Wall clock time and date at job start Tue Mar 31 2020 06:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35857 * 126.17874 * 2 1 4 4 N 1.30156 * 109.03531 * 179.68780 * 3 2 1 5 5 C 1.35744 * 108.98994 * 0.44075 * 4 3 2 6 6 C 1.47296 * 126.22023 * 179.82009 * 5 4 3 7 7 O 1.21641 * 120.00016 * 179.68953 * 6 5 4 8 8 N 1.34773 * 120.00249 * 359.69156 * 6 5 4 9 9 C 1.39931 * 120.00199 * 175.26719 * 8 6 5 10 10 C 1.38941 * 120.00019 * 35.82743 * 9 8 6 11 11 C 1.37997 * 119.99123 * 180.23181 * 10 9 8 12 12 C 1.38904 * 120.00930 * 359.51656 * 11 10 9 13 13 O 1.35777 * 120.00201 * 180.23150 * 12 11 10 14 14 C 1.34813 * 117.00101 * 186.07621 * 13 12 11 15 15 H 1.08004 * 120.00070 * 5.26995 * 14 13 12 16 16 C 1.38633 * 119.99833 * 185.26239 * 14 13 12 17 17 N 1.31575 * 120.00229 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99776 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47193 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46893 * 120.00502 * 18 16 14 21 21 H 1.48493 * 109.47198 * 240.00185 * 18 16 14 22 22 C 1.38918 * 120.00250 * 0.46105 * 12 11 10 23 23 C 1.37992 * 120.00268 * 359.79358 * 22 12 11 24 24 C 1.35928 * 126.18536 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.47172 * 270.04494 * 1 2 3 26 26 H 1.08998 * 109.47621 * 30.04593 * 1 2 3 27 27 H 1.09006 * 109.46796 * 150.04855 * 1 2 3 28 28 H 1.07996 * 125.48339 * 359.95451 * 3 2 1 29 29 H 0.97001 * 119.99962 * 355.27298 * 8 6 5 30 30 H 1.08001 * 119.99908 * 359.95702 * 10 9 8 31 31 H 1.08002 * 119.99230 * 179.74846 * 11 10 9 32 32 H 0.96993 * 120.00312 * 179.97438 * 17 16 14 33 33 H 1.08004 * 119.99591 * 179.76565 * 22 12 11 34 34 H 1.08001 * 120.00145 * 179.97438 * 23 22 12 35 35 H 1.07993 * 126.60916 * 0.06842 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2670 1.0966 0.0000 4 7 3.5107 0.7130 0.0067 5 6 3.5545 -0.6438 0.0014 6 6 4.7702 -1.4753 0.0023 7 8 4.6775 -2.6882 0.0028 8 7 5.9854 -0.8925 0.0027 9 6 7.1385 -1.6787 0.1035 10 6 7.1849 -2.9255 -0.5080 11 6 8.3205 -3.7027 -0.4043 12 6 9.4206 -3.2346 0.3027 13 8 10.5395 -3.9975 0.4006 14 6 11.5224 -3.5423 1.2032 15 1 11.3661 -2.6546 1.7982 16 6 12.7337 -4.2138 1.2649 17 7 12.9243 -5.2950 0.5398 18 14 14.0959 -3.5826 2.3764 19 1 13.6335 -2.3596 3.0805 20 1 14.4439 -4.6260 3.3742 21 1 15.2929 -3.2609 1.5587 22 6 9.3745 -1.9879 0.9138 23 6 8.2372 -1.2126 0.8148 24 6 2.2675 -1.0971 0.0005 25 1 -0.3633 0.0008 1.0277 26 1 -0.3634 0.8895 -0.5145 27 1 -0.3633 -0.8905 -0.5131 28 1 1.9272 2.1217 -0.0007 29 1 6.0606 0.0721 -0.0669 30 1 6.3308 -3.2880 -1.0605 31 1 8.3551 -4.6736 -0.8762 32 1 13.7719 -5.7646 0.5826 33 1 10.2286 -1.6256 1.4667 34 1 8.2012 -0.2435 1.2902 35 1 1.9481 -2.1287 -0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230142521.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:15 Heat of formation + Delta-G solvation = 34.870825 kcal Electronic energy + Delta-G solvation = -20899.838610 eV Core-core repulsion = 17479.277375 eV Total energy + Delta-G solvation = -3420.561235 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.106 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.36430 -39.75762 -38.45967 -36.34944 -34.50654 -33.69652 -32.10908 -30.16375 -30.05970 -28.31887 -27.15625 -25.30213 -23.51176 -22.12507 -21.58515 -20.96790 -19.85417 -18.25016 -17.81236 -17.11794 -16.40899 -16.18656 -16.00036 -14.75553 -14.73389 -14.49238 -14.20690 -14.07570 -13.80563 -13.48608 -13.42418 -13.24539 -13.13601 -12.71977 -12.40590 -11.76282 -11.49882 -11.41606 -10.96475 -10.68389 -10.54094 -10.39383 -10.07365 -9.77065 -9.46071 -9.20434 -8.89478 -8.62334 -8.10857 -6.83146 -6.38628 -3.96131 1.38574 2.10585 2.28342 2.29162 2.49413 3.16733 3.18137 3.23823 3.49008 3.65207 4.02426 4.18596 4.23803 4.47518 4.57602 4.66580 4.84557 4.99689 5.17233 5.26314 5.39861 5.67726 5.69808 5.89374 6.15920 6.25625 6.33345 6.40984 6.68140 6.91304 6.95527 7.10288 7.25348 7.30266 7.46394 7.53488 7.87691 7.93219 8.06512 8.52540 9.07111 9.78780 10.79670 Molecular weight = 287.11amu Principal moments of inertia in cm(-1) A = 0.051607 B = 0.002728 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.430831 B =10260.886790 C =10634.427011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.466 5.466 3 C 0.185 3.815 4 N -0.466 5.466 5 C -0.055 4.055 6 C 0.595 3.405 7 O -0.533 6.533 8 N -0.645 5.645 9 C 0.037 3.963 10 C -0.067 4.067 11 C -0.179 4.179 12 C 0.147 3.853 13 O -0.178 6.178 14 C -0.389 4.389 15 H 0.092 0.908 16 C 0.037 3.963 17 N -0.863 5.863 18 Si 0.941 3.059 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.219 4.219 23 C -0.088 4.088 24 C 0.031 3.969 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.211 0.789 29 H 0.410 0.590 30 H 0.129 0.871 31 H 0.121 0.879 32 H 0.269 0.731 33 H 0.131 0.869 34 H 0.111 0.889 35 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.500 13.203 -0.860 26.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.148 5.148 3 C -0.098 4.098 4 N -0.185 5.185 5 C -0.184 4.184 6 C 0.382 3.618 7 O -0.410 6.410 8 N -0.288 5.288 9 C -0.055 4.055 10 C -0.087 4.087 11 C -0.199 4.199 12 C 0.093 3.907 13 O -0.082 6.082 14 C -0.465 4.465 15 H 0.109 0.891 16 C -0.166 4.166 17 N -0.498 5.498 18 Si 0.766 3.234 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.239 4.239 23 C -0.109 4.109 24 C -0.107 4.107 25 H 0.099 0.901 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.228 0.772 29 H 0.245 0.755 30 H 0.147 0.853 31 H 0.139 0.861 32 H 0.079 0.921 33 H 0.149 0.851 34 H 0.129 0.871 35 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -22.765 12.479 -0.976 25.980 hybrid contribution -0.114 0.504 0.606 0.797 sum -22.879 12.983 -0.369 26.309 Atomic orbital electron populations 1.22134 0.75829 1.05118 1.04033 1.45495 1.08186 1.06928 1.54217 1.25180 0.85180 0.93584 1.05890 1.70572 1.19569 1.10544 1.17772 1.20605 0.93249 0.90408 1.14111 1.16912 0.81841 0.86470 0.76602 1.90799 1.86504 1.13205 1.50466 1.42973 1.03906 1.10515 1.71438 1.17289 0.87350 0.94809 1.06100 1.20752 0.97062 0.93140 0.97750 1.20135 0.92097 1.01467 1.06209 1.19433 0.88220 0.89769 0.93289 1.84001 1.21595 1.43283 1.59274 1.21357 0.92044 1.12735 1.20408 0.89074 1.25284 0.97572 0.95862 0.97928 1.70057 1.24996 1.16574 1.38215 0.85651 0.79953 0.78763 0.79073 1.19122 1.20211 1.20208 1.20977 0.99359 0.95863 1.07702 1.20512 0.92937 0.99477 0.97926 1.22751 0.90070 0.93157 1.04693 0.90110 0.89049 0.89248 0.77218 0.75484 0.85305 0.86134 0.92139 0.85111 0.87074 0.79355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.16 11.16 59.85 0.67 0.82 16 2 N -0.47 -3.30 3.14 -125.62 -0.39 -3.70 16 3 C 0.19 1.49 12.56 -89.91 -1.13 0.36 16 4 N -0.47 -5.63 11.00 -11.04 -0.12 -5.75 16 5 C -0.05 -0.74 6.97 -83.10 -0.58 -1.32 16 6 C 0.59 9.99 7.65 -12.58 -0.10 9.89 16 7 O -0.53 -10.37 14.35 5.24 0.08 -10.30 16 8 N -0.65 -10.70 5.33 -10.83 -0.06 -10.76 16 9 C 0.04 0.72 6.29 -83.64 -0.53 0.20 16 10 C -0.07 -1.41 8.68 -39.41 -0.34 -1.75 16 11 C -0.18 -4.11 9.98 -39.42 -0.39 -4.51 16 12 C 0.15 3.70 6.65 -39.08 -0.26 3.44 16 13 O -0.18 -5.22 9.75 0.01 0.00 -5.22 16 14 C -0.39 -11.08 9.44 30.88 0.29 -10.79 16 15 H 0.09 2.40 5.29 -52.48 -0.28 2.12 16 16 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 17 N -0.86 -25.79 13.67 55.48 0.76 -25.03 16 18 Si 0.94 20.89 29.55 -169.99 -5.02 15.87 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 22 C -0.22 -4.93 9.13 -39.42 -0.36 -5.29 16 23 C -0.09 -1.72 9.96 -39.41 -0.39 -2.11 16 24 C 0.03 0.32 11.29 -16.38 -0.19 0.14 16 25 H 0.08 0.11 8.14 -51.93 -0.42 -0.32 16 26 H 0.09 0.02 8.14 -51.93 -0.42 -0.41 16 27 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 28 H 0.21 0.77 8.06 -52.49 -0.42 0.35 16 29 H 0.41 5.87 8.54 -40.82 -0.35 5.52 16 30 H 0.13 2.62 6.27 -52.49 -0.33 2.30 16 31 H 0.12 2.66 8.06 -52.49 -0.42 2.24 16 32 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.13 2.90 5.71 -52.48 -0.30 2.60 16 34 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.19 1.63 8.06 -52.49 -0.42 1.20 16 LS Contribution 314.15 15.07 4.73 4.73 Total: -1.00 -36.15 314.15 -6.78 -42.93 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -3.35 Total: 7.20 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -3.40 Total: -9.97 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 0.18 Total: -45.24 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: 0.08 Total: -15.51 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -36.15 -6.78 -42.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230142521.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.797 kcal (2) G-P(sol) polarization free energy of solvation -36.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds