Wall clock time and date at job start Tue Mar 31 2020 05:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53009 * 109.47082 * 113.09458 * 3 2 1 5 5 C 1.53000 * 109.47104 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.46875 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.47079 * 179.97438 * 6 5 4 8 8 C 1.34780 * 119.99972 * 180.02562 * 7 6 5 9 9 O 1.21595 * 120.00051 * 359.97438 * 8 7 6 10 10 C 1.47540 * 120.00019 * 180.02562 * 8 7 6 11 11 C 1.39668 * 120.19406 * 0.02562 * 10 8 7 12 12 C 1.37826 * 119.91429 * 180.02562 * 11 10 8 13 13 C 1.38570 * 120.32908 * 0.02562 * 12 11 10 14 14 C 1.38027 * 120.39755 * 0.02562 * 13 12 11 15 15 C 1.38832 * 120.07614 * 359.95142 * 14 13 12 16 16 O 1.35518 * 120.16662 * 180.02562 * 15 14 13 17 17 C 1.34817 * 116.99515 * 354.39983 * 16 15 14 18 18 H 1.07998 * 120.00286 * 5.05380 * 17 16 15 19 19 C 1.38705 * 119.99676 * 185.05364 * 17 16 15 20 20 N 1.31516 * 119.99555 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00179 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47116 * 89.99960 * 21 19 17 23 23 H 1.48496 * 109.47169 * 210.00207 * 21 19 17 24 24 H 1.48504 * 109.47217 * 330.00210 * 21 19 17 25 25 H 4.44656 * 5.63306 * 180.02562 * 4 1 2 26 26 H 1.08992 * 109.47591 * 353.09133 * 3 2 1 27 27 H 1.08997 * 109.47317 * 233.08738 * 3 2 1 28 28 H 1.09000 * 109.47011 * 59.99693 * 4 3 2 29 29 H 1.08997 * 109.46457 * 299.99807 * 4 3 2 30 30 H 1.09000 * 109.47100 * 60.00161 * 5 4 3 31 31 H 1.08998 * 109.47062 * 299.99980 * 5 4 3 32 32 H 1.09005 * 109.47230 * 60.00228 * 6 5 4 33 33 H 1.09002 * 109.47347 * 300.00516 * 6 5 4 34 34 H 0.97003 * 120.00032 * 0.02562 * 7 6 5 35 35 H 1.07997 * 120.04235 * 0.27181 * 11 10 8 36 36 H 1.08005 * 119.83485 * 179.97438 * 12 11 10 37 37 H 1.08001 * 119.80371 * 179.97438 * 13 12 11 38 38 H 1.08005 * 119.96278 * 179.97438 * 14 13 12 39 39 H 0.97006 * 119.99663 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1557 0.5667 -1.3270 5 6 4.6857 0.5680 -1.3267 6 6 5.1954 1.1335 -2.6539 7 7 6.6604 1.1353 -2.6534 8 6 7.3340 1.5936 -3.7271 9 8 6.7258 2.0052 -4.6962 10 6 8.8094 1.5950 -3.7269 11 6 9.5121 1.1216 -2.6165 12 6 10.8904 1.1260 -2.6223 13 6 11.5840 1.5985 -3.7249 14 6 10.9029 2.0703 -4.8289 15 6 9.5146 2.0731 -4.8411 16 8 8.8441 2.5354 -5.9243 17 6 9.5801 3.0862 -6.9105 18 1 10.6584 3.0702 -6.8529 19 6 8.9522 3.6733 -7.9990 20 7 9.6702 4.2102 -8.9613 21 14 7.0872 3.7003 -8.0989 22 1 6.5747 4.9352 -7.4527 23 1 6.6673 3.6762 -9.5231 24 1 6.5367 2.5111 -7.4004 25 1 -1.0501 0.0001 0.0003 26 1 3.0098 -1.0193 0.1236 27 1 3.0090 0.6180 0.8216 28 1 2.7919 1.5868 -1.4505 29 1 2.7926 -0.0506 -2.1486 30 1 5.0499 -0.4519 -1.2030 31 1 5.0484 1.1856 -0.5050 32 1 4.8312 2.1534 -2.7781 33 1 4.8326 0.5156 -3.4753 34 1 7.1456 0.8066 -1.8805 35 1 8.9762 0.7490 -1.7561 36 1 11.4325 0.7601 -1.7628 37 1 12.6640 1.5984 -3.7202 38 1 11.4506 2.4373 -5.6844 39 1 9.2312 4.6205 -9.7228 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156000192.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:21 Heat of formation + Delta-G solvation = -18.310478 kcal Electronic energy + Delta-G solvation = -21355.601126 eV Core-core repulsion = 18036.274121 eV Total energy + Delta-G solvation = -3319.327006 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.38299 -39.94944 -38.15554 -37.43277 -35.55938 -34.52047 -33.37535 -32.04060 -30.78326 -29.50878 -27.29821 -25.54008 -24.11792 -22.85266 -22.36319 -21.44382 -19.79555 -19.45012 -18.87910 -17.93835 -17.14291 -16.94792 -16.40949 -16.08812 -15.92114 -15.61973 -15.44744 -15.43063 -15.08805 -14.50185 -14.46744 -14.22949 -14.02640 -13.75457 -13.16162 -12.90082 -12.83786 -12.75828 -12.57867 -12.36616 -12.25852 -12.02710 -11.69281 -11.52939 -11.11306 -10.97477 -10.95579 -10.68928 -10.13442 -9.80236 -9.13687 -8.58503 -6.26974 0.06816 0.66161 1.23639 1.29016 1.57360 1.87026 1.93569 2.04218 2.27863 2.29464 2.75876 3.03403 3.17750 3.53490 3.86111 3.96818 4.02481 4.04869 4.26745 4.30866 4.41888 4.49536 4.57169 4.64188 4.73165 4.78969 4.83190 4.93024 5.05434 5.10469 5.22675 5.29659 5.32457 5.36711 5.48644 5.54489 5.63131 5.70647 5.84263 6.17051 6.68104 6.73011 6.79112 7.42442 7.59392 8.52085 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.015323 B = 0.003778 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.890606 B = 7409.547503 C = 9202.798963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.216 4.216 3 C -0.011 4.011 4 C -0.109 4.109 5 C -0.113 4.113 6 C 0.117 3.883 7 N -0.714 5.714 8 C 0.551 3.449 9 O -0.577 6.577 10 C -0.234 4.234 11 C -0.029 4.029 12 C -0.189 4.189 13 C -0.043 4.043 14 C -0.252 4.252 15 C 0.158 3.842 16 O -0.210 6.210 17 C -0.403 4.403 18 H 0.092 0.908 19 C 0.026 3.974 20 N -0.912 5.912 21 Si 0.956 3.044 22 H -0.276 1.276 23 H -0.265 1.265 24 H -0.267 1.267 25 H 0.238 0.762 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.415 0.585 35 H 0.170 0.830 36 H 0.168 0.832 37 H 0.151 0.849 38 H 0.114 0.886 39 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.088 -10.471 22.703 26.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.216 4.216 3 C -0.047 4.047 4 C -0.148 4.148 5 C -0.151 4.151 6 C -0.006 4.006 7 N -0.369 5.369 8 C 0.341 3.659 9 O -0.458 6.458 10 C -0.239 4.239 11 C -0.047 4.047 12 C -0.207 4.207 13 C -0.061 4.061 14 C -0.271 4.271 15 C 0.105 3.895 16 O -0.115 6.115 17 C -0.479 4.479 18 H 0.110 0.890 19 C -0.175 4.175 20 N -0.552 5.552 21 Si 0.780 3.220 22 H -0.202 1.202 23 H -0.189 1.189 24 H -0.192 1.192 25 H 0.255 0.745 26 H 0.121 0.879 27 H 0.120 0.880 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.254 0.746 35 H 0.187 0.813 36 H 0.186 0.814 37 H 0.168 0.832 38 H 0.132 0.868 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.778 -10.066 21.743 25.517 hybrid contribution -0.467 0.413 -0.808 1.021 sum -9.245 -9.653 20.934 24.838 Atomic orbital electron populations 1.25706 0.97113 1.00879 1.00309 1.23883 0.95866 1.00803 1.01022 1.18829 0.83564 1.03726 0.98567 1.21391 0.94672 1.01549 0.97156 1.21699 0.95110 1.03173 0.95118 1.21375 0.79128 1.00622 0.99506 1.45633 1.07298 1.65618 1.18336 1.18456 0.87715 0.77094 0.82684 1.90843 1.70709 1.48333 1.35880 1.19325 0.92310 1.15877 0.96352 1.21384 0.94944 0.93499 0.94859 1.21256 0.93691 1.05775 0.99983 1.21453 1.01027 0.92288 0.91349 1.21331 0.92943 1.10474 1.02366 1.19818 0.91781 0.91374 0.86503 1.83773 1.35781 1.67235 1.24665 1.20904 0.92185 1.36011 0.98772 0.89049 1.25038 1.03591 0.94730 0.94108 1.69684 1.37800 1.37539 1.10129 0.85413 0.79745 0.79677 0.77192 1.20214 1.18942 1.19198 0.74544 0.87946 0.87962 0.92155 0.92130 0.88933 0.88948 0.93463 0.93439 0.74614 0.81295 0.81415 0.83175 0.86830 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.45 19.25 74.32 1.43 -2.02 16 2 C -0.22 -3.61 13.34 31.13 0.42 -3.19 16 3 C -0.01 -0.12 5.70 28.79 0.16 0.04 16 4 C -0.11 -1.52 5.17 30.60 0.16 -1.36 16 5 C -0.11 -1.43 5.33 30.59 0.16 -1.27 16 6 C 0.12 2.78 5.67 86.38 0.49 3.27 16 7 N -0.71 -18.71 5.51 -466.25 -2.57 -21.28 16 8 C 0.55 22.11 7.76 86.70 0.67 22.79 16 9 O -0.58 -30.27 15.17 16.88 0.26 -30.01 16 10 C -0.23 -9.15 5.89 -19.98 -0.12 -9.27 16 11 C -0.03 -0.74 9.54 22.52 0.21 -0.53 16 12 C -0.19 -4.51 10.02 22.25 0.22 -4.28 16 13 C -0.04 -1.30 10.03 22.30 0.22 -1.08 16 14 C -0.25 -10.76 9.16 22.36 0.20 -10.56 16 15 C 0.16 7.73 6.66 22.91 0.15 7.88 16 16 O -0.21 -12.42 6.67 0.83 0.01 -12.42 16 17 C -0.40 -24.90 9.95 67.93 0.68 -24.23 16 18 H 0.09 5.70 5.44 -2.91 -0.02 5.69 16 19 C 0.03 1.57 5.49 84.85 0.47 2.04 16 20 N -0.91 -56.35 13.96 21.62 0.30 -56.05 16 21 Si 0.96 51.63 28.62 68.60 1.96 53.60 16 22 H -0.28 -14.74 7.11 99.48 0.71 -14.03 16 23 H -0.26 -13.05 7.11 99.48 0.71 -12.35 16 24 H -0.27 -15.58 7.11 99.48 0.71 -14.87 16 25 H 0.24 2.05 7.80 -4.41 -0.03 2.01 16 26 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.42 6.96 6.50 -92.71 -0.60 6.36 16 35 H 0.17 2.51 6.40 -2.91 -0.02 2.49 16 36 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 37 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 38 H 0.11 5.33 5.64 -2.91 -0.02 5.32 16 39 H 0.29 16.26 8.31 -92.70 -0.77 15.49 16 Total: -1.00 -84.17 341.55 5.96 -78.21 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.46 Total: 9.71 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: 5.54 Total: -21.77 kcal Atomic # 7 Polarization: -75.06 SS G_CDS: -2.27 Total: -77.33 kcal Atomic # 8 Polarization: -42.69 SS G_CDS: 0.26 Total: -42.43 kcal Atomic # 14 Polarization: 51.63 SS G_CDS: 1.96 Total: 53.60 kcal Total: -84.17 5.96 -78.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156000192.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.904 kcal (2) G-P(sol) polarization free energy of solvation -84.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds