 4.39737 4.46126 4.46210 4.62964 4.65973 4.71596 4.75343 4.82047 4.85656 4.92220 4.95607 5.18313 5.22788 5.25708 5.46632 5.60593 5.69880 5.77692 5.87154 6.03049 6.17134 6.56945 6.73163 6.76140 6.80525 8.09379 Molecular weight = 287.11amu Principal moments of inertia in cm(-1) A = 0.013736 B = 0.007940 C = 0.006197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.960614 B = 3525.532241 C = 4516.980199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.348 6.348 3 C 0.160 3.840 4 C -0.302 4.302 5 C -0.027 4.027 6 C -0.194 4.194 7 C -0.071 4.071 8 C -0.018 4.018 9 C -0.108 4.108 10 C -0.172 4.172 11 C 0.116 3.884 12 N -0.546 5.546 13 C 0.270 3.730 14 F -0.132 7.132 15 C 0.127 3.873 16 C -0.457 4.457 17 H 0.051 0.949 18 C 0.057 3.943 19 N -0.836 5.836 20 Si 0.961 3.039 21 H -0.272 1.272 22 H -0.272 1.272 23 H -0.246 1.246 24 C -0.290 4.290 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.118 0.882 28 H 0.141 0.859 29 H 0.126 0.874 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.184 0.816 34 H 0.203 0.797 35 H 0.296 0.704 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.583 5.764 6.955 13.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.263 6.263 3 C 0.115 3.885 4 C -0.322 4.322 5 C -0.045 4.045 6 C -0.196 4.196 7 C -0.075 4.075 8 C -0.026 4.026 9 C -0.164 4.164 10 C -0.191 4.191 11 C -0.040 4.040 12 N -0.261 5.261 13 C 0.119 3.881 14 F -0.112 7.112 15 C 0.125 3.875 16 C -0.486 4.486 17 H 0.070 0.930 18 C -0.160 4.160 19 N -0.461 5.461 20 Si 0.785 3.215 21 H -0.198 1.198 22 H -0.198 1.198 23 H -0.169 1.169 24 C -0.310 4.310 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.136 0.864 28 H 0.159 0.841 29 H 0.144 0.856 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.125 0.875 33 H 0.201 0.799 34 H 0.220 0.780 35 H 0.107 0.893 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.043 5.840 6.106 12.376 hybrid contribution -0.024 -1.189 0.180 1.203 sum -9.067 4.651 6.286 11.973 Atomic orbital electron populations 1.23267 0.76788 1.05028 1.02131 1.85985 1.23497 1.27855 1.88916 1.18914 0.91474 0.84411 0.93726 1.20762 0.99500 0.91059 1.20831 1.20720 0.92452 0.96986 0.94360 1.18364 0.92881 0.90062 1.18255 1.19365 1.01228 0.95077 0.91809 1.20768 0.93090 0.93802 0.94935 1.20796 1.02316 1.01234 0.92059 1.22402 1.00346 0.95361 1.00977 1.23163 0.95208 0.99936 0.85707 1.66880 1.15014 1.08776 1.35457 1.18719 0.98234 0.90188 0.81007 1.91511 1.90751 1.82049 1.46866 1.17378 0.92561 0.90106 0.87501 1.19160 0.90425 1.06334 1.32632 0.93039 1.26792 0.94882 0.97092 0.97250 1.69707 1.09410 1.30511 1.36463 0.85542 0.79049 0.78599 0.78326 1.19781 1.19841 1.16928 1.20260 0.92027 0.97060 1.21657 0.91786 0.92111 0.86409 0.84092 0.85635 0.91301 0.91738 0.87532 0.79865 0.78024 0.89335 0.88602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 9.80 113.37 1.11 1.66 16 2 O -0.35 -13.34 10.48 -92.15 -0.97 -14.30 16 3 C 0.16 6.91 6.67 22.49 0.15 7.06 16 4 C -0.30 -11.44 9.02 22.49 0.20 -11.24 16 5 C -0.03 -1.06 9.55 22.43 0.21 -0.85 16 6 C -0.19 -8.75 3.71 -19.61 -0.07 -8.82 16 7 C -0.07 -3.00 4.11 -19.90 -0.08 -3.08 16 8 C -0.02 -0.62 5.95 -19.40 -0.12 -0.74 16 9 C -0.11 -3.17 9.69 71.24 0.69 -2.48 16 10 C -0.17 -4.56 9.80 22.32 0.22 -4.34 16 11 C 0.12 3.34 11.17 84.69 0.95 4.28 16 12 N -0.55 -21.27 10.36 -195.66 -2.03 -23.30 16 13 C 0.27 11.95 8.42 85.11 0.72 12.66 16 14 F -0.13 -6.38 16.86 44.97 0.76 -5.63 16 15 C 0.13 6.53 5.12 -21.13 -0.11 6.42 16 16 C -0.46 -25.52 8.94 23.35 0.21 -25.31 16 17 H 0.05 3.19 7.55 -2.91 -0.02 3.17 16 18 C 0.06 3.03 5.41 85.29 0.46 3.49 16 19 N -0.84 -45.75 13.93 21.84 0.30 -45.45 16 20 Si 0.96 43.43 24.52 68.60 1.68 45.11 16 21 H -0.27 -12.35 6.71 99.48 0.67 -11.69 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 23 H -0.25 -11.10 6.86 99.48 0.68 -10.42 16 24 C -0.29 -14.42 7.08 22.78 0.16 -14.26 16 25 H 0.06 1.42 7.64 -2.39 -0.02 1.40 16 26 H 0.06 1.39 7.65 -2.38 -0.02 1.37 16 27 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.14 4.24 6.25 -2.91 -0.02 4.22 16 29 H 0.13 4.21 8.06 -2.91 -0.02 4.18 16 30 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.06 2.06 7.02 -2.39 -0.02 2.05 16 32 H 0.11 2.14 8.10 -2.38 -0.02 2.12 16 33 H 0.18 3.05 8.06 -2.91 -0.02 3.02 16 34 H 0.20 3.79 8.06 -2.91 -0.02 3.76 16 35 H 0.30 14.52 8.29 -92.71 -0.77 13.76 16 36 H 0.10 4.95 4.74 -2.91 -0.01 4.94 16 Total: -1.00 -68.91 308.97 5.51 -63.41 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 1.05 Total: 15.69 kcal Atomic # 6 Polarization: -40.24 SS G_CDS: 4.70 Total: -35.54 kcal Atomic # 7 Polarization: -67.02 SS G_CDS: -1.72 Total: -68.75 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.97 Total: -14.30 kcal Atomic # 9 Polarization: -6.38 SS G_CDS: 0.76 Total: -5.63 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.68 Total: 45.11 kcal Total: -68.91 5.51 -63.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243553093.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.440 kcal (2) G-P(sol) polarization free energy of solvation -68.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds