Wall clock time and date at job start Tue Mar 31 2020 05:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47158 * 2 1 4 4 C 1.34868 * 119.50266 * 90.00271 * 3 2 1 5 5 C 1.37991 * 120.43386 * 180.02562 * 4 3 2 6 6 C 1.47776 * 120.25356 * 180.02562 * 5 4 3 7 7 C 1.39155 * 120.32657 * 74.68962 * 6 5 4 8 8 C 1.38289 * 119.95235 * 179.81578 * 7 6 5 9 9 F 1.35099 * 119.68835 * 180.23946 * 8 7 6 10 10 C 1.39269 * 120.62272 * 0.44802 * 8 7 6 11 11 C 1.36313 * 120.66922 * 359.79332 * 10 8 7 12 12 C 1.40797 * 120.02001 * 359.97438 * 11 10 8 13 13 C 1.40790 * 120.30866 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00215 * 205.16036 * 13 12 11 15 15 C 1.39976 * 119.99769 * 25.15555 * 13 12 11 16 16 N 1.30843 * 119.99763 * 17.44905 * 15 13 12 17 17 Si 1.86797 * 119.99827 * 197.44881 * 15 13 12 18 18 H 1.48506 * 109.47402 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47169 * 120.00290 * 17 15 13 20 20 H 1.48494 * 109.47252 * 239.99757 * 17 15 13 21 21 C 1.41457 * 119.49888 * 359.97438 * 5 4 3 22 22 C 1.36047 * 119.05408 * 0.02562 * 21 5 4 23 23 C 1.34550 * 119.49683 * 270.26548 * 3 2 1 24 24 O 1.22009 * 119.75961 * 359.97438 * 23 3 2 25 25 H 1.08999 * 109.47426 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46825 * 300.00522 * 1 2 3 27 27 H 1.09002 * 109.47524 * 59.99956 * 1 2 3 28 28 H 1.08996 * 109.47131 * 239.99806 * 2 1 3 29 29 H 1.08998 * 109.47068 * 119.99842 * 2 1 3 30 30 H 1.07999 * 119.78363 * 359.97208 * 4 3 2 31 31 H 1.07998 * 120.02421 * 0.03151 * 7 6 5 32 32 H 1.08000 * 119.66362 * 179.76387 * 10 8 7 33 33 H 1.07994 * 119.99027 * 179.97438 * 11 10 8 34 34 H 0.97006 * 119.99581 * 180.02562 * 16 15 13 35 35 H 1.08004 * 120.47475 * 180.02562 * 21 5 4 36 36 H 1.07994 * 120.24335 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2398 2.0074 1.1738 5 6 2.6992 3.3084 1.1962 6 6 2.9410 3.9905 2.4847 7 6 4.0565 3.6683 3.2518 8 6 4.2773 4.3141 4.4545 9 9 5.3645 4.0006 5.1926 10 6 3.3872 5.2817 4.9140 11 6 2.2839 5.6135 4.1855 12 6 2.0347 4.9768 2.9547 13 6 0.8968 5.3144 2.1976 14 1 0.4782 4.6002 1.5040 15 6 0.3079 6.5759 2.3438 16 7 0.9791 7.5503 2.9024 17 14 -1.4359 6.8680 1.7414 18 1 -1.9729 5.6147 1.1528 19 1 -2.2906 7.2842 2.8824 20 1 -1.4311 7.9371 0.7109 21 6 2.9380 3.9839 -0.0235 22 6 2.7077 3.3326 -1.1955 23 6 2.2341 2.0076 -1.1711 24 8 2.0220 1.4211 -2.2197 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.0555 1.4875 2.1023 31 1 4.7511 2.9168 2.9064 32 1 3.5727 5.7737 5.8574 33 1 1.6007 6.3651 4.5525 34 1 0.5708 8.4244 3.0041 35 1 3.2980 5.0022 -0.0243 36 1 2.8831 3.8301 -2.1378 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243834412.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:31 Heat of formation + Delta-G solvation = -51.896353 kcal Electronic energy + Delta-G solvation = -22111.058017 eV Core-core repulsion = 18666.814313 eV Total energy + Delta-G solvation = -3444.243703 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.106 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.25272 -42.26688 -39.48880 -37.73496 -36.11482 -35.48200 -32.56264 -31.73055 -31.27067 -29.36867 -26.87805 -25.59997 -24.71207 -23.25488 -22.91974 -21.74379 -19.26928 -18.50863 -18.21348 -17.69413 -17.27469 -16.94892 -16.50266 -16.34049 -16.00300 -15.80838 -15.29588 -14.99102 -14.79059 -14.43638 -14.03191 -13.98330 -13.76807 -13.38207 -13.31189 -13.04105 -12.84770 -12.79673 -12.60178 -12.32844 -12.16782 -12.07995 -11.70529 -11.34973 -11.02939 -10.94354 -10.87969 -9.50076 -9.22817 -8.77245 -8.60402 -6.32289 0.00405 0.70428 0.88428 1.04346 1.41134 1.46519 1.52678 1.78159 2.18324 2.62821 2.73903 3.56275 3.69028 3.84392 3.98580 4.11932 4.16201 4.21248 4.31039 4.35750 4.40368 4.45531 4.65284 4.80345 4.90440 5.06523 5.11118 5.19882 5.21879 5.23443 5.30279 5.50944 5.59925 5.63584 5.83171 5.95719 6.06577 6.17026 6.28375 6.60959 6.87776 6.95380 7.05248 8.24820 Molecular weight = 287.11amu Principal moments of inertia in cm(-1) A = 0.011276 B = 0.007153 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.540965 B = 3913.249427 C = 5561.761636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.081 3.919 3 N -0.483 5.483 4 C 0.137 3.863 5 C -0.113 4.113 6 C -0.146 4.146 7 C -0.092 4.092 8 C -0.060 4.060 9 F -0.172 7.172 10 C -0.127 4.127 11 C -0.157 4.157 12 C 0.101 3.899 13 C -0.456 4.456 14 H 0.079 0.921 15 C 0.044 3.956 16 N -0.809 5.809 17 Si 0.965 3.035 18 H -0.261 1.261 19 H -0.263 1.263 20 H -0.270 1.270 21 C 0.020 3.980 22 C -0.274 4.274 23 C 0.500 3.500 24 O -0.608 6.608 25 H 0.101 0.899 26 H 0.064 0.936 27 H 0.036 0.964 28 H 0.090 0.910 29 H 0.127 0.873 30 H 0.189 0.811 31 H 0.124 0.876 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.292 0.708 35 H 0.129 0.871 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.656 -8.148 -0.536 8.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.039 4.039 3 N -0.191 5.191 4 C 0.009 3.991 5 C -0.117 4.117 6 C -0.148 4.148 7 C -0.111 4.111 8 C -0.080 4.080 9 F -0.152 7.152 10 C -0.146 4.146 11 C -0.176 4.176 12 C 0.098 3.902 13 C -0.484 4.484 14 H 0.097 0.903 15 C -0.174 4.174 16 N -0.434 5.434 17 Si 0.787 3.213 18 H -0.185 1.185 19 H -0.188 1.188 20 H -0.195 1.195 21 C -0.002 4.002 22 C -0.295 4.295 23 C 0.306 3.694 24 O -0.497 6.497 25 H 0.120 0.880 26 H 0.083 0.917 27 H 0.055 0.945 28 H 0.108 0.892 29 H 0.145 0.855 30 H 0.205 0.795 31 H 0.142 0.858 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.103 0.897 35 H 0.147 0.853 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.782 -8.335 -1.107 8.595 hybrid contribution -0.368 0.831 0.004 0.909 sum -2.150 -7.503 -1.103 7.883 Atomic orbital electron populations 1.22092 0.93787 1.04313 1.01872 1.22238 0.96310 0.79374 1.06019 1.45284 1.52236 1.15447 1.06093 1.22602 0.93626 0.93194 0.89692 1.18125 1.07785 0.93002 0.92836 1.18045 0.96877 1.05202 0.94690 1.20755 0.97755 0.99701 0.92927 1.17324 0.89380 1.06071 0.95203 1.91292 1.53645 1.93034 1.77203 1.20639 0.95705 0.97895 1.00398 1.20883 0.98309 1.03170 0.95238 1.17871 0.91401 0.89993 0.90910 1.19611 1.09483 0.99033 1.20295 0.90285 1.26615 1.02231 0.95202 0.93313 1.69841 1.38023 1.02833 1.32688 0.85382 0.77784 0.79195 0.78923 1.18497 1.18774 1.19518 1.21658 0.88417 0.98958 0.91152 1.21960 1.12459 0.95062 1.00034 1.17259 0.80717 0.88542 0.82927 1.90839 1.58651 1.68806 1.31380 0.88004 0.91735 0.94457 0.89159 0.85539 0.79451 0.85775 0.86931 0.86776 0.89745 0.85256 0.83379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 10.23 71.98 0.74 -2.56 16 2 C 0.08 1.72 6.02 86.38 0.52 2.24 16 3 N -0.48 -14.04 2.56 -649.36 -1.66 -15.70 16 4 C 0.14 3.96 10.04 84.17 0.84 4.80 16 5 C -0.11 -3.97 4.10 -20.02 -0.08 -4.05 16 6 C -0.15 -5.88 5.35 -19.61 -0.10 -5.98 16 7 C -0.09 -3.62 9.75 22.50 0.22 -3.40 16 8 C -0.06 -2.52 7.30 22.53 0.16 -2.36 16 9 F -0.17 -7.04 17.26 44.97 0.78 -6.27 16 10 C -0.13 -5.50 9.94 22.07 0.22 -5.28 16 11 C -0.16 -7.25 8.63 22.45 0.19 -7.06 16 12 C 0.10 4.63 5.59 -21.11 -0.12 4.51 16 13 C -0.46 -20.96 8.36 23.32 0.19 -20.76 16 14 H 0.08 3.60 7.27 -2.91 -0.02 3.58 16 15 C 0.04 1.96 5.14 85.26 0.44 2.39 16 16 N -0.81 -37.56 10.97 21.83 0.24 -37.32 16 17 Si 0.97 34.87 29.59 68.60 2.03 36.90 16 18 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 19 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 20 H -0.27 -9.62 7.11 99.48 0.71 -8.92 16 21 C 0.02 0.72 9.69 22.55 0.22 0.93 16 22 C -0.27 -9.48 9.97 22.37 0.22 -9.26 16 23 C 0.50 17.93 7.40 84.89 0.63 18.56 16 24 O -0.61 -24.99 16.59 -5.34 -0.09 -25.08 16 25 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.09 2.10 7.37 -2.39 -0.02 2.08 16 29 H 0.13 1.75 8.00 -2.39 -0.02 1.73 16 30 H 0.19 4.28 8.02 -2.91 -0.02 4.25 16 31 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 32 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 33 H 0.11 5.51 6.18 -2.91 -0.02 5.49 16 34 H 0.29 12.29 8.30 -92.70 -0.77 11.52 16 35 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 36 H 0.15 4.76 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -57.32 317.59 6.69 -50.63 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 1.10 Total: 24.09 kcal Atomic # 6 Polarization: -31.56 SS G_CDS: 4.30 Total: -27.26 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: -1.42 Total: -53.02 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.09 Total: -25.08 kcal Atomic # 9 Polarization: -7.04 SS G_CDS: 0.78 Total: -6.27 kcal Atomic # 14 Polarization: 34.87 SS G_CDS: 2.03 Total: 36.90 kcal Total: -57.32 6.69 -50.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243834412.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.269 kcal (2) G-P(sol) polarization free energy of solvation -57.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds