Wall clock time and date at job start Tue Mar 31 2020 05:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38036 * 126.29302 * 2 1 4 4 C 1.47436 * 126.41450 * 359.97438 * 3 2 1 5 5 O 1.21602 * 120.00091 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99867 * 179.72839 * 4 3 2 7 7 C 1.46506 * 119.99968 * 180.02562 * 6 4 3 8 8 C 1.52993 * 109.47171 * 84.99494 * 7 6 4 9 9 F 1.39895 * 109.47512 * 300.00307 * 8 7 6 10 10 C 1.52998 * 109.46894 * 205.00095 * 7 6 4 11 11 F 1.39900 * 109.47546 * 59.99549 * 10 7 6 12 12 C 1.41286 * 107.17192 * 180.24871 * 3 2 1 13 13 N 1.30448 * 108.02337 * 359.61207 * 12 3 2 14 14 N 1.34259 * 126.28729 * 180.02562 * 2 1 3 15 15 C 1.46503 * 125.75762 * 359.97438 * 14 2 1 16 16 C 1.50696 * 109.46974 * 90.00112 * 15 14 2 17 17 H 1.08001 * 120.00163 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99873 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99784 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99944 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47036 * 89.99828 * 20 18 16 22 22 H 1.48501 * 109.47338 * 209.99683 * 20 18 16 23 23 H 1.48499 * 109.47125 * 329.99973 * 20 18 16 24 24 H 1.09000 * 109.47568 * 89.97502 * 1 2 3 25 25 H 1.09002 * 109.47528 * 209.97528 * 1 2 3 26 26 H 1.08998 * 109.46953 * 329.97793 * 1 2 3 27 27 H 0.97004 * 120.00018 * 359.97438 * 6 4 3 28 28 H 1.09000 * 109.46738 * 324.99609 * 7 6 4 29 29 H 1.09000 * 109.47196 * 60.00395 * 8 7 6 30 30 H 1.09002 * 109.46922 * 180.02562 * 8 7 6 31 31 H 1.09002 * 109.46749 * 180.02562 * 10 7 6 32 32 H 1.09000 * 109.47031 * 299.99334 * 10 7 6 33 33 H 1.08000 * 125.99145 * 179.77305 * 12 3 2 34 34 H 1.09004 * 109.46911 * 210.00324 * 15 14 2 35 35 H 1.09002 * 109.46643 * 329.99944 * 15 14 2 36 36 H 0.97003 * 119.99565 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0015 6 7 2.7999 3.5106 0.0051 7 6 2.3644 4.9095 0.0051 8 6 2.0862 5.3569 1.4414 9 9 1.0809 4.5555 1.9931 10 6 3.4639 5.7858 -0.5983 11 9 3.7184 5.3766 -1.9116 12 6 3.6589 0.6498 -0.0059 13 7 3.6340 -0.6545 -0.0007 14 7 2.3016 -1.0822 -0.0005 15 6 1.8500 -2.4759 -0.0006 16 6 1.6946 -2.9535 -1.4214 17 1 1.9103 -2.2855 -2.2423 18 6 1.2772 -4.2431 -1.6734 19 7 1.1411 -4.6597 -2.9134 20 14 0.9035 -5.3981 -0.2537 21 1 -0.5276 -5.2730 0.1227 22 1 1.1865 -6.7965 -0.6655 23 1 1.7543 -5.0430 0.9105 24 1 -0.3634 0.0004 -1.0276 25 1 -0.3634 -0.8902 0.5134 26 1 -0.3633 0.8898 0.5142 27 1 3.7462 3.2972 0.0098 28 1 1.4554 5.0069 -0.5884 29 1 2.9952 5.2594 2.0350 30 1 1.7617 6.3975 1.4414 31 1 3.1401 6.8266 -0.5978 32 1 4.3729 5.6883 -0.0047 33 1 4.5448 1.2675 -0.0108 34 1 2.5848 -3.0960 0.5130 35 1 0.8915 -2.5472 0.5136 36 1 0.8471 -5.5669 -3.0907 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891262948.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:12 Heat of formation + Delta-G solvation = -72.550445 kcal Electronic energy + Delta-G solvation = -22706.435009 eV Core-core repulsion = 18862.819204 eV Total energy + Delta-G solvation = -3843.615806 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -47.96319 -47.60634 -40.84840 -38.89582 -35.49940 -33.90759 -32.26189 -31.51719 -30.90022 -27.78715 -26.70713 -26.27704 -23.40613 -22.52080 -21.47120 -20.04098 -19.02669 -17.35615 -17.20749 -17.10464 -16.61233 -16.07657 -15.74737 -15.29395 -15.03555 -14.90915 -14.77062 -14.34889 -14.09922 -13.93467 -13.28920 -13.20825 -12.68178 -12.54381 -12.26626 -12.10791 -11.88301 -11.58584 -11.54682 -11.39301 -11.20828 -11.17481 -10.83116 -10.39430 -10.22305 -9.78463 -9.43781 -9.09133 -8.83934 -8.63920 -7.96104 -6.31843 -4.36511 2.14210 2.73663 2.96886 3.11757 3.18993 3.20453 3.39346 3.78239 3.85856 4.16711 4.34175 4.40508 4.59075 4.65506 4.75503 4.91344 5.03382 5.13181 5.22319 5.35749 5.47751 5.60746 5.70128 5.86337 6.07019 6.27715 6.38299 6.45635 6.56099 6.61142 7.02240 7.19473 7.56978 7.63362 8.21067 8.28576 8.57514 8.71606 9.22027 10.80435 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.028871 B = 0.003780 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.597247 B = 7404.823172 C = 7760.302238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.170 3.830 3 C -0.328 4.328 4 C 0.608 3.392 5 O -0.540 6.540 6 N -0.730 5.730 7 C 0.083 3.917 8 C 0.055 3.945 9 F -0.197 7.197 10 C 0.060 3.940 11 F -0.205 7.205 12 C 0.061 3.939 13 N -0.292 5.292 14 N -0.314 5.314 15 C 0.225 3.775 16 C -0.545 4.545 17 H 0.082 0.918 18 C 0.081 3.919 19 N -0.883 5.883 20 Si 0.873 3.127 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.263 1.263 24 H 0.087 0.913 25 H 0.070 0.930 26 H 0.096 0.904 27 H 0.400 0.600 28 H 0.110 0.890 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.177 0.823 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.032 20.270 8.956 22.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.033 3.967 3 C -0.343 4.343 4 C 0.398 3.602 5 O -0.417 6.417 6 N -0.383 5.383 7 C -0.024 4.024 8 C -0.002 4.002 9 F -0.178 7.178 10 C 0.004 3.996 11 F -0.186 7.186 12 C -0.126 4.126 13 N -0.112 5.112 14 N -0.090 5.090 15 C 0.106 3.894 16 C -0.583 4.583 17 H 0.100 0.900 18 C -0.123 4.123 19 N -0.519 5.519 20 Si 0.698 3.302 21 H -0.195 1.195 22 H -0.204 1.204 23 H -0.188 1.188 24 H 0.105 0.895 25 H 0.089 0.911 26 H 0.114 0.886 27 H 0.235 0.765 28 H 0.128 0.872 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.194 0.806 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.782 18.988 8.812 21.272 hybrid contribution -0.048 -0.172 0.431 0.467 sum 3.734 18.816 9.244 21.294 Atomic orbital electron populations 1.20601 0.86681 1.03733 1.04227 1.21464 0.94977 0.86378 0.93858 1.19611 0.93110 0.92394 1.29228 1.17251 0.85019 0.83775 0.74137 1.90714 1.16453 1.84138 1.50405 1.45603 1.10042 1.04192 1.78505 1.22131 1.00117 0.83035 0.97122 1.22254 0.90299 0.94093 0.93542 1.92872 1.62601 1.75912 1.86435 1.22122 0.99027 0.98841 0.79592 1.92839 1.95407 1.92319 1.38029 1.23727 0.96377 0.92554 0.99981 1.77139 0.98098 1.12365 1.23591 1.48894 1.02749 1.07523 1.49868 1.20153 0.95719 0.73319 1.00211 1.21095 1.48040 0.99189 0.90015 0.90023 1.24790 0.94284 0.97401 0.95870 1.69867 1.45161 1.18243 1.18673 0.86903 0.79538 0.81028 0.82703 1.19481 1.20358 1.18786 0.89473 0.91125 0.88568 0.76529 0.87236 0.90613 0.90029 0.89018 0.89867 0.80624 0.92724 0.93413 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.71 9.57 36.01 0.34 -1.37 16 2 C 0.17 3.47 7.01 -81.61 -0.57 2.89 16 3 C -0.33 -6.02 6.13 -105.07 -0.64 -6.66 16 4 C 0.61 10.08 7.35 -12.52 -0.09 9.99 16 5 O -0.54 -10.30 13.40 5.28 0.07 -10.23 16 6 N -0.73 -8.61 4.98 -54.88 -0.27 -8.89 16 7 C 0.08 0.75 2.81 -67.93 -0.19 0.56 16 8 C 0.05 0.43 7.19 37.15 0.27 0.70 16 9 F -0.20 -2.67 15.71 2.25 0.04 -2.64 16 10 C 0.06 0.35 7.05 37.16 0.26 0.61 16 11 F -0.20 -2.07 17.28 2.25 0.04 -2.03 16 12 C 0.06 1.05 11.50 -16.98 -0.20 0.86 16 13 N -0.29 -6.23 12.50 30.86 0.39 -5.84 16 14 N -0.31 -7.02 3.56 -57.77 -0.21 -7.22 16 15 C 0.22 5.29 5.03 -5.19 -0.03 5.27 16 16 C -0.55 -15.09 9.94 -34.44 -0.34 -15.43 16 17 H 0.08 2.56 8.06 -52.49 -0.42 2.13 16 18 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 19 N -0.88 -26.05 13.96 55.43 0.77 -25.27 16 20 Si 0.87 19.89 27.47 -169.99 -4.67 15.23 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 24 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 25 H 0.07 1.20 7.05 -51.93 -0.37 0.83 16 26 H 0.10 1.68 6.50 -51.93 -0.34 1.34 16 27 H 0.40 3.74 7.56 -40.82 -0.31 3.43 16 28 H 0.11 1.24 7.58 -51.93 -0.39 0.84 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.18 2.14 7.50 -52.49 -0.39 1.75 16 34 H 0.05 1.29 7.20 -51.93 -0.37 0.91 16 35 H 0.05 1.04 6.44 -51.93 -0.33 0.70 16 36 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 315.57 15.07 4.76 4.76 Total: -1.00 -34.98 315.57 -4.59 -39.56 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -4.21 Total: 3.02 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -1.29 Total: -0.44 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.68 Total: -47.23 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.07 Total: -10.23 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.07 Total: -4.67 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.67 Total: 15.23 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.98 -4.59 -39.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891262948.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.988 kcal (2) G-P(sol) polarization free energy of solvation -34.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds