Wall clock time and date at job start Tue Mar 31 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 119.99791 * 2 1 4 4 N 1.46905 * 109.47174 * 125.25025 * 3 2 1 5 5 C 1.46892 * 111.00126 * 170.44466 * 4 3 2 6 6 C 1.53006 * 109.47161 * 293.95382 * 5 4 3 7 7 C 1.52998 * 109.47170 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47185 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99563 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00154 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00043 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 119.99800 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.47008 * 90.00619 * 12 10 8 14 14 H 1.48507 * 109.46970 * 210.00151 * 12 10 8 15 15 H 1.48500 * 109.47346 * 330.00509 * 12 10 8 16 16 C 1.46899 * 110.99377 * 294.39829 * 4 3 2 17 17 H 1.09001 * 109.64945 * 48.68845 * 16 4 3 18 18 C 1.53877 * 109.64538 * 288.25684 * 16 4 3 19 19 C 1.55057 * 106.62201 * 192.97120 * 18 16 4 20 20 S 1.83288 * 102.56612 * 42.43526 * 19 18 16 21 21 O 1.42095 * 109.35715 * 90.18618 * 20 19 18 22 22 O 1.42101 * 109.35205 * 223.38849 * 20 19 18 23 23 C 1.54163 * 109.64449 * 168.98374 * 16 4 3 24 24 H 1.08001 * 119.99768 * 179.97438 * 1 2 3 25 25 H 1.08000 * 120.00178 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.00043 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.47467 * 5.24881 * 3 2 1 28 28 H 1.09005 * 109.47053 * 245.24596 * 3 2 1 29 29 H 1.09002 * 109.47329 * 53.94911 * 5 4 3 30 30 H 1.09002 * 109.47407 * 173.95103 * 5 4 3 31 31 H 1.09002 * 109.46614 * 299.99967 * 6 5 4 32 32 H 1.08998 * 109.47383 * 60.00066 * 6 5 4 33 33 H 1.09002 * 109.47050 * 299.99364 * 7 6 5 34 34 H 1.08998 * 109.47188 * 59.99610 * 7 6 5 35 35 H 0.96999 * 120.00135 * 179.97438 * 11 10 8 36 36 H 1.09005 * 110.02919 * 312.25645 * 18 16 4 37 37 H 1.08994 * 110.03075 * 73.63110 * 18 16 4 38 38 H 1.08998 * 110.78794 * 160.70002 * 19 18 16 39 39 H 1.08996 * 110.78476 * 283.97182 * 19 18 16 40 40 H 1.09003 * 110.32184 * 266.66713 * 23 16 4 41 41 H 1.09007 * 110.32144 * 28.85873 * 23 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0006 1.3296 1.1311 5 6 3.9096 2.4796 1.0369 6 6 4.8168 2.3140 -0.1840 7 6 5.7640 3.5116 -0.2817 8 6 6.6580 3.3482 -1.4838 9 1 6.5606 2.4770 -2.1147 10 6 7.6010 4.3102 -1.7776 11 7 8.3815 4.1674 -2.8264 12 14 7.7698 5.8166 -0.6859 13 1 8.7517 5.5385 0.3929 14 1 8.2402 6.9669 -1.4989 15 1 6.4518 6.1419 -0.0839 16 6 2.2803 1.3312 2.4114 17 1 1.5213 0.5489 2.4059 18 6 1.6109 2.6999 2.6266 19 6 1.1635 2.7464 4.1105 20 16 2.6012 2.0181 4.9835 21 8 3.5104 3.0513 5.3368 22 8 2.1398 1.1093 5.9736 23 6 3.2722 1.0792 3.5643 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3590 2.1314 0.0940 28 1 2.6178 1.4046 -0.9333 29 1 3.3274 3.3955 0.9353 30 1 4.5199 2.5352 1.9383 31 1 5.3990 1.3981 -0.0823 32 1 4.2065 2.2585 -1.0854 33 1 5.1821 4.4277 -0.3832 34 1 6.3743 3.5667 0.6197 35 1 9.0446 4.8444 -3.0333 36 1 2.3239 3.4998 2.4265 37 1 0.7454 2.7993 1.9717 38 1 0.9958 3.7743 4.4319 39 1 0.2682 2.1439 4.2636 40 1 3.3158 0.0159 3.8005 41 1 4.2625 1.4498 3.2996 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066560766.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:35 Heat of formation + Delta-G solvation = -45.833655 kcal Electronic energy + Delta-G solvation = -21366.704251 eV Core-core repulsion = 18181.627702 eV Total energy + Delta-G solvation = -3185.076549 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.47669 -37.23122 -36.22052 -35.02789 -34.37202 -32.72259 -31.23973 -29.87434 -27.33354 -25.72185 -24.37858 -22.89430 -20.57100 -20.26218 -19.34049 -19.04789 -17.14812 -17.07098 -16.62362 -15.92072 -15.66930 -15.39709 -14.89289 -14.58165 -14.47370 -14.11498 -13.77230 -13.55229 -12.88038 -12.78845 -12.56087 -12.45844 -12.25623 -12.21885 -12.06575 -11.89043 -11.63306 -11.42916 -11.08560 -11.00513 -10.93293 -10.75057 -10.50857 -9.99984 -9.78186 -9.65639 -9.46374 -9.20139 -8.55015 -8.38654 -6.05501 -4.03736 -0.18682 2.06815 2.28063 3.30509 3.34713 3.38058 3.40769 3.68199 3.88833 4.09468 4.26222 4.39456 4.44198 4.54334 4.68201 4.80621 4.97432 5.13751 5.22163 5.28111 5.31632 5.35698 5.42766 5.49979 5.54688 5.68015 5.76690 5.83169 6.06420 6.38714 6.42804 6.47297 6.51687 6.83186 7.02344 7.04338 7.28446 7.40300 7.77919 8.52540 8.99559 9.57067 11.07961 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.015333 B = 0.004668 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.709914 B = 5996.234215 C = 7362.278355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.136 4.136 3 C 0.069 3.931 4 N -0.516 5.516 5 C 0.037 3.963 6 C -0.098 4.098 7 C -0.015 4.015 8 C -0.520 4.520 9 H 0.071 0.929 10 C 0.066 3.934 11 N -0.904 5.904 12 Si 0.879 3.121 13 H -0.276 1.276 14 H -0.288 1.288 15 H -0.266 1.266 16 C 0.092 3.908 17 H 0.104 0.896 18 C -0.162 4.162 19 C -0.584 4.584 20 S 2.384 3.616 21 O -0.934 6.934 22 O -0.942 6.942 23 C -0.586 4.586 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.115 0.885 27 H 0.041 0.959 28 H 0.100 0.900 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.014 0.986 34 H 0.012 0.988 35 H 0.263 0.737 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.144 0.856 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.394 -5.985 11.968 22.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.155 4.155 3 C -0.058 4.058 4 N -0.239 5.239 5 C -0.089 4.089 6 C -0.135 4.135 7 C -0.053 4.053 8 C -0.558 4.558 9 H 0.090 0.910 10 C -0.135 4.135 11 N -0.543 5.543 12 Si 0.706 3.294 13 H -0.202 1.202 14 H -0.214 1.214 15 H -0.191 1.191 16 C -0.019 4.019 17 H 0.122 0.878 18 C -0.202 4.202 19 C -0.714 4.714 20 S 2.567 3.433 21 O -0.931 6.931 22 O -0.940 6.940 23 C -0.716 4.716 24 H 0.116 0.884 25 H 0.111 0.889 26 H 0.133 0.867 27 H 0.060 0.940 28 H 0.118 0.882 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.032 0.968 34 H 0.031 0.969 35 H 0.073 0.927 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.162 0.838 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -17.625 -6.241 12.790 22.654 hybrid contribution -0.539 1.480 -0.362 1.616 sum -18.164 -4.761 12.429 22.518 Atomic orbital electron populations 1.23846 0.95907 1.01725 1.02515 1.22983 0.95434 0.98948 0.98102 1.21432 0.94304 0.94433 0.95644 1.62259 1.18019 1.43724 0.99858 1.22563 0.94706 0.90157 1.01502 1.21503 0.96796 1.00790 0.94455 1.19568 0.94726 0.93573 0.97384 1.21112 1.16805 1.07918 1.09921 0.91039 1.25031 0.95339 0.98099 0.95007 1.69912 1.21888 1.35376 1.27105 0.86795 0.78878 0.82887 0.80805 1.20204 1.21423 1.19062 1.22086 0.93641 0.96250 0.89913 0.87812 1.23041 1.03092 1.00262 0.93849 1.30547 1.18696 1.13597 1.08529 1.09198 0.78724 0.77235 0.78142 1.93646 1.61336 1.56042 1.82080 1.93606 1.80995 1.63901 1.55448 1.30691 1.10933 1.15150 1.14816 0.88417 0.88880 0.86669 0.94036 0.88242 0.94286 0.90546 0.91758 0.92628 0.96802 0.96945 0.92741 0.88583 0.88439 0.84592 0.84539 0.83824 0.83349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.62 14.32 29.01 0.42 -1.20 16 2 C -0.14 -1.28 8.46 -36.03 -0.30 -1.59 16 3 C 0.07 0.75 5.16 -4.97 -0.03 0.72 16 4 N -0.52 -6.02 4.45 -226.81 -1.01 -7.03 16 5 C 0.04 0.53 3.86 -3.83 -0.01 0.51 16 6 C -0.10 -1.79 5.10 -26.73 -0.14 -1.93 16 7 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 8 C -0.52 -14.59 9.66 -34.44 -0.33 -14.92 16 9 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 10 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 11 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 12 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 16 C 0.09 0.83 2.47 -66.65 -0.16 0.66 16 17 H 0.10 0.80 6.98 -51.93 -0.36 0.43 16 18 C -0.16 -1.30 5.06 -25.19 -0.13 -1.42 16 19 C -0.58 -3.86 7.31 38.24 0.28 -3.58 16 20 S 2.38 22.49 6.11 -107.50 -0.66 21.84 16 21 O -0.93 -12.66 18.14 -57.71 -1.05 -13.71 16 22 O -0.94 -11.62 18.15 -57.71 -1.05 -12.67 16 23 C -0.59 -5.16 6.74 37.77 0.25 -4.91 16 24 H 0.10 0.68 8.06 -52.49 -0.42 0.25 16 25 H 0.09 0.69 7.84 -52.49 -0.41 0.27 16 26 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 27 H 0.04 0.41 6.49 -51.93 -0.34 0.07 16 28 H 0.10 1.24 6.10 -51.93 -0.32 0.92 16 29 H 0.04 0.53 6.57 -51.93 -0.34 0.19 16 30 H 0.08 1.05 6.05 -51.93 -0.31 0.74 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.06 1.01 6.37 -51.93 -0.33 0.68 16 33 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 34 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 35 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.10 0.86 5.94 -51.93 -0.31 0.55 16 37 H 0.10 0.68 7.30 -51.93 -0.38 0.30 16 38 H 0.14 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.14 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.14 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.15 1.45 6.04 -51.92 -0.31 1.13 16 LS Contribution 332.10 15.07 5.00 5.00 Total: -1.00 -35.37 332.10 -9.32 -44.69 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -6.30 Total: -1.83 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: -0.37 Total: -26.27 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: -0.24 Total: -34.03 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -2.09 Total: -26.37 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Atomic # 16 Polarization: 22.49 SS G_CDS: -0.66 Total: 21.84 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.37 -9.32 -44.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066560766.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.140 kcal (2) G-P(sol) polarization free energy of solvation -35.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds