Wall clock time and date at job start Tue Mar 31 2020 06:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30278 * 126.28404 * 2 1 4 4 N 1.28663 * 109.38288 * 180.02562 * 3 2 1 5 5 C 1.30272 * 109.38144 * 359.97438 * 4 3 2 6 6 C 1.50699 * 126.27881 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.47253 * 90.03106 * 6 5 4 8 8 C 1.34783 * 119.99819 * 179.97438 * 7 6 5 9 9 O 1.21586 * 120.00186 * 359.97438 * 8 7 6 10 10 C 1.47642 * 119.99765 * 179.71985 * 8 7 6 11 11 C 1.40015 * 119.89395 * 0.02562 * 10 8 7 12 12 C 1.36321 * 120.10544 * 179.71765 * 11 10 8 13 13 C 1.40895 * 119.88932 * 0.55022 * 12 11 10 14 14 C 1.41108 * 120.10152 * 179.69677 * 13 12 11 15 15 H 1.07992 * 119.99872 * 204.66399 * 14 13 12 16 16 C 1.40225 * 120.00051 * 24.66454 * 14 13 12 17 17 N 1.30654 * 119.99982 * 17.86632 * 16 14 13 18 18 Si 1.86795 * 120.00136 * 197.86918 * 16 14 13 19 19 H 1.48493 * 109.47526 * 59.99350 * 18 16 14 20 20 H 1.48496 * 109.47534 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46856 * 299.99762 * 18 16 14 22 22 C 1.40889 * 119.79304 * 359.72558 * 13 12 11 23 23 C 1.36323 * 119.89189 * 359.97438 * 22 13 12 24 24 O 1.34355 * 107.43668 * 0.24693 * 5 4 3 25 25 H 1.09004 * 109.46693 * 89.98359 * 1 2 3 26 26 H 1.09003 * 109.47040 * 209.97422 * 1 2 3 27 27 H 1.08994 * 109.47476 * 329.98119 * 1 2 3 28 28 H 1.08996 * 109.47570 * 330.02165 * 6 5 4 29 29 H 1.09008 * 109.46759 * 210.02997 * 6 5 4 30 30 H 0.96998 * 119.99837 * 359.97438 * 7 6 5 31 31 H 1.07996 * 119.94843 * 359.97438 * 11 10 8 32 32 H 1.07994 * 120.05729 * 180.27717 * 12 11 10 33 33 H 0.97000 * 119.99535 * 180.02562 * 17 16 14 34 34 H 1.07996 * 120.04925 * 179.97438 * 22 13 12 35 35 H 1.07994 * 119.94393 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6761 -0.0005 5 6 3.5654 -0.6254 -0.0004 6 6 4.8177 -1.4637 -0.0014 7 7 5.2244 -1.7357 1.3795 8 6 6.3254 -2.4734 1.6248 9 8 6.9809 -2.9134 0.7001 10 6 6.7388 -2.7423 3.0164 11 6 5.9850 -2.2305 4.0796 12 6 6.3595 -2.4810 5.3662 13 6 7.5136 -3.2466 5.6251 14 6 7.9089 -3.5032 6.9552 15 1 8.9428 -3.7206 7.1788 16 6 6.9592 -3.4760 7.9865 17 7 5.6864 -3.5636 7.7050 18 14 7.5139 -3.3145 9.7629 19 1 8.2652 -2.0451 9.9335 20 1 6.3261 -3.3109 10.6541 21 1 8.3915 -4.4600 10.1135 22 6 8.2720 -3.7546 4.5520 23 6 7.8862 -3.5039 3.2687 24 8 2.3022 -1.0831 -0.0052 25 1 -0.3633 0.0003 -1.0277 26 1 -0.3633 -0.8902 0.5134 27 1 -0.3634 0.8897 0.5141 28 1 5.6143 -0.9262 -0.5157 29 1 4.6241 -2.4053 -0.5154 30 1 4.7012 -1.3850 2.1172 31 1 5.1033 -1.6397 3.8800 32 1 5.7751 -2.0895 6.1856 33 1 5.0295 -3.5444 8.4185 34 1 9.1576 -4.3416 4.7457 35 1 8.4671 -3.8926 2.4455 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324483948.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:34 Heat of formation + Delta-G solvation = 16.002856 kcal Electronic energy + Delta-G solvation = -21016.306227 eV Core-core repulsion = 17594.926815 eV Total energy + Delta-G solvation = -3421.379411 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.106 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.45366 -39.24081 -37.23210 -36.38610 -34.98353 -33.93594 -32.92605 -30.60519 -29.52316 -29.22462 -26.92128 -25.52590 -23.03712 -22.63735 -21.86575 -20.97167 -19.86208 -17.75472 -17.64189 -17.55197 -16.83343 -15.74805 -15.40901 -15.30413 -14.59324 -14.50621 -14.03665 -13.80484 -13.54621 -13.27769 -13.07710 -12.81141 -12.77079 -12.60671 -12.15542 -12.05290 -11.98268 -11.42366 -11.30415 -11.19377 -11.03447 -10.70351 -10.14741 -9.89291 -9.61363 -9.40090 -9.10774 -8.91559 -7.78341 -7.61246 -7.09233 -4.66178 0.83261 1.97162 2.11268 2.14375 2.88811 2.91568 2.95479 2.98726 3.45929 3.69223 3.72581 3.75784 4.12374 4.48251 4.60653 4.87905 4.98043 5.03205 5.20856 5.39175 5.45068 5.49549 5.52589 5.90881 5.98228 6.25926 6.57450 6.72078 6.77082 6.96725 7.06788 7.37120 7.55337 7.70355 7.80228 7.99557 8.03367 8.06687 8.33952 8.57196 8.69192 8.86892 9.82567 Molecular weight = 287.11amu Principal moments of inertia in cm(-1) A = 0.020178 B = 0.003384 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.284834 B = 8272.381256 C = 9363.619020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.164 3.836 3 N -0.290 5.290 4 N -0.266 5.266 5 C 0.153 3.847 6 C 0.224 3.776 7 N -0.741 5.741 8 C 0.579 3.421 9 O -0.570 6.570 10 C -0.286 4.286 11 C -0.061 4.061 12 C -0.178 4.178 13 C 0.130 3.870 14 C -0.440 4.440 15 H 0.086 0.914 16 C 0.074 3.926 17 N -0.770 5.770 18 Si 0.915 3.085 19 H -0.260 1.260 20 H -0.275 1.275 21 H -0.262 1.262 22 C -0.239 4.239 23 C -0.018 4.018 24 O -0.219 6.219 25 H 0.099 0.901 26 H 0.095 0.905 27 H 0.107 0.893 28 H 0.113 0.887 29 H 0.097 0.903 30 H 0.402 0.598 31 H 0.087 0.913 32 H 0.120 0.880 33 H 0.288 0.712 34 H 0.099 0.901 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.168 3.996 -7.538 13.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.047 4.047 3 N -0.138 5.138 4 N -0.114 5.114 5 C -0.059 4.059 6 C 0.098 3.902 7 N -0.397 5.397 8 C 0.375 3.625 9 O -0.451 6.451 10 C -0.291 4.291 11 C -0.081 4.081 12 C -0.197 4.197 13 C 0.126 3.874 14 C -0.467 4.467 15 H 0.104 0.896 16 C -0.148 4.148 17 N -0.393 5.393 18 Si 0.738 3.262 19 H -0.184 1.184 20 H -0.200 1.200 21 H -0.186 1.186 22 C -0.259 4.259 23 C -0.037 4.037 24 O -0.098 6.098 25 H 0.118 0.882 26 H 0.113 0.887 27 H 0.126 0.874 28 H 0.131 0.869 29 H 0.115 0.885 30 H 0.237 0.763 31 H 0.105 0.895 32 H 0.138 0.862 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.586 4.885 -8.104 13.469 hybrid contribution -0.662 -0.945 1.160 1.636 sum -10.248 3.940 -6.944 12.991 Atomic orbital electron populations 1.20383 0.80037 1.05941 1.05275 1.28121 0.97982 0.79661 0.98902 1.74447 0.96008 1.25583 1.17766 1.74456 1.12217 1.09096 1.15608 1.28032 0.85262 0.91677 1.00907 1.19475 0.85961 0.97415 0.87314 1.45905 1.30549 1.57323 1.05971 1.18592 0.78057 0.75747 0.90110 1.90658 1.54432 1.53456 1.46551 1.18764 1.03956 1.16835 0.89551 1.20455 0.96645 0.97597 0.93372 1.20974 1.00705 1.03018 0.94985 1.17794 0.90291 0.86586 0.92697 1.19854 0.96199 1.39311 0.91344 0.89608 1.26124 0.94344 0.91753 1.02558 1.69737 1.02138 1.31034 1.36352 0.86236 0.79415 0.80464 0.80046 1.18405 1.20015 1.18606 1.20722 1.04248 1.08670 0.92222 1.20349 0.93523 0.93771 0.96099 1.84820 1.17503 1.38268 1.69191 0.88233 0.88671 0.87403 0.86937 0.88479 0.76258 0.89538 0.86176 0.90095 0.88242 0.87935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.32 10.51 36.00 0.38 0.06 16 2 C 0.16 1.82 8.48 -12.94 -0.11 1.71 16 3 N -0.29 -4.09 12.22 32.55 0.40 -3.69 16 4 N -0.27 -4.07 12.22 32.55 0.40 -3.67 16 5 C 0.15 2.09 7.85 -12.94 -0.10 1.99 16 6 C 0.22 3.07 6.30 -5.20 -0.03 3.03 16 7 N -0.74 -12.22 5.50 -62.49 -0.34 -12.56 16 8 C 0.58 11.85 7.76 -12.42 -0.10 11.75 16 9 O -0.57 -12.81 16.32 5.29 0.09 -12.72 16 10 C -0.29 -6.40 5.89 -104.73 -0.62 -7.02 16 11 C -0.06 -1.35 9.47 -39.61 -0.38 -1.73 16 12 C -0.18 -4.30 8.64 -39.27 -0.34 -4.64 16 13 C 0.13 3.25 5.58 -106.80 -0.60 2.65 16 14 C -0.44 -10.75 9.04 -37.75 -0.34 -11.09 16 15 H 0.09 1.99 7.91 -52.49 -0.42 1.58 16 16 C 0.07 1.69 5.14 -17.31 -0.09 1.61 16 17 N -0.77 -18.15 10.95 55.56 0.61 -17.54 16 18 Si 0.92 17.00 29.60 -169.99 -5.03 11.96 16 19 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 20 H -0.28 -4.97 7.11 56.52 0.40 -4.57 16 21 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 22 C -0.24 -5.67 9.73 -39.27 -0.38 -6.05 16 23 C -0.02 -0.42 9.52 -39.61 -0.38 -0.80 16 24 O -0.22 -2.75 10.87 5.39 0.06 -2.69 16 25 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.10 1.22 8.14 -51.92 -0.42 0.80 16 30 H 0.40 6.29 6.46 -40.82 -0.26 6.03 16 31 H 0.09 1.64 6.37 -52.49 -0.33 1.31 16 32 H 0.12 2.95 6.15 -52.49 -0.32 2.63 16 33 H 0.29 6.12 8.29 -40.82 -0.34 5.78 16 34 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 35 H 0.10 2.26 7.63 -52.49 -0.40 1.85 16 LS Contribution 314.50 15.07 4.74 4.74 Total: -1.00 -29.80 314.50 -5.57 -35.38 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -3.41 Total: 9.33 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -3.08 Total: -8.52 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 1.06 Total: -37.47 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: 0.14 Total: -15.42 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -5.03 Total: 11.96 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.80 -5.57 -35.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324483948.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.379 kcal (2) G-P(sol) polarization free energy of solvation -29.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds