Wall clock time and date at job start Tue Mar 31 2020 06:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47294 * 180.02562 * 9 7 2 11 11 C 1.35343 * 126.75356 * 124.71144 * 10 9 7 12 12 N 1.35315 * 106.17354 * 179.85133 * 11 10 9 13 13 C 1.46504 * 125.86877 * 180.11570 * 12 11 10 14 14 H 1.08997 * 110.27161 * 204.70477 * 13 12 11 15 15 C 1.54350 * 110.30163 * 82.52597 * 13 12 11 16 16 C 1.54349 * 102.39184 * 267.43277 * 15 13 12 17 17 C 1.51374 * 105.17473 * 333.64457 * 16 15 13 18 18 C 1.38517 * 130.36218 * 197.15700 * 17 16 15 19 19 C 1.38060 * 120.25391 * 180.02562 * 18 17 16 20 20 C 1.38478 * 119.90524 * 0.02562 * 19 18 17 21 21 F 1.35100 * 120.05491 * 179.97438 * 20 19 18 22 22 C 1.38323 * 119.88628 * 0.02562 * 20 19 18 23 23 C 1.38239 * 109.75055 * 17.18908 * 17 16 15 24 24 N 1.28712 * 108.26523 * 0.41667 * 12 11 10 25 25 N 1.28636 * 110.17406 * 359.73283 * 24 12 11 26 26 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 28 28 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 29 29 H 1.07996 * 126.91300 * 359.97438 * 11 10 9 30 30 H 1.08994 * 110.81934 * 25.65855 * 15 13 12 31 31 H 1.08998 * 110.82331 * 149.20818 * 15 13 12 32 32 H 1.09002 * 110.30437 * 214.71703 * 16 15 13 33 33 H 1.08998 * 110.38123 * 92.60806 * 16 15 13 34 34 H 1.08001 * 119.87234 * 0.03960 * 18 17 16 35 35 H 1.07997 * 120.04577 * 180.02562 * 19 18 17 36 36 H 1.07995 * 119.90642 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2303 -3.6446 -0.0015 11 6 2.2865 -4.6618 0.8895 12 7 3.3137 -5.4503 0.4971 13 6 3.7538 -6.6802 1.1604 14 1 4.8032 -6.8742 0.9386 15 6 2.8807 -7.8718 0.7131 16 6 1.7771 -7.8972 1.7920 17 6 2.4080 -7.2738 3.0187 18 6 2.0179 -7.3151 4.3472 19 6 2.7594 -6.6607 5.3105 20 6 3.8973 -5.9597 4.9479 21 9 4.6248 -5.3178 5.8881 22 6 4.2870 -5.9170 3.6214 23 6 3.5439 -6.5746 2.6557 24 7 3.8418 -4.9307 -0.5555 25 7 3.2185 -3.8529 -0.8786 26 1 -0.4849 0.8401 0.0004 27 1 0.6240 -2.5575 0.8880 28 1 0.6246 -2.5563 -0.8919 29 1 1.6401 -4.8147 1.7411 30 1 2.4540 -7.6907 -0.2734 31 1 3.4546 -8.7984 0.7240 32 1 1.4765 -8.9238 2.0015 33 1 0.9172 -7.3103 1.4693 34 1 1.1304 -7.8615 4.6305 35 1 2.4524 -6.6955 6.3454 36 1 5.1741 -5.3700 3.3383 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603242221.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:15 Heat of formation + Delta-G solvation = 76.394560 kcal Electronic energy + Delta-G solvation = -21854.339750 eV Core-core repulsion = 18447.951909 eV Total energy + Delta-G solvation = -3406.387841 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.113 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.09560 -42.66320 -40.33827 -36.27175 -33.67935 -32.68739 -31.45652 -30.87659 -29.13402 -27.78051 -27.00605 -23.55475 -23.22000 -22.64045 -21.46892 -20.64350 -20.07491 -17.78864 -16.94367 -16.65779 -16.19281 -15.89512 -15.76796 -15.45861 -14.70776 -14.60092 -14.33011 -14.07882 -13.93457 -13.30884 -12.76879 -12.57980 -12.46651 -12.20892 -12.01838 -11.80377 -11.69351 -11.40707 -11.24269 -10.98562 -10.72358 -10.63592 -10.10379 -9.69990 -9.51204 -9.33894 -9.24978 -8.80642 -8.42000 -8.11333 -5.97387 -3.97733 0.68225 0.84974 2.20876 2.71269 3.31559 3.38442 3.42849 3.46098 3.53493 3.58652 4.01240 4.09919 4.53038 4.54146 4.56577 4.61808 4.74738 4.77972 5.08736 5.16042 5.25205 5.33410 5.39799 5.46042 5.51302 5.65607 5.73470 5.78802 5.85751 5.89043 6.08379 6.10809 6.34759 6.51998 7.13875 7.18941 7.54308 7.63799 8.00538 8.39077 9.05588 9.31392 9.65053 11.13787 Molecular weight = 287.11amu Principal moments of inertia in cm(-1) A = 0.016115 B = 0.004648 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.088038 B = 6022.015134 C = 6862.719325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.502 4.502 8 H 0.058 0.942 9 C 0.093 3.907 10 C 0.034 3.966 11 C -0.072 4.072 12 N -0.296 5.296 13 C 0.191 3.809 14 H 0.119 0.881 15 C -0.126 4.126 16 C -0.086 4.086 17 C -0.084 4.084 18 C -0.082 4.082 19 C -0.135 4.135 20 C 0.097 3.903 21 F -0.136 7.136 22 C -0.113 4.113 23 C -0.094 4.094 24 N -0.110 5.110 25 N -0.259 5.259 26 H 0.261 0.739 27 H 0.035 0.965 28 H 0.039 0.961 29 H 0.174 0.826 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.797 -20.470 10.068 23.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.541 4.541 8 H 0.077 0.923 9 C 0.054 3.946 10 C -0.103 4.103 11 C -0.220 4.220 12 N -0.092 5.092 13 C 0.089 3.911 14 H 0.137 0.863 15 C -0.165 4.165 16 C -0.123 4.123 17 C -0.085 4.085 18 C -0.100 4.100 19 C -0.154 4.154 20 C 0.077 3.923 21 F -0.115 7.115 22 C -0.132 4.132 23 C -0.095 4.095 24 N -0.088 5.088 25 N -0.126 5.126 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.192 0.808 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.154 0.846 35 H 0.159 0.841 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.792 -20.461 9.010 22.865 hybrid contribution -0.140 1.174 1.238 1.712 sum 4.652 -19.287 10.248 22.331 Atomic orbital electron populations 1.69950 1.05957 1.26724 1.51206 1.24963 0.94872 0.99195 0.95344 0.86518 0.79748 0.83119 0.78210 1.20524 1.21285 1.19957 1.21042 0.93240 0.89772 1.50058 0.92324 1.17718 0.90885 0.87570 0.98426 1.23005 0.97864 0.97675 0.91757 1.23196 0.97586 0.95891 1.05346 1.47193 1.22644 1.18944 1.20387 1.20696 1.01351 0.81993 0.87098 0.86298 1.22717 0.96725 0.96956 1.00058 1.21157 0.98580 1.01650 0.90938 1.20666 0.95100 0.98007 0.94729 1.20459 0.99673 0.99073 0.90770 1.21136 0.94505 0.98580 1.01180 1.17437 0.92304 0.96664 0.85848 1.91526 1.76509 1.79613 1.63802 1.20604 1.01547 1.00268 0.90784 1.20098 0.96564 0.99232 0.93611 1.78218 1.21574 1.07157 1.01822 1.75062 1.06835 1.06899 1.23782 0.92942 0.94665 0.94316 0.80845 0.88952 0.88482 0.89458 0.89059 0.84600 0.84139 0.84595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 22.42 29.54 -169.99 -5.02 17.40 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.50 -14.72 9.09 -34.44 -0.31 -15.04 16 8 H 0.06 1.76 7.74 -52.49 -0.41 1.35 16 9 C 0.09 2.46 5.55 -29.03 -0.16 2.30 16 10 C 0.03 0.79 6.44 -82.78 -0.53 0.26 16 11 C -0.07 -1.34 10.66 -17.05 -0.18 -1.52 16 12 N -0.30 -4.95 3.28 -54.87 -0.18 -5.13 16 13 C 0.19 2.21 3.89 -68.04 -0.26 1.95 16 14 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 15 C -0.13 -1.08 6.78 -25.32 -0.17 -1.25 16 16 C -0.09 -0.68 6.75 -26.85 -0.18 -0.86 16 17 C -0.08 -0.79 6.04 -104.19 -0.63 -1.41 16 18 C -0.08 -0.68 10.04 -39.54 -0.40 -1.07 16 19 C -0.14 -1.23 10.03 -39.56 -0.40 -1.63 16 20 C 0.10 1.10 7.30 -39.46 -0.29 0.81 16 21 F -0.14 -1.68 17.27 2.25 0.04 -1.65 16 22 C -0.11 -1.33 10.02 -39.46 -0.40 -1.72 16 23 C -0.09 -1.04 4.74 -104.21 -0.49 -1.53 16 24 N -0.11 -2.24 13.17 60.35 0.79 -1.45 16 25 N -0.26 -6.21 12.40 33.28 0.41 -5.80 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.04 0.93 8.12 -51.93 -0.42 0.51 16 28 H 0.04 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.17 2.85 7.81 -52.49 -0.41 2.44 16 30 H 0.09 0.90 8.08 -51.93 -0.42 0.48 16 31 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 35 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 36 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 317.98 15.07 4.79 4.79 Total: -1.00 -33.67 317.98 -7.11 -40.78 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: -4.17 Total: -3.61 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -4.50 Total: -19.17 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 1.76 Total: -38.53 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.67 -7.11 -40.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603242221.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.170 kcal (2) G-P(sol) polarization free energy of solvation -33.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds