Wall clock time and date at job start Tue Mar 31 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 119.99791 * 2 1 4 4 N 1.46905 * 109.47174 * 125.25025 * 3 2 1 5 5 C 1.46892 * 111.00126 * 170.44466 * 4 3 2 6 6 C 1.53006 * 109.47161 * 293.95382 * 5 4 3 7 7 C 1.52998 * 109.47170 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47185 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99563 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00154 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00043 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 119.99800 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.47008 * 90.00619 * 12 10 8 14 14 H 1.48507 * 109.46970 * 210.00151 * 12 10 8 15 15 H 1.48500 * 109.47346 * 330.00509 * 12 10 8 16 16 C 1.46899 * 110.99377 * 294.39829 * 4 3 2 17 17 H 1.09001 * 109.64945 * 48.68845 * 16 4 3 18 18 C 1.53877 * 109.64538 * 288.25684 * 16 4 3 19 19 C 1.55057 * 106.62201 * 192.97120 * 18 16 4 20 20 S 1.83288 * 102.56612 * 42.43526 * 19 18 16 21 21 O 1.42095 * 109.35715 * 90.18618 * 20 19 18 22 22 O 1.42101 * 109.35205 * 223.38849 * 20 19 18 23 23 C 1.54163 * 109.64449 * 168.98374 * 16 4 3 24 24 H 1.08001 * 119.99768 * 179.97438 * 1 2 3 25 25 H 1.08000 * 120.00178 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.00043 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.47467 * 5.24881 * 3 2 1 28 28 H 1.09005 * 109.47053 * 245.24596 * 3 2 1 29 29 H 1.09002 * 109.47329 * 53.94911 * 5 4 3 30 30 H 1.09002 * 109.47407 * 173.95103 * 5 4 3 31 31 H 1.09002 * 109.46614 * 299.99967 * 6 5 4 32 32 H 1.08998 * 109.47383 * 60.00066 * 6 5 4 33 33 H 1.09002 * 109.47050 * 299.99364 * 7 6 5 34 34 H 1.08998 * 109.47188 * 59.99610 * 7 6 5 35 35 H 0.96999 * 120.00135 * 179.97438 * 11 10 8 36 36 H 1.09005 * 110.02919 * 312.25645 * 18 16 4 37 37 H 1.08994 * 110.03075 * 73.63110 * 18 16 4 38 38 H 1.08998 * 110.78794 * 160.70002 * 19 18 16 39 39 H 1.08996 * 110.78476 * 283.97182 * 19 18 16 40 40 H 1.09003 * 110.32184 * 266.66713 * 23 16 4 41 41 H 1.09007 * 110.32144 * 28.85873 * 23 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0006 1.3296 1.1311 5 6 3.9096 2.4796 1.0369 6 6 4.8168 2.3140 -0.1840 7 6 5.7640 3.5116 -0.2817 8 6 6.6580 3.3482 -1.4838 9 1 6.5606 2.4770 -2.1147 10 6 7.6010 4.3102 -1.7776 11 7 8.3815 4.1674 -2.8264 12 14 7.7698 5.8166 -0.6859 13 1 8.7517 5.5385 0.3929 14 1 8.2402 6.9669 -1.4989 15 1 6.4518 6.1419 -0.0839 16 6 2.2803 1.3312 2.4114 17 1 1.5213 0.5489 2.4059 18 6 1.6109 2.6999 2.6266 19 6 1.1635 2.7464 4.1105 20 16 2.6012 2.0181 4.9835 21 8 3.5104 3.0513 5.3368 22 8 2.1398 1.1093 5.9736 23 6 3.2722 1.0792 3.5643 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3590 2.1314 0.0940 28 1 2.6178 1.4046 -0.9333 29 1 3.3274 3.3955 0.9353 30 1 4.5199 2.5352 1.9383 31 1 5.3990 1.3981 -0.0823 32 1 4.2065 2.2585 -1.0854 33 1 5.1821 4.4277 -0.3832 34 1 6.3743 3.5667 0.6197 35 1 9.0446 4.8444 -3.0333 36 1 2.3239 3.4998 2.4265 37 1 0.7454 2.7993 1.9717 38 1 0.9958 3.7743 4.4319 39 1 0.2682 2.1439 4.2636 40 1 3.3158 0.0159 3.8005 41 1 4.2625 1.4498 3.2996 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066560766.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:35 Heat of formation + Delta-G solvation = -72.745988 kcal Electronic energy + Delta-G solvation = -21367.871257 eV Core-core repulsion = 18181.627702 eV Total energy + Delta-G solvation = -3186.243555 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.31951 -38.08585 -37.07773 -36.18255 -35.48843 -34.30226 -32.62946 -30.63360 -28.83936 -26.55361 -25.40277 -24.09783 -22.04723 -21.21096 -20.16373 -19.80094 -18.87915 -17.84292 -17.74637 -16.77213 -16.52306 -16.47612 -16.09467 -15.87815 -15.29524 -15.18399 -14.74898 -14.68908 -14.42358 -13.82252 -13.60681 -13.33418 -13.30005 -13.13498 -13.05926 -12.99460 -12.77991 -12.63610 -12.44440 -12.00985 -11.85488 -11.78215 -11.71110 -11.41488 -11.35551 -11.28735 -11.16397 -10.75452 -10.19358 -9.25811 -8.28709 -6.32491 -0.89714 1.37265 1.37572 1.40340 1.49581 1.60534 2.36545 2.65227 2.90202 3.07149 3.11888 3.42320 3.59044 3.73255 3.96948 3.99918 4.07720 4.17450 4.28081 4.38907 4.58820 4.59108 4.65137 4.72181 4.76749 4.81809 4.90717 4.97734 5.00598 5.06598 5.14573 5.19203 5.53657 5.61969 5.68147 5.79780 5.80732 6.04875 6.21415 6.31052 6.76263 7.32240 8.88308 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.015333 B = 0.004668 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.709914 B = 5996.234215 C = 7362.278355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.155 4.155 3 C 0.069 3.931 4 N -0.525 5.525 5 C 0.046 3.954 6 C -0.089 4.089 7 C -0.013 4.013 8 C -0.530 4.530 9 H 0.030 0.970 10 C 0.003 3.997 11 N -0.953 5.953 12 Si 0.949 3.051 13 H -0.269 1.269 14 H -0.285 1.285 15 H -0.243 1.243 16 C 0.089 3.911 17 H 0.125 0.875 18 C -0.166 4.166 19 C -0.554 4.554 20 S 2.387 3.613 21 O -0.982 6.982 22 O -0.976 6.976 23 C -0.583 4.583 24 H 0.110 0.890 25 H 0.105 0.895 26 H 0.108 0.892 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.080 0.920 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.022 0.978 34 H 0.017 0.983 35 H 0.266 0.734 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.154 0.846 39 H 0.166 0.834 40 H 0.158 0.842 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.280 -5.189 13.439 25.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.174 4.174 3 C -0.057 4.057 4 N -0.248 5.248 5 C -0.081 4.081 6 C -0.127 4.127 7 C -0.051 4.051 8 C -0.568 4.568 9 H 0.048 0.952 10 C -0.193 4.193 11 N -0.594 5.594 12 Si 0.772 3.228 13 H -0.194 1.194 14 H -0.210 1.210 15 H -0.166 1.166 16 C -0.021 4.021 17 H 0.143 0.857 18 C -0.206 4.206 19 C -0.687 4.687 20 S 2.575 3.425 21 O -0.980 6.980 22 O -0.973 6.973 23 C -0.714 4.714 24 H 0.129 0.871 25 H 0.123 0.877 26 H 0.126 0.874 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.040 0.960 34 H 0.036 0.964 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.136 0.864 38 H 0.172 0.828 39 H 0.184 0.816 40 H 0.176 0.824 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -20.509 -5.470 14.298 25.593 hybrid contribution 0.290 1.116 -0.945 1.490 sum -20.220 -4.355 13.353 24.619 Atomic orbital electron populations 1.24036 0.95235 1.02918 0.99697 1.22829 0.95943 0.97910 1.00672 1.21408 0.94186 0.95934 0.94221 1.62129 1.18830 1.42443 1.01417 1.22312 0.94848 0.91819 0.99146 1.21306 0.96594 0.98021 0.96798 1.19529 0.94810 0.95823 0.94956 1.21507 1.17795 1.06441 1.11086 0.95204 1.26025 0.94935 1.01831 0.96541 1.70073 1.23048 1.36927 1.29386 0.85680 0.79992 0.78340 0.78774 1.19408 1.21044 1.16627 1.22248 0.93805 0.97830 0.88194 0.85737 1.23086 1.03598 0.98969 0.94919 1.30382 1.17169 1.14766 1.06389 1.08882 0.79163 0.76334 0.78106 1.93581 1.63729 1.57304 1.83340 1.93556 1.81499 1.64820 1.57472 1.30634 1.10421 1.15932 1.14405 0.87141 0.87682 0.87399 0.92480 0.90740 0.93048 0.90222 0.93412 0.93025 0.95981 0.96438 0.92569 0.89465 0.86363 0.82835 0.81581 0.82445 0.84468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 14.32 67.78 0.97 -1.29 16 2 C -0.16 -2.58 8.46 25.64 0.22 -2.36 16 3 C 0.07 1.38 5.16 85.56 0.44 1.82 16 4 N -0.53 -11.32 4.45 -871.48 -3.88 -15.20 16 5 C 0.05 1.24 3.86 86.31 0.33 1.57 16 6 C -0.09 -3.29 5.10 30.60 0.16 -3.14 16 7 C -0.01 -0.60 4.04 29.85 0.12 -0.48 16 8 C -0.53 -30.62 9.66 25.60 0.25 -30.38 16 9 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 10 C 0.00 0.18 5.47 84.66 0.46 0.65 16 11 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 12 Si 0.95 44.36 27.47 68.60 1.88 46.24 16 13 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 14 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 15 H -0.24 -10.38 6.54 99.48 0.65 -9.73 16 16 C 0.09 1.35 2.47 45.61 0.11 1.46 16 17 H 0.12 1.42 6.98 -2.39 -0.02 1.40 16 18 C -0.17 -1.98 5.06 31.59 0.16 -1.82 16 19 C -0.55 -5.07 7.31 72.69 0.53 -4.54 16 20 S 2.39 41.47 6.11 -56.49 -0.34 41.12 16 21 O -0.98 -26.21 18.14 -127.49 -2.31 -28.52 16 22 O -0.98 -22.99 18.15 -127.49 -2.31 -25.31 16 23 C -0.58 -9.32 6.74 72.38 0.49 -8.83 16 24 H 0.11 1.12 8.06 -2.91 -0.02 1.10 16 25 H 0.10 1.08 7.84 -2.91 -0.02 1.06 16 26 H 0.11 1.93 8.06 -2.91 -0.02 1.91 16 27 H 0.06 0.94 6.49 -2.39 -0.02 0.93 16 28 H 0.07 1.84 6.10 -2.38 -0.01 1.83 16 29 H 0.05 1.26 6.57 -2.39 -0.02 1.24 16 30 H 0.08 2.09 6.05 -2.39 -0.01 2.08 16 31 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.05 1.92 6.37 -2.39 -0.02 1.90 16 33 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 34 H 0.02 0.77 7.57 -2.39 -0.02 0.76 16 35 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 36 H 0.09 1.26 5.94 -2.38 -0.01 1.24 16 37 H 0.12 1.02 7.30 -2.39 -0.02 1.01 16 38 H 0.15 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.17 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.16 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.14 2.58 6.04 -2.38 -0.01 2.56 16 Total: -1.00 -78.86 332.10 -1.48 -80.34 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 0.95 Total: 8.69 kcal Atomic # 6 Polarization: -51.58 SS G_CDS: 4.24 Total: -47.34 kcal Atomic # 7 Polarization: -71.65 SS G_CDS: -3.58 Total: -75.23 kcal Atomic # 8 Polarization: -49.20 SS G_CDS: -4.63 Total: -53.83 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.88 Total: 46.24 kcal Atomic # 16 Polarization: 41.47 SS G_CDS: -0.34 Total: 41.12 kcal Total: -78.86 -1.48 -80.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066560766.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.591 kcal (2) G-P(sol) polarization free energy of solvation -78.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds