Wall clock time and date at job start Tue Mar 31 2020 06:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35904 * 116.99854 * 2 1 4 4 C 1.38793 * 120.00041 * 0.02562 * 3 2 1 5 5 C 1.38418 * 120.07406 * 180.02562 * 4 3 2 6 6 F 1.35101 * 119.95344 * 179.97438 * 5 4 3 7 7 C 1.38360 * 120.08921 * 359.97438 * 5 4 3 8 8 C 1.38953 * 120.00020 * 359.97438 * 7 5 4 9 9 N 1.39582 * 120.03753 * 180.02562 * 8 7 5 10 10 C 1.38818 * 119.99906 * 335.48902 * 9 8 7 11 11 C 1.39600 * 119.84462 * 327.43032 * 10 9 8 12 12 C 1.36315 * 120.15941 * 179.72036 * 11 10 9 13 13 C 1.40900 * 119.83630 * 0.57233 * 12 11 10 14 14 C 1.41108 * 120.15438 * 179.67561 * 13 12 11 15 15 H 1.08003 * 120.00293 * 207.55047 * 14 13 12 16 16 C 1.39850 * 119.99905 * 27.55262 * 14 13 12 17 17 N 1.30917 * 119.99537 * 12.59362 * 16 14 13 18 18 Si 1.86795 * 120.00142 * 192.58945 * 16 14 13 19 19 H 1.48504 * 109.47134 * 60.00303 * 18 16 14 20 20 H 1.48500 * 109.46980 * 180.02562 * 18 16 14 21 21 H 1.48491 * 109.47226 * 300.00228 * 18 16 14 22 22 C 1.40904 * 119.69712 * 359.70339 * 13 12 11 23 23 C 1.36315 * 119.83631 * 359.97438 * 22 13 12 24 24 C 1.38569 * 120.00530 * 180.02562 * 3 2 1 25 25 H 1.08998 * 109.46611 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47539 * 299.99999 * 1 2 3 27 27 H 1.09009 * 109.46939 * 60.00255 * 1 2 3 28 28 H 1.08000 * 119.96153 * 359.73885 * 4 3 2 29 29 H 1.08000 * 119.99990 * 180.02562 * 7 5 4 30 30 H 0.96999 * 120.00525 * 155.47971 * 9 8 7 31 31 H 1.08002 * 119.92262 * 359.97438 * 11 10 9 32 32 H 1.07994 * 120.08251 * 180.29267 * 12 11 10 33 33 H 0.97003 * 119.99661 * 180.02562 * 17 16 14 34 34 H 1.07998 * 120.08717 * 179.97438 * 22 13 12 35 35 H 1.07999 * 119.91884 * 180.02562 * 23 22 13 36 36 H 1.08004 * 120.04040 * 359.95943 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2900 2.3749 0.0005 5 6 1.9168 3.6091 0.0000 6 9 1.1786 4.7405 0.0000 7 6 3.2983 3.6854 -0.0005 8 6 4.0584 2.5223 0.0000 9 7 5.4522 2.5984 0.0000 10 6 6.0855 3.7283 -0.4992 11 6 5.5095 4.4387 -1.5539 12 6 6.1231 5.5523 -2.0454 13 6 7.3476 5.9790 -1.4942 14 6 7.9920 7.1269 -2.0023 15 1 9.0658 7.2188 -1.9327 16 6 7.2400 8.1457 -2.5961 17 7 5.9375 8.1590 -2.4652 18 14 8.0942 9.4874 -3.5756 19 1 8.8320 8.8779 -4.7111 20 1 7.0817 10.4404 -4.0971 21 1 9.0479 10.2109 -2.6969 22 6 7.9261 5.2538 -0.4336 23 6 7.2982 4.1458 0.0523 24 6 3.4297 1.2836 -0.0005 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.2115 2.3177 -0.0033 29 1 3.7858 4.6491 -0.0005 30 1 5.9782 1.8619 0.3490 31 1 4.5735 4.1075 -1.9789 32 1 5.6740 6.1036 -2.8582 33 1 5.4159 8.8654 -2.8774 34 1 8.8647 5.5750 -0.0067 35 1 7.7402 3.5892 0.8654 36 1 4.0187 0.3783 -0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175010621.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:05 Heat of formation + Delta-G solvation = -34.138399 kcal Electronic energy + Delta-G solvation = -21442.705067 eV Core-core repulsion = 17999.231406 eV Total energy + Delta-G solvation = -3443.473661 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.106 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.60413 -40.03859 -38.64622 -37.01289 -34.73923 -33.09134 -30.38397 -29.80180 -29.39427 -28.17254 -27.15786 -24.73494 -22.61247 -21.94009 -21.02661 -20.32054 -18.24624 -17.40408 -17.07208 -16.26711 -15.96048 -15.85316 -15.36460 -15.24077 -15.12247 -14.94519 -14.26706 -14.02308 -13.45110 -12.91890 -12.80910 -12.43471 -12.18293 -12.14106 -11.90766 -11.75369 -11.36799 -11.26481 -11.12669 -11.04433 -10.92105 -10.55648 -10.01962 -9.84567 -9.43222 -9.16081 -8.16210 -7.94761 -7.64981 -6.80496 -6.65401 -4.32693 1.47050 1.61020 2.72300 2.96100 3.05379 3.07476 3.12679 3.17716 3.89800 3.92455 3.99599 4.55292 4.59809 4.98021 5.05457 5.15680 5.32071 5.34155 5.47068 5.55094 5.60535 5.98713 6.09193 6.19760 6.33762 6.42144 6.54507 6.73342 6.82440 6.94431 7.00486 7.16668 7.34812 7.45329 7.50397 7.68514 7.95496 8.06068 8.23517 8.34600 8.56049 8.83006 8.90191 10.16946 Molecular weight = 287.11amu Principal moments of inertia in cm(-1) A = 0.025747 B = 0.003803 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.261239 B = 7360.869546 C = 8134.604856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.188 3.812 4 C -0.307 4.307 5 C 0.173 3.827 6 F -0.139 7.139 7 C -0.242 4.242 8 C 0.275 3.725 9 N -0.660 5.660 10 C 0.015 3.985 11 C -0.119 4.119 12 C -0.140 4.140 13 C 0.100 3.900 14 C -0.458 4.458 15 H 0.077 0.923 16 C 0.072 3.928 17 N -0.797 5.797 18 Si 0.911 3.089 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.266 1.266 22 C -0.206 4.206 23 C -0.112 4.112 24 C -0.240 4.240 25 H 0.097 0.903 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.131 0.869 29 H 0.147 0.853 30 H 0.400 0.600 31 H 0.095 0.905 32 H 0.124 0.876 33 H 0.282 0.718 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.805 -10.367 3.217 13.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.142 3.858 4 C -0.328 4.328 5 C 0.153 3.847 6 F -0.117 7.117 7 C -0.265 4.265 8 C 0.169 3.831 9 N -0.279 5.279 10 C -0.079 4.079 11 C -0.140 4.140 12 C -0.160 4.160 13 C 0.097 3.903 14 C -0.488 4.488 15 H 0.095 0.905 16 C -0.145 4.145 17 N -0.422 5.422 18 Si 0.736 3.264 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.190 1.190 22 C -0.226 4.226 23 C -0.133 4.133 24 C -0.263 4.263 25 H 0.116 0.884 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.149 0.851 29 H 0.164 0.836 30 H 0.235 0.765 31 H 0.113 0.887 32 H 0.141 0.859 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.893 -10.214 3.088 13.273 hybrid contribution 0.056 0.780 -0.251 0.821 sum -7.837 -9.434 2.837 12.589 Atomic orbital electron populations 1.23040 0.78525 1.03587 1.01588 1.86052 1.21308 1.26860 1.88620 1.18177 0.91233 0.83254 0.93184 1.20737 1.00283 0.91083 1.20699 1.17022 0.88556 0.81235 0.97930 1.91486 1.76969 1.49729 1.93526 1.20901 0.91594 1.00189 1.13818 1.17077 0.84180 0.91548 0.90311 1.41654 1.01582 1.19313 1.65321 1.17168 0.96910 0.93254 1.00559 1.20420 0.99732 0.97653 0.96168 1.21016 0.97791 0.95595 1.01616 1.17651 0.91669 0.91597 0.89337 1.19495 0.95063 1.01197 1.33012 0.90465 1.25909 0.94762 0.99162 0.94663 1.69816 1.06423 1.31399 1.34599 0.86313 0.79784 0.79890 0.80418 1.18871 1.20316 1.19046 1.20615 1.02129 0.99167 1.00678 1.20066 0.95957 0.97833 0.99425 1.19756 0.91500 0.96965 1.18109 0.88447 0.92601 0.92563 0.85117 0.83559 0.76528 0.88688 0.85868 0.90745 0.88553 0.89068 0.85158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.03 10.49 -19.44 -0.20 -4.23 16 3 C 0.19 2.74 6.68 -39.25 -0.26 2.47 16 4 C -0.31 -4.50 9.01 -39.31 -0.35 -4.86 16 5 C 0.17 2.94 7.29 -39.47 -0.29 2.65 16 6 F -0.14 -2.42 17.26 2.25 0.04 -2.38 16 7 C -0.24 -4.46 7.83 -39.27 -0.31 -4.77 16 8 C 0.27 4.71 6.05 -83.82 -0.51 4.20 16 9 N -0.66 -11.45 5.42 -8.33 -0.05 -11.50 16 10 C 0.01 0.31 5.91 -83.68 -0.49 -0.19 16 11 C -0.12 -2.72 7.63 -39.77 -0.30 -3.03 16 12 C -0.14 -3.54 8.61 -39.27 -0.34 -3.88 16 13 C 0.10 2.58 5.56 -106.79 -0.59 1.98 16 14 C -0.46 -11.80 9.04 -37.89 -0.34 -12.14 16 15 H 0.08 1.90 7.88 -52.48 -0.41 1.49 16 16 C 0.07 1.78 5.22 -17.34 -0.09 1.69 16 17 N -0.80 -20.29 10.85 55.54 0.60 -19.69 16 18 Si 0.91 18.40 29.58 -169.99 -5.03 13.37 16 19 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 20 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 22 C -0.21 -4.81 9.74 -39.27 -0.38 -5.19 16 23 C -0.11 -2.37 9.89 -39.76 -0.39 -2.76 16 24 C -0.24 -3.64 9.87 -39.21 -0.39 -4.02 16 25 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 27 H 0.06 0.45 7.66 -51.92 -0.40 0.05 16 28 H 0.13 1.60 6.29 -52.49 -0.33 1.27 16 29 H 0.15 3.05 6.27 -52.49 -0.33 2.72 16 30 H 0.40 5.80 8.88 -40.82 -0.36 5.43 16 31 H 0.10 2.09 6.57 -52.49 -0.35 1.75 16 32 H 0.12 3.24 6.18 -52.49 -0.32 2.92 16 33 H 0.28 6.59 8.30 -40.82 -0.34 6.26 16 34 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 35 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 36 H 0.13 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 311.07 15.07 4.69 4.69 Total: -1.00 -27.16 311.07 -7.73 -34.88 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -3.72 Total: 11.47 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: -4.05 Total: -26.60 kcal Atomic # 7 Polarization: -31.75 SS G_CDS: 0.56 Total: -31.19 kcal Atomic # 8 Polarization: -4.03 SS G_CDS: -0.20 Total: -4.23 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.38 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.16 -7.73 -34.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175010621.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.744 kcal (2) G-P(sol) polarization free energy of solvation -27.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds