Wall clock time and date at job start Tue Mar 31 2020 05:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46916 * 2 1 4 4 C 1.50696 * 109.47341 * 239.99593 * 2 1 3 5 5 H 1.07998 * 120.00244 * 240.00038 * 4 2 1 6 6 C 1.37881 * 119.99729 * 60.00075 * 4 2 1 7 7 N 1.31506 * 120.00366 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99757 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47157 * 90.00095 * 8 6 4 10 10 H 1.48504 * 109.47035 * 210.00268 * 8 6 4 11 11 H 1.48502 * 109.46999 * 330.00079 * 8 6 4 12 12 N 1.46505 * 109.46864 * 119.99788 * 2 1 3 13 13 C 1.34777 * 119.99724 * 275.00347 * 12 2 1 14 14 O 1.21563 * 120.00284 * 359.97438 * 13 12 2 15 15 C 1.47790 * 119.99706 * 179.72320 * 13 12 2 16 16 C 1.40614 * 119.73195 * 0.02562 * 15 13 12 17 17 C 1.35965 * 120.81326 * 179.70421 * 16 15 13 18 18 F 1.35102 * 120.01461 * 180.27631 * 17 16 15 19 19 C 1.40887 * 119.96675 * 0.56380 * 17 16 15 20 20 C 1.40450 * 121.04669 * 179.73629 * 19 17 16 21 21 C 1.36152 * 119.72322 * 179.97438 * 20 19 17 22 22 C 1.39361 * 121.00543 * 0.02562 * 21 20 19 23 23 C 1.36093 * 120.94739 * 359.97438 * 22 21 20 24 24 C 1.40653 * 119.66139 * 0.02562 * 23 22 21 25 25 C 1.38476 * 119.73299 * 180.26984 * 15 13 12 26 26 H 1.08991 * 109.47246 * 300.00614 * 1 2 3 27 27 H 1.08998 * 109.46377 * 60.00617 * 1 2 3 28 28 H 1.09002 * 109.46916 * 179.97438 * 1 2 3 29 29 H 0.97000 * 120.00380 * 180.02562 * 7 6 4 30 30 H 0.97000 * 119.99792 * 94.99915 * 12 2 1 31 31 H 1.08002 * 119.59362 * 0.02562 * 16 15 13 32 32 H 1.07998 * 120.13334 * 359.95981 * 20 19 17 33 33 H 1.07997 * 119.49520 * 180.02562 * 21 20 19 34 34 H 1.07997 * 119.52322 * 180.02562 * 22 21 20 35 35 H 1.07998 * 120.16408 * 180.02562 * 23 22 21 36 36 H 1.08001 * 120.24859 * 0.02735 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7105 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6035 8 14 2.3215 -1.1205 -4.0078 9 1 1.3429 -2.1619 -4.4117 10 1 2.4868 -0.1416 -5.1122 11 1 3.6295 -1.7585 -3.7120 12 7 2.0184 -0.6906 1.1963 13 6 2.1470 -0.0182 2.3572 14 8 1.8583 1.1614 2.4116 15 6 2.6337 -0.7163 3.5654 16 6 2.9616 -2.0820 3.4973 17 6 3.4170 -2.7445 4.5938 18 9 3.7325 -4.0554 4.5086 19 6 3.5540 -2.0648 5.8202 20 6 4.0171 -2.7282 6.9682 21 6 4.1397 -2.0449 8.1395 22 6 3.8117 -0.6928 8.2195 23 6 3.3598 -0.0165 7.1284 24 6 3.2202 -0.6892 5.9010 25 6 2.7585 -0.0215 4.7567 26 1 -0.3633 0.5139 0.8898 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7091 1.1612 -3.4845 30 1 2.2490 -1.6318 1.1527 31 1 2.8551 -2.6100 2.5611 32 1 4.2746 -3.7760 6.9222 33 1 4.4965 -2.5585 9.0199 34 1 3.9185 -0.1740 9.1607 35 1 3.1097 1.0314 7.2045 36 1 2.5012 1.0263 4.8049 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336241821.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:38 Heat of formation + Delta-G solvation = -44.147994 kcal Electronic energy + Delta-G solvation = -21432.042114 eV Core-core repulsion = 17988.134404 eV Total energy + Delta-G solvation = -3443.907709 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.106 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.03473 -40.48422 -38.91048 -36.21487 -34.88418 -32.62978 -32.43558 -30.85867 -29.27587 -28.67765 -25.29754 -24.37371 -23.59877 -22.03000 -21.30117 -19.81996 -18.38157 -17.84209 -17.00250 -16.51285 -15.85571 -15.79200 -15.53392 -15.16562 -14.66678 -14.28630 -14.23856 -14.13824 -13.64695 -13.35860 -13.11817 -12.74616 -12.51718 -12.19380 -11.77629 -11.40328 -11.30264 -11.28374 -11.12227 -10.94852 -10.76033 -10.35329 -10.26008 -10.02784 -9.27338 -9.08071 -8.91749 -8.58875 -8.07475 -7.91215 -6.14862 -4.24457 0.19808 0.57425 1.72174 2.45056 3.23552 3.30452 3.32699 3.54457 3.85860 3.99628 4.04379 4.33629 4.36941 4.57036 4.65090 4.89393 5.00705 5.06087 5.10201 5.17746 5.28014 5.51348 5.62631 5.75991 5.88276 6.00609 6.09867 6.20423 6.32635 6.55227 6.69978 6.79979 6.92990 7.10789 7.37211 7.50785 7.65654 7.87297 8.11076 8.56811 8.72549 8.99976 9.42899 10.91172 Molecular weight = 287.11amu Principal moments of inertia in cm(-1) A = 0.028574 B = 0.003631 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.689185 B = 7710.118340 C = 8446.412258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.263 3.737 3 H 0.052 0.948 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.699 5.699 13 C 0.542 3.458 14 O -0.546 6.546 15 C -0.096 4.096 16 C -0.123 4.123 17 C 0.101 3.899 18 F -0.133 7.133 19 C -0.069 4.069 20 C -0.105 4.105 21 C -0.111 4.111 22 C -0.115 4.115 23 C -0.096 4.096 24 C -0.038 4.038 25 C -0.052 4.052 26 H 0.016 0.984 27 H 0.092 0.908 28 H 0.027 0.973 29 H 0.265 0.735 30 H 0.389 0.611 31 H 0.143 0.857 32 H 0.131 0.869 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.135 0.865 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.258 -6.209 19.399 21.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.069 0.931 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.346 5.346 13 C 0.327 3.673 14 O -0.426 6.426 15 C -0.100 4.100 16 C -0.142 4.142 17 C 0.081 3.919 18 F -0.112 7.112 19 C -0.070 4.070 20 C -0.123 4.123 21 C -0.129 4.129 22 C -0.133 4.133 23 C -0.114 4.114 24 C -0.039 4.039 25 C -0.072 4.072 26 H 0.035 0.965 27 H 0.110 0.890 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.222 0.778 31 H 0.161 0.839 32 H 0.149 0.851 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.153 0.847 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.964 -5.293 19.213 20.537 hybrid contribution 0.463 -1.284 -0.959 1.668 sum 5.427 -6.578 18.254 20.148 Atomic orbital electron populations 1.22088 0.98234 0.99262 1.01052 1.18823 0.91172 0.94083 0.79709 0.93066 1.21205 1.32633 1.13321 0.90278 0.92017 1.24881 0.94763 0.94916 0.99067 1.69894 1.35798 1.22356 1.23964 0.86435 0.79206 0.79279 0.82120 1.20505 1.21027 1.19808 1.46536 1.64087 1.13604 1.10404 1.18074 0.79156 0.86799 0.83249 1.90741 1.51478 1.15393 1.85017 1.20038 1.01515 0.92898 0.95503 1.20989 1.00008 0.94598 0.98604 1.17104 1.02306 0.78480 0.93978 1.91496 1.90605 1.32315 1.96778 1.18103 1.01941 0.93836 0.93095 1.20967 0.99124 1.00200 0.91984 1.20880 0.99591 0.94625 0.97791 1.20915 0.98993 0.94594 0.98820 1.21115 0.98666 1.00176 0.91427 1.17879 0.99528 0.91918 0.94529 1.21555 0.94854 1.00718 0.90038 0.96522 0.88991 0.95372 0.92507 0.77759 0.83943 0.85118 0.85632 0.85550 0.84698 0.83327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.26 37.16 0.34 -3.32 16 2 C 0.26 6.69 2.56 -69.08 -0.18 6.52 16 3 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 4 C -0.54 -14.16 8.73 -34.44 -0.30 -14.46 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.73 11.32 55.43 0.63 -24.10 16 8 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.70 -14.69 5.02 -55.89 -0.28 -14.97 16 13 C 0.54 11.03 7.73 -12.35 -0.10 10.93 16 14 O -0.55 -12.95 15.96 5.31 0.08 -12.87 16 15 C -0.10 -1.55 5.87 -105.01 -0.62 -2.16 16 16 C -0.12 -1.74 9.41 -39.50 -0.37 -2.11 16 17 C 0.10 1.34 7.23 -39.40 -0.28 1.06 16 18 F -0.13 -1.73 16.61 2.25 0.04 -1.70 16 19 C -0.07 -0.86 5.75 -106.71 -0.61 -1.48 16 20 C -0.10 -1.08 9.59 -39.50 -0.38 -1.46 16 21 C -0.11 -0.94 9.95 -39.91 -0.40 -1.34 16 22 C -0.12 -0.96 9.95 -39.93 -0.40 -1.36 16 23 C -0.10 -0.94 9.77 -39.44 -0.39 -1.33 16 24 C -0.04 -0.48 5.74 -106.86 -0.61 -1.09 16 25 C -0.05 -0.75 9.34 -38.72 -0.36 -1.11 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.39 7.08 6.52 -40.82 -0.27 6.82 16 31 H 0.14 1.85 6.34 -52.49 -0.33 1.52 16 32 H 0.13 1.16 7.70 -52.49 -0.40 0.75 16 33 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.15 2.05 7.61 -52.49 -0.40 1.65 16 LS Contribution 314.25 15.07 4.74 4.74 Total: -1.00 -30.50 314.25 -8.32 -38.82 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -3.77 Total: 5.54 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -4.74 Total: -11.00 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.35 Total: -39.07 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.08 Total: -12.87 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.50 -8.32 -38.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336241821.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.328 kcal (2) G-P(sol) polarization free energy of solvation -30.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds