Wall clock time and date at job start Tue Mar 31 2020 05:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38036 * 126.29302 * 2 1 4 4 C 1.47436 * 126.41450 * 359.97438 * 3 2 1 5 5 O 1.21602 * 120.00091 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99867 * 179.72839 * 4 3 2 7 7 C 1.46506 * 119.99968 * 180.02562 * 6 4 3 8 8 C 1.52993 * 109.47171 * 84.99494 * 7 6 4 9 9 F 1.39895 * 109.47512 * 300.00307 * 8 7 6 10 10 C 1.52998 * 109.46894 * 205.00095 * 7 6 4 11 11 F 1.39900 * 109.47546 * 59.99549 * 10 7 6 12 12 C 1.41286 * 107.17192 * 180.24871 * 3 2 1 13 13 N 1.30448 * 108.02337 * 359.61207 * 12 3 2 14 14 N 1.34259 * 126.28729 * 180.02562 * 2 1 3 15 15 C 1.46503 * 125.75762 * 359.97438 * 14 2 1 16 16 C 1.50696 * 109.46974 * 90.00112 * 15 14 2 17 17 H 1.08001 * 120.00163 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99873 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99784 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99944 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47036 * 89.99828 * 20 18 16 22 22 H 1.48501 * 109.47338 * 209.99683 * 20 18 16 23 23 H 1.48499 * 109.47125 * 329.99973 * 20 18 16 24 24 H 1.09000 * 109.47568 * 89.97502 * 1 2 3 25 25 H 1.09002 * 109.47528 * 209.97528 * 1 2 3 26 26 H 1.08998 * 109.46953 * 329.97793 * 1 2 3 27 27 H 0.97004 * 120.00018 * 359.97438 * 6 4 3 28 28 H 1.09000 * 109.46738 * 324.99609 * 7 6 4 29 29 H 1.09000 * 109.47196 * 60.00395 * 8 7 6 30 30 H 1.09002 * 109.46922 * 180.02562 * 8 7 6 31 31 H 1.09002 * 109.46749 * 180.02562 * 10 7 6 32 32 H 1.09000 * 109.47031 * 299.99334 * 10 7 6 33 33 H 1.08000 * 125.99145 * 179.77305 * 12 3 2 34 34 H 1.09004 * 109.46911 * 210.00324 * 15 14 2 35 35 H 1.09002 * 109.46643 * 329.99944 * 15 14 2 36 36 H 0.97003 * 119.99565 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0015 6 7 2.7999 3.5106 0.0051 7 6 2.3644 4.9095 0.0051 8 6 2.0862 5.3569 1.4414 9 9 1.0809 4.5555 1.9931 10 6 3.4639 5.7858 -0.5983 11 9 3.7184 5.3766 -1.9116 12 6 3.6589 0.6498 -0.0059 13 7 3.6340 -0.6545 -0.0007 14 7 2.3016 -1.0822 -0.0005 15 6 1.8500 -2.4759 -0.0006 16 6 1.6946 -2.9535 -1.4214 17 1 1.9103 -2.2855 -2.2423 18 6 1.2772 -4.2431 -1.6734 19 7 1.1411 -4.6597 -2.9134 20 14 0.9035 -5.3981 -0.2537 21 1 -0.5276 -5.2730 0.1227 22 1 1.1865 -6.7965 -0.6655 23 1 1.7543 -5.0430 0.9105 24 1 -0.3634 0.0004 -1.0276 25 1 -0.3634 -0.8902 0.5134 26 1 -0.3633 0.8898 0.5142 27 1 3.7462 3.2972 0.0098 28 1 1.4554 5.0069 -0.5884 29 1 2.9952 5.2594 2.0350 30 1 1.7617 6.3975 1.4414 31 1 3.1401 6.8266 -0.5978 32 1 4.3729 5.6883 -0.0047 33 1 4.5448 1.2675 -0.0108 34 1 2.5848 -3.0960 0.5130 35 1 0.8915 -2.5472 0.5136 36 1 0.8471 -5.5669 -3.0907 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891262948.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:12 Heat of formation + Delta-G solvation = -98.575675 kcal Electronic energy + Delta-G solvation = -22707.563548 eV Core-core repulsion = 18862.819204 eV Total energy + Delta-G solvation = -3844.744344 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.60185 -48.41975 -42.34726 -40.12948 -36.49323 -35.77766 -34.05592 -32.92239 -32.08460 -29.53647 -28.18484 -26.79974 -25.11193 -23.86241 -22.45699 -21.34159 -20.54377 -19.29804 -18.63913 -17.89107 -17.35924 -17.04154 -16.60133 -16.49396 -16.35018 -16.01088 -15.94775 -15.57313 -15.43654 -15.18899 -14.78820 -14.44728 -14.24777 -14.12331 -13.81692 -13.72833 -13.14909 -13.02454 -12.68729 -12.56828 -12.24962 -12.15327 -11.91539 -11.86150 -11.81809 -11.73321 -10.92854 -10.79357 -10.28275 -10.12493 -9.46664 -8.44182 -6.56523 0.64415 1.30336 1.33272 1.34680 1.44820 1.60170 2.23872 2.24594 2.53275 2.88150 3.20447 3.65958 3.70039 3.74601 3.91433 4.09415 4.17450 4.19455 4.24845 4.32224 4.37336 4.47573 4.60838 4.67009 4.71870 4.80333 4.92949 5.02825 5.11356 5.16426 5.47413 5.61249 5.81799 6.19373 6.46338 6.56252 6.77868 7.07467 7.36234 8.72470 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.028871 B = 0.003780 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.597247 B = 7404.823172 C = 7760.302238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.146 3.854 3 C -0.331 4.331 4 C 0.605 3.395 5 O -0.571 6.571 6 N -0.715 5.715 7 C 0.078 3.922 8 C 0.046 3.954 9 F -0.233 7.233 10 C 0.060 3.940 11 F -0.231 7.231 12 C 0.081 3.919 13 N -0.332 5.332 14 N -0.338 5.338 15 C 0.234 3.766 16 C -0.555 4.555 17 H 0.025 0.975 18 C 0.023 3.977 19 N -0.935 5.935 20 Si 0.950 3.050 21 H -0.252 1.252 22 H -0.276 1.276 23 H -0.242 1.242 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.102 0.898 27 H 0.414 0.586 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.118 0.882 31 H 0.127 0.873 32 H 0.118 0.882 33 H 0.228 0.772 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.124 21.972 11.284 25.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.010 3.990 3 C -0.346 4.346 4 C 0.394 3.606 5 O -0.451 6.451 6 N -0.368 5.368 7 C -0.028 4.028 8 C -0.010 4.010 9 F -0.214 7.214 10 C 0.006 3.994 11 F -0.212 7.212 12 C -0.106 4.106 13 N -0.152 5.152 14 N -0.115 5.115 15 C 0.114 3.886 16 C -0.593 4.593 17 H 0.043 0.957 18 C -0.177 4.177 19 N -0.573 5.573 20 Si 0.771 3.229 21 H -0.176 1.176 22 H -0.201 1.201 23 H -0.165 1.165 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.120 0.880 27 H 0.251 0.749 28 H 0.099 0.901 29 H 0.123 0.877 30 H 0.136 0.864 31 H 0.145 0.855 32 H 0.136 0.864 33 H 0.244 0.756 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.914 20.752 11.147 24.063 hybrid contribution -0.314 -0.483 -0.386 0.693 sum 4.600 20.269 10.761 23.405 Atomic orbital electron populations 1.20576 0.85825 1.04503 1.03709 1.21970 0.95970 0.86780 0.94234 1.19994 0.93428 0.93171 1.27992 1.17120 0.85212 0.83914 0.74341 1.90698 1.17870 1.84502 1.52012 1.45484 1.10029 1.04752 1.76511 1.22372 1.00439 0.81762 0.98242 1.22629 0.90634 0.95261 0.92430 1.92801 1.64442 1.77187 1.86965 1.22431 0.99333 0.99544 0.78141 1.92791 1.95519 1.92685 1.40242 1.24511 0.97624 0.91627 0.96864 1.77077 0.97964 1.14439 1.25690 1.48761 1.03502 1.07276 1.51979 1.19896 0.96802 0.74529 0.97386 1.21189 1.48281 0.98878 0.90929 0.95692 1.25831 0.93550 0.99207 0.99100 1.70029 1.46570 1.19116 1.21620 0.85686 0.80459 0.77793 0.78977 1.17635 1.20140 1.16541 0.90565 0.90080 0.87977 0.74918 0.90069 0.87674 0.86359 0.85504 0.86391 0.75596 0.92454 0.91209 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.27 9.57 71.24 0.68 -2.59 16 2 C 0.15 6.03 7.01 42.14 0.30 6.32 16 3 C -0.33 -11.96 6.13 -20.15 -0.12 -12.09 16 4 C 0.60 19.65 7.35 86.67 0.64 20.29 16 5 O -0.57 -21.96 13.40 -4.04 -0.05 -22.01 16 6 N -0.71 -15.34 4.98 -445.80 -2.22 -17.56 16 7 C 0.08 1.22 2.81 44.99 0.13 1.35 16 8 C 0.05 0.58 7.19 71.98 0.52 1.09 16 9 F -0.23 -6.00 15.71 44.97 0.71 -5.29 16 10 C 0.06 0.47 7.05 71.98 0.51 0.98 16 11 F -0.23 -4.13 17.28 44.97 0.78 -3.35 16 12 C 0.08 2.67 11.50 85.65 0.99 3.65 16 13 N -0.33 -14.09 12.50 -56.28 -0.70 -14.80 16 14 N -0.34 -15.31 3.56 -336.70 -1.20 -16.51 16 15 C 0.23 11.05 5.03 85.63 0.43 11.49 16 16 C -0.55 -31.86 9.94 25.60 0.25 -31.61 16 17 H 0.02 1.66 8.06 -2.91 -0.02 1.64 16 18 C 0.02 1.31 5.47 84.65 0.46 1.77 16 19 N -0.94 -57.07 13.96 21.45 0.30 -56.77 16 20 Si 0.95 40.76 27.47 68.60 1.88 42.64 16 21 H -0.25 -10.09 7.11 99.48 0.71 -9.39 16 22 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 23 H -0.24 -9.50 6.54 99.48 0.65 -8.85 16 24 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 25 H 0.08 2.76 7.05 -2.39 -0.02 2.74 16 26 H 0.10 3.63 6.50 -2.39 -0.02 3.61 16 27 H 0.41 6.38 7.56 -92.71 -0.70 5.68 16 28 H 0.08 1.78 7.58 -2.39 -0.02 1.76 16 29 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.12 0.62 8.14 -2.39 -0.02 0.61 16 31 H 0.13 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.23 4.70 7.50 -2.91 -0.02 4.68 16 34 H 0.06 2.66 7.20 -2.38 -0.02 2.64 16 35 H 0.07 2.96 6.44 -2.39 -0.02 2.95 16 36 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -81.99 315.57 4.63 -77.36 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.37 Total: 15.64 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 4.78 Total: 0.66 kcal Atomic # 7 Polarization: -101.82 SS G_CDS: -3.83 Total: -105.65 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.05 Total: -22.01 kcal Atomic # 9 Polarization: -10.13 SS G_CDS: 1.48 Total: -8.65 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 1.88 Total: 42.64 kcal Total: -81.99 4.63 -77.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891262948.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.212 kcal (2) G-P(sol) polarization free energy of solvation -81.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds