Wall clock time and date at job start Tue Mar 31 2020 06:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30278 * 126.28404 * 2 1 4 4 N 1.28663 * 109.38288 * 180.02562 * 3 2 1 5 5 C 1.30272 * 109.38144 * 359.97438 * 4 3 2 6 6 C 1.50699 * 126.27881 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.47253 * 90.03106 * 6 5 4 8 8 C 1.34783 * 119.99819 * 179.97438 * 7 6 5 9 9 O 1.21586 * 120.00186 * 359.97438 * 8 7 6 10 10 C 1.47642 * 119.99765 * 179.71985 * 8 7 6 11 11 C 1.40015 * 119.89395 * 0.02562 * 10 8 7 12 12 C 1.36321 * 120.10544 * 179.71765 * 11 10 8 13 13 C 1.40895 * 119.88932 * 0.55022 * 12 11 10 14 14 C 1.41108 * 120.10152 * 179.69677 * 13 12 11 15 15 H 1.07992 * 119.99872 * 204.66399 * 14 13 12 16 16 C 1.40225 * 120.00051 * 24.66454 * 14 13 12 17 17 N 1.30654 * 119.99982 * 17.86632 * 16 14 13 18 18 Si 1.86795 * 120.00136 * 197.86918 * 16 14 13 19 19 H 1.48493 * 109.47526 * 59.99350 * 18 16 14 20 20 H 1.48496 * 109.47534 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46856 * 299.99762 * 18 16 14 22 22 C 1.40889 * 119.79304 * 359.72558 * 13 12 11 23 23 C 1.36323 * 119.89189 * 359.97438 * 22 13 12 24 24 O 1.34355 * 107.43668 * 0.24693 * 5 4 3 25 25 H 1.09004 * 109.46693 * 89.98359 * 1 2 3 26 26 H 1.09003 * 109.47040 * 209.97422 * 1 2 3 27 27 H 1.08994 * 109.47476 * 329.98119 * 1 2 3 28 28 H 1.08996 * 109.47570 * 330.02165 * 6 5 4 29 29 H 1.09008 * 109.46759 * 210.02997 * 6 5 4 30 30 H 0.96998 * 119.99837 * 359.97438 * 7 6 5 31 31 H 1.07996 * 119.94843 * 359.97438 * 11 10 8 32 32 H 1.07994 * 120.05729 * 180.27717 * 12 11 10 33 33 H 0.97000 * 119.99535 * 180.02562 * 17 16 14 34 34 H 1.07996 * 120.04925 * 179.97438 * 22 13 12 35 35 H 1.07994 * 119.94393 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6761 -0.0005 5 6 3.5654 -0.6254 -0.0004 6 6 4.8177 -1.4637 -0.0014 7 7 5.2244 -1.7357 1.3795 8 6 6.3254 -2.4734 1.6248 9 8 6.9809 -2.9134 0.7001 10 6 6.7388 -2.7423 3.0164 11 6 5.9850 -2.2305 4.0796 12 6 6.3595 -2.4810 5.3662 13 6 7.5136 -3.2466 5.6251 14 6 7.9089 -3.5032 6.9552 15 1 8.9428 -3.7206 7.1788 16 6 6.9592 -3.4760 7.9865 17 7 5.6864 -3.5636 7.7050 18 14 7.5139 -3.3145 9.7629 19 1 8.2652 -2.0451 9.9335 20 1 6.3261 -3.3109 10.6541 21 1 8.3915 -4.4600 10.1135 22 6 8.2720 -3.7546 4.5520 23 6 7.8862 -3.5039 3.2687 24 8 2.3022 -1.0831 -0.0052 25 1 -0.3633 0.0003 -1.0277 26 1 -0.3633 -0.8902 0.5134 27 1 -0.3634 0.8897 0.5141 28 1 5.6143 -0.9262 -0.5157 29 1 4.6241 -2.4053 -0.5154 30 1 4.7012 -1.3850 2.1172 31 1 5.1033 -1.6397 3.8800 32 1 5.7751 -2.0895 6.1856 33 1 5.0295 -3.5444 8.4185 34 1 9.1576 -4.3416 4.7457 35 1 8.4671 -3.8926 2.4455 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324483948.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:33 Heat of formation + Delta-G solvation = -6.732252 kcal Electronic energy + Delta-G solvation = -21017.292095 eV Core-core repulsion = 17594.926815 eV Total energy + Delta-G solvation = -3422.365279 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.106 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.43703 -40.86379 -38.97512 -37.38740 -36.33859 -35.69227 -33.88323 -32.21131 -31.32199 -30.32839 -28.20437 -27.03546 -24.16331 -23.70107 -23.33664 -22.75298 -21.45153 -19.39375 -19.06385 -18.67715 -18.00124 -17.33138 -16.91809 -16.40859 -15.96772 -15.75003 -15.62463 -15.13436 -14.92878 -14.45164 -14.15134 -14.04561 -13.89432 -13.68265 -13.62475 -13.55157 -13.21380 -13.07436 -12.86477 -12.65252 -12.38009 -12.15782 -11.81065 -11.39127 -11.14531 -11.03928 -10.60714 -10.33120 -9.59650 -9.43884 -8.81252 -6.50095 -0.13200 0.40033 1.03452 1.12182 1.14297 1.38500 1.43782 1.51942 2.06740 2.16526 2.27118 2.65968 2.75591 3.27767 3.66555 3.72790 3.96181 4.20348 4.26516 4.29207 4.38835 4.44421 4.46029 4.55608 4.68860 4.91582 5.01206 5.03027 5.11789 5.22754 5.27537 5.56763 5.78554 5.90239 5.97897 6.20946 6.45843 6.52565 6.75389 6.86757 7.07675 7.26514 8.13636 Molecular weight = 287.11amu Principal moments of inertia in cm(-1) A = 0.020178 B = 0.003384 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.284834 B = 8272.381256 C = 9363.619020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.182 3.818 3 N -0.328 5.328 4 N -0.291 5.291 5 C 0.149 3.851 6 C 0.227 3.773 7 N -0.728 5.728 8 C 0.584 3.416 9 O -0.591 6.591 10 C -0.295 4.295 11 C -0.054 4.054 12 C -0.199 4.199 13 C 0.103 3.897 14 C -0.472 4.472 15 H 0.087 0.913 16 C 0.038 3.962 17 N -0.797 5.797 18 Si 0.988 3.012 19 H -0.259 1.259 20 H -0.264 1.264 21 H -0.258 1.258 22 C -0.253 4.253 23 C -0.027 4.027 24 O -0.223 6.223 25 H 0.125 0.875 26 H 0.114 0.886 27 H 0.122 0.878 28 H 0.118 0.882 29 H 0.113 0.887 30 H 0.407 0.593 31 H 0.116 0.884 32 H 0.112 0.888 33 H 0.297 0.703 34 H 0.107 0.893 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.821 4.271 -7.476 14.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.028 4.028 3 N -0.175 5.175 4 N -0.138 5.138 5 C -0.063 4.063 6 C 0.102 3.898 7 N -0.383 5.383 8 C 0.378 3.622 9 O -0.474 6.474 10 C -0.299 4.299 11 C -0.073 4.073 12 C -0.218 4.218 13 C 0.099 3.901 14 C -0.499 4.499 15 H 0.106 0.894 16 C -0.182 4.182 17 N -0.420 5.420 18 Si 0.807 3.193 19 H -0.183 1.183 20 H -0.188 1.188 21 H -0.182 1.182 22 C -0.272 4.272 23 C -0.046 4.046 24 O -0.102 6.102 25 H 0.143 0.857 26 H 0.133 0.867 27 H 0.140 0.860 28 H 0.136 0.864 29 H 0.130 0.870 30 H 0.243 0.757 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.109 0.891 34 H 0.125 0.875 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.275 5.187 -8.064 14.801 hybrid contribution -0.286 -1.009 1.015 1.460 sum -11.561 4.178 -7.049 14.170 Atomic orbital electron populations 1.20808 0.76041 1.07532 1.07326 1.29259 0.99601 0.78526 0.95446 1.74405 0.95956 1.26912 1.20192 1.74387 1.13341 1.09919 1.16154 1.27794 0.85659 0.91227 1.01610 1.19556 0.86389 0.98327 0.85492 1.45696 1.29163 1.55756 1.07645 1.18252 0.78829 0.76114 0.88977 1.90646 1.55431 1.54538 1.46808 1.19058 1.03677 1.16248 0.90937 1.20678 0.97198 0.97010 0.92462 1.20997 1.01099 1.04033 0.95685 1.18138 0.91087 0.87313 0.93522 1.20131 0.96836 1.40841 0.92044 0.89448 1.26941 0.94096 0.90698 1.06423 1.69761 1.03160 1.30979 1.38101 0.85152 0.79190 0.80304 0.74624 1.18301 1.18818 1.18163 1.20882 1.04725 1.09169 0.92452 1.20518 0.94064 0.94009 0.96022 1.84842 1.17211 1.38761 1.69379 0.85689 0.86746 0.86012 0.86404 0.86954 0.75682 0.86648 0.87019 0.89150 0.87505 0.87293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.44 10.51 71.23 0.75 0.30 16 2 C 0.18 3.64 8.48 88.34 0.75 4.39 16 3 N -0.33 -8.85 12.22 -165.50 -2.02 -10.88 16 4 N -0.29 -8.65 12.22 -165.51 -2.02 -10.67 16 5 C 0.15 3.89 7.85 88.34 0.69 4.58 16 6 C 0.23 5.88 6.30 85.63 0.54 6.42 16 7 N -0.73 -22.97 5.50 -469.88 -2.58 -25.55 16 8 C 0.58 23.34 7.76 86.73 0.67 24.02 16 9 O -0.59 -26.09 16.32 -3.99 -0.07 -26.16 16 10 C -0.29 -13.09 5.89 -19.93 -0.12 -13.21 16 11 C -0.05 -2.38 9.47 22.25 0.21 -2.17 16 12 C -0.20 -9.77 8.64 22.47 0.19 -9.58 16 13 C 0.10 5.26 5.58 -21.28 -0.12 5.14 16 14 C -0.47 -23.49 9.04 23.46 0.21 -23.28 16 15 H 0.09 4.15 7.91 -2.91 -0.02 4.13 16 16 C 0.04 1.73 5.14 85.35 0.44 2.17 16 17 N -0.80 -37.70 10.95 21.87 0.24 -37.46 16 18 Si 0.99 34.36 29.60 68.60 2.03 36.39 16 19 H -0.26 -8.90 7.11 99.48 0.71 -8.20 16 20 H -0.26 -8.62 7.11 99.48 0.71 -7.91 16 21 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 22 C -0.25 -12.26 9.73 22.47 0.22 -12.04 16 23 C -0.03 -1.25 9.52 22.25 0.21 -1.04 16 24 O -0.22 -5.16 10.87 -3.62 -0.04 -5.20 16 25 H 0.13 0.40 8.14 -2.38 -0.02 0.38 16 26 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 29 H 0.11 2.62 8.14 -2.38 -0.02 2.60 16 30 H 0.41 12.08 6.46 -92.71 -0.60 11.48 16 31 H 0.12 4.23 6.37 -2.91 -0.02 4.21 16 32 H 0.11 5.60 6.15 -2.91 -0.02 5.58 16 33 H 0.30 12.52 8.29 -92.71 -0.77 11.75 16 34 H 0.11 4.84 8.06 -2.91 -0.02 4.81 16 35 H 0.11 4.83 7.63 -2.91 -0.02 4.81 16 Total: -1.00 -64.87 314.50 0.74 -64.13 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: 0.55 Total: 29.68 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 4.65 Total: -14.29 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -6.39 Total: -84.56 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -0.10 Total: -31.36 kcal Atomic # 14 Polarization: 34.36 SS G_CDS: 2.03 Total: 36.39 kcal Total: -64.87 0.74 -64.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324483948.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.400 kcal (2) G-P(sol) polarization free energy of solvation -64.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds