Wall clock time and date at job start Tue Mar 31 2020 05:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42891 * 109.47305 * 2 1 4 4 C 1.35652 * 117.00207 * 179.97438 * 3 2 1 5 5 N 1.32332 * 119.53305 * 359.97438 * 4 3 2 6 6 C 1.31711 * 121.82948 * 179.97438 * 5 4 3 7 7 C 1.39580 * 120.66049 * 0.02562 * 6 5 4 8 8 C 1.47791 * 120.49329 * 180.02562 * 7 6 5 9 9 C 1.39227 * 120.34409 * 129.99518 * 8 7 6 10 10 C 1.38037 * 119.98116 * 179.97438 * 9 8 7 11 11 C 1.38955 * 120.68356 * 359.97438 * 10 9 8 12 12 C 1.36412 * 120.69794 * 359.97438 * 11 10 9 13 13 C 1.40763 * 119.98541 * 359.74595 * 12 11 10 14 14 C 1.40855 * 120.33390 * 180.27700 * 13 12 11 15 15 H 1.08002 * 120.00141 * 153.39297 * 14 13 12 16 16 C 1.40045 * 120.00021 * 333.39266 * 14 13 12 17 17 N 1.30793 * 119.99858 * 343.94734 * 16 14 13 18 18 Si 1.86796 * 120.00134 * 163.94807 * 16 14 13 19 19 H 1.48505 * 109.47229 * 59.99650 * 18 16 14 20 20 H 1.48498 * 109.47233 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47179 * 300.00302 * 18 16 14 22 22 C 1.40221 * 119.01433 * 359.97438 * 7 6 5 23 23 C 1.38203 * 118.33265 * 359.75386 * 22 7 6 24 24 F 1.35105 * 120.38355 * 180.26319 * 23 22 7 25 25 H 1.08995 * 109.47663 * 300.00334 * 1 2 3 26 26 H 1.09003 * 109.47143 * 60.00274 * 1 2 3 27 27 H 1.09006 * 109.47231 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46658 * 119.99896 * 2 1 3 29 29 H 1.09001 * 109.47300 * 239.99072 * 2 1 3 30 30 H 1.07998 * 119.67185 * 179.97438 * 6 5 4 31 31 H 1.07997 * 120.00434 * 359.97438 * 9 8 7 32 32 H 1.08000 * 119.65715 * 179.97438 * 10 9 8 33 33 H 1.08000 * 119.65537 * 179.97438 * 11 10 9 34 34 H 1.08000 * 120.01054 * 179.97438 * 12 11 10 35 35 H 0.96999 * 119.99591 * 179.97438 * 17 16 14 36 36 H 1.07998 * 120.83244 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3512 1.5249 0.0005 5 7 4.1487 0.4689 0.0015 6 6 5.4603 0.5890 0.0016 7 6 6.0596 1.8496 0.0011 8 6 7.5318 1.9801 0.0006 9 6 8.1639 2.8113 -0.9203 10 6 9.5393 2.9279 -0.9137 11 6 10.3064 2.2230 0.0058 12 6 9.7159 1.4017 0.9211 13 6 8.3151 1.2658 0.9440 14 6 7.6973 0.4243 1.8896 15 1 6.6841 0.6212 2.2074 16 6 8.3970 -0.6679 2.4178 17 7 9.4811 -1.0982 1.8259 18 14 7.7820 -1.5101 3.9675 19 1 6.4143 -2.0393 3.7339 20 1 8.6932 -2.6292 4.3176 21 1 7.7498 -0.5309 5.0836 22 6 5.2442 2.9904 0.0000 23 6 3.8732 2.8166 -0.0057 24 9 3.0487 3.8869 -0.0124 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8901 29 1 1.8934 -0.5140 -0.8899 30 1 6.0783 -0.2967 0.0029 31 1 7.5783 3.3645 -1.6395 32 1 10.0243 3.5738 -1.6307 33 1 11.3814 2.3263 -0.0041 34 1 10.3229 0.8587 1.6304 35 1 9.9659 -1.8544 2.1919 36 1 5.6768 3.9799 -0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243772638.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:19 Heat of formation + Delta-G solvation = -52.257006 kcal Electronic energy + Delta-G solvation = -21866.476449 eV Core-core repulsion = 18422.217106 eV Total energy + Delta-G solvation = -3444.259342 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.106 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.91638 -41.53250 -39.75659 -38.60230 -35.59902 -33.97708 -32.96386 -32.05448 -31.28740 -29.40772 -27.21311 -25.51023 -24.42956 -23.41940 -22.58780 -21.72604 -19.64820 -19.16912 -18.50148 -18.14337 -17.60701 -17.10383 -16.43020 -16.37792 -16.07087 -15.65030 -15.30489 -14.94480 -14.52410 -14.42322 -14.22776 -14.08049 -13.60907 -13.48735 -13.28268 -13.20967 -12.99139 -12.81558 -12.57651 -12.46706 -12.18139 -11.76454 -11.47674 -11.44219 -11.07218 -10.84788 -10.73426 -9.66776 -9.30863 -8.93424 -8.62216 -6.32699 -0.09663 0.03567 1.00416 1.16066 1.38359 1.46486 1.53278 1.87995 2.18234 2.61618 2.74457 3.06332 3.30288 3.67170 3.75367 3.99354 4.07495 4.13757 4.25221 4.46027 4.47463 4.51897 4.65115 4.80824 4.83438 4.94127 4.96715 5.09433 5.17898 5.21955 5.30749 5.43296 5.49117 5.67547 6.00970 6.07571 6.16549 6.21918 6.35053 6.65874 6.72247 6.90933 7.01675 8.28525 Molecular weight = 287.11amu Principal moments of inertia in cm(-1) A = 0.014009 B = 0.005942 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.225046 B = 4710.822988 C = 6272.568412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.059 3.941 3 O -0.315 6.315 4 C 0.264 3.736 5 N -0.519 5.519 6 C 0.143 3.857 7 C -0.046 4.046 8 C -0.193 4.193 9 C -0.072 4.072 10 C -0.239 4.239 11 C -0.103 4.103 12 C -0.182 4.182 13 C 0.108 3.892 14 C -0.476 4.476 15 H 0.072 0.928 16 C 0.047 3.953 17 N -0.812 5.812 18 Si 0.963 3.037 19 H -0.263 1.263 20 H -0.266 1.266 21 H -0.264 1.264 22 C -0.081 4.081 23 C 0.024 3.976 24 F -0.131 7.131 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.102 0.898 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.162 0.838 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.110 0.890 34 H 0.103 0.897 35 H 0.290 0.710 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.215 1.384 -2.025 9.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.016 4.016 3 O -0.223 6.223 4 C 0.084 3.916 5 N -0.242 5.242 6 C -0.013 4.013 7 C -0.048 4.048 8 C -0.196 4.196 9 C -0.090 4.090 10 C -0.258 4.258 11 C -0.121 4.121 12 C -0.201 4.201 13 C 0.105 3.895 14 C -0.504 4.504 15 H 0.090 0.910 16 C -0.170 4.170 17 N -0.437 5.437 18 Si 0.785 3.215 19 H -0.188 1.188 20 H -0.190 1.190 21 H -0.189 1.189 22 C -0.107 4.107 23 C 0.002 3.998 24 F -0.109 7.109 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.121 0.879 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.179 0.821 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.128 0.872 34 H 0.121 0.879 35 H 0.101 0.899 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -9.688 0.574 -2.021 9.913 hybrid contribution 0.466 0.207 0.727 0.888 sum -9.222 0.781 -1.293 9.345 Atomic orbital electron populations 1.21824 0.90435 1.04388 1.03413 1.22854 0.96593 0.79875 1.02298 1.86217 1.15541 1.32372 1.88175 1.19953 0.85387 0.88855 0.97402 1.67373 1.06745 1.31228 1.18837 1.22769 0.87842 0.98061 0.92648 1.19472 0.94123 0.92210 0.99001 1.18528 0.89722 1.09253 1.02062 1.20899 0.94643 0.96555 0.96904 1.20668 0.93677 1.07144 1.04272 1.20796 0.98923 0.96579 0.95844 1.21043 0.95256 1.01947 1.01858 1.17790 0.91967 0.89653 0.90054 1.19569 1.00632 1.09153 1.21093 0.90965 1.26533 0.94085 0.96987 0.99413 1.69816 1.15432 1.21622 1.36797 0.85524 0.79361 0.78204 0.78459 1.18779 1.18973 1.18899 1.21775 0.89524 1.01259 0.98130 1.17499 0.88318 0.81577 1.12437 1.91468 1.71532 1.53332 1.94601 0.91612 0.91368 0.87914 0.92214 0.91748 0.82105 0.86442 0.86256 0.87239 0.87920 0.89893 0.81611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 10.28 71.98 0.74 -1.85 16 2 C 0.06 1.53 6.02 71.98 0.43 1.96 16 3 O -0.31 -10.40 9.98 -89.67 -0.89 -11.30 16 4 C 0.26 9.66 7.50 84.88 0.64 10.30 16 5 N -0.52 -19.89 9.18 -307.51 -2.82 -22.72 16 6 C 0.14 5.80 9.20 85.03 0.78 6.58 16 7 C -0.05 -1.84 4.92 -19.94 -0.10 -1.94 16 8 C -0.19 -8.54 5.54 -19.60 -0.11 -8.64 16 9 C -0.07 -2.87 9.53 22.46 0.21 -2.66 16 10 C -0.24 -9.42 10.03 22.39 0.22 -9.20 16 11 C -0.10 -4.41 9.96 22.02 0.22 -4.19 16 12 C -0.18 -8.85 8.62 22.46 0.19 -8.65 16 13 C 0.11 5.31 5.56 -21.11 -0.12 5.19 16 14 C -0.48 -23.44 7.14 23.35 0.17 -23.28 16 15 H 0.07 3.57 6.66 -2.91 -0.02 3.55 16 16 C 0.05 2.20 5.16 85.29 0.44 2.64 16 17 N -0.81 -39.37 10.99 21.85 0.24 -39.13 16 18 Si 0.96 36.76 29.59 68.60 2.03 38.79 16 19 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 20 H -0.27 -9.56 7.11 99.48 0.71 -8.86 16 21 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 22 C -0.08 -2.88 9.67 22.74 0.22 -2.66 16 23 C 0.02 0.85 7.34 22.52 0.17 1.01 16 24 F -0.13 -4.45 17.12 44.97 0.77 -3.68 16 25 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.06 1.62 8.10 -2.38 -0.02 1.60 16 29 H 0.06 1.68 8.10 -2.39 -0.02 1.66 16 30 H 0.16 6.89 7.33 -2.91 -0.02 6.87 16 31 H 0.12 4.01 8.05 -2.91 -0.02 3.98 16 32 H 0.12 3.97 8.06 -2.91 -0.02 3.95 16 33 H 0.11 4.11 8.06 -2.91 -0.02 4.09 16 34 H 0.10 5.24 6.24 -2.91 -0.02 5.22 16 35 H 0.29 12.84 8.29 -92.71 -0.77 12.07 16 36 H 0.17 5.13 8.06 -2.91 -0.02 5.11 16 Total: -1.00 -53.78 316.05 4.54 -49.24 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 1.10 Total: 24.19 kcal Atomic # 6 Polarization: -39.50 SS G_CDS: 4.11 Total: -35.39 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: -2.58 Total: -61.85 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: -0.89 Total: -11.30 kcal Atomic # 9 Polarization: -4.45 SS G_CDS: 0.77 Total: -3.68 kcal Atomic # 14 Polarization: 36.76 SS G_CDS: 2.03 Total: 38.79 kcal Total: -53.78 4.54 -49.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243772638.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.018 kcal (2) G-P(sol) polarization free energy of solvation -53.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds