Wall clock time and date at job start Tue Mar 31 2020 05:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47190 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47304 * 335.74042 * 3 2 1 5 5 C 1.53004 * 109.47255 * 180.02562 * 4 3 2 6 6 N 1.46495 * 109.47156 * 179.97438 * 5 4 3 7 7 C 1.34775 * 120.00172 * 179.97438 * 6 5 4 8 8 O 1.21287 * 119.99798 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.00246 * 179.97438 * 7 6 5 10 10 C 1.50695 * 109.46992 * 180.02562 * 9 7 6 11 11 C 1.38299 * 119.93247 * 90.00201 * 10 9 7 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47448 * 89.99502 * 19 17 15 21 21 H 1.48501 * 109.47175 * 209.99712 * 19 17 15 22 22 H 1.48506 * 109.47415 * 329.99678 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 H 4.44650 * 5.63385 * 179.97438 * 4 1 2 26 26 H 1.09003 * 109.46884 * 215.73896 * 3 2 1 27 27 H 1.08994 * 109.47521 * 95.74058 * 3 2 1 28 28 H 1.08998 * 109.47318 * 59.99615 * 4 3 2 29 29 H 1.09005 * 109.46796 * 299.99894 * 4 3 2 30 30 H 1.08998 * 109.47672 * 59.99342 * 5 4 3 31 31 H 1.09005 * 109.46733 * 299.99443 * 5 4 3 32 32 H 0.97005 * 120.00223 * 359.97438 * 6 5 4 33 33 H 1.08998 * 109.46621 * 60.00483 * 9 7 6 34 34 H 1.08996 * 109.47266 * 300.00146 * 9 7 6 35 35 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 36 36 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 37 37 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 38 38 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 39 39 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.3142 0.5927 5 6 4.6866 -1.3133 0.5933 6 7 5.1755 -2.5720 1.1613 7 6 6.5007 -2.7959 1.2626 8 8 7.2884 -1.9550 0.8839 9 6 7.0036 -4.0905 1.8475 10 6 8.5106 -4.0896 1.8479 11 6 9.2001 -3.5959 2.9405 12 6 10.5811 -3.5942 2.9442 13 6 11.2775 -4.0883 1.8489 14 8 12.6350 -4.0884 1.8498 15 6 13.2464 -3.7026 2.9879 16 1 12.6611 -3.3341 3.8172 17 6 14.6269 -3.7789 3.0934 18 7 15.3401 -4.2282 2.0833 19 14 15.4739 -3.2450 4.6703 20 1 15.5881 -4.4064 5.5887 21 1 16.8300 -2.7292 4.3537 22 1 14.6771 -2.1748 5.3225 23 6 10.5824 -4.5775 0.7507 24 6 9.2013 -4.5818 0.7555 25 1 -1.0498 -0.0003 0.0003 26 1 3.0089 0.8350 0.6003 27 1 3.0093 0.1036 -1.0224 28 1 2.7936 -2.1485 -0.0075 29 1 2.7933 -1.4171 1.6152 30 1 5.0493 -0.4790 1.1937 31 1 5.0502 -1.2102 -0.4292 32 1 4.5455 -3.2444 1.4646 33 1 6.6407 -4.9253 1.2479 34 1 6.6405 -4.1926 2.8701 35 1 8.6579 -3.2122 3.7920 36 1 11.1188 -3.2089 3.7978 37 1 16.3058 -4.2812 2.1570 38 1 11.1212 -4.9584 -0.1043 39 1 8.6602 -4.9662 -0.0964 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172932838.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:46 Heat of formation + Delta-G solvation = 0.369749 kcal Electronic energy + Delta-G solvation = -20629.814775 eV Core-core repulsion = 17311.297805 eV Total energy + Delta-G solvation = -3318.516970 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.78772 -38.76140 -36.78224 -36.21553 -34.26770 -32.45424 -31.84194 -31.00305 -30.09093 -27.45931 -25.96236 -24.93105 -22.31551 -21.91433 -21.10054 -19.98811 -18.49351 -17.92603 -17.01560 -16.79556 -16.20727 -16.10097 -15.11932 -14.62372 -14.43752 -14.33381 -14.15215 -13.62856 -13.50224 -13.37679 -13.24510 -13.16435 -12.64639 -12.43920 -11.89520 -11.84431 -11.59083 -11.39946 -11.22443 -10.80411 -10.72726 -10.65465 -10.57059 -10.49523 -10.38762 -9.68271 -9.27596 -9.13564 -8.77422 -8.09061 -7.10606 -6.40088 -3.98510 2.29390 2.31271 2.41015 2.45425 2.80860 3.14564 3.16675 3.21661 3.24807 3.95164 4.01040 4.55504 4.56357 4.66545 4.78335 5.03177 5.14266 5.16092 5.20615 5.30107 5.33798 5.37937 5.47911 5.62523 5.70487 5.70873 5.77914 5.79761 5.90902 6.27467 6.35685 6.47776 6.76271 6.97450 7.10998 7.22380 7.29605 7.42840 7.47038 7.51251 7.90053 8.05381 8.35370 9.05664 9.76895 10.78129 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.038440 B = 0.002308 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.232511 B =12131.027499 C =12406.940364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.186 4.186 3 C -0.011 4.011 4 C -0.125 4.125 5 C 0.118 3.882 6 N -0.742 5.742 7 C 0.508 3.492 8 O -0.520 6.520 9 C -0.080 4.080 10 C -0.170 4.170 11 C -0.057 4.057 12 C -0.233 4.233 13 C 0.156 3.844 14 O -0.179 6.179 15 C -0.391 4.391 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.864 5.864 19 Si 0.941 3.059 20 H -0.274 1.274 21 H -0.278 1.278 22 H -0.268 1.268 23 C -0.192 4.192 24 C -0.060 4.060 25 H 0.216 0.784 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.398 0.602 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.126 0.874 37 H 0.269 0.731 38 H 0.116 0.884 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.318 3.088 -0.883 25.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.186 4.186 3 C -0.048 4.048 4 C -0.163 4.163 5 C -0.006 4.006 6 N -0.397 5.397 7 C 0.295 3.705 8 O -0.394 6.394 9 C -0.120 4.120 10 C -0.171 4.171 11 C -0.075 4.075 12 C -0.252 4.252 13 C 0.103 3.897 14 O -0.082 6.082 15 C -0.467 4.467 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.499 5.499 19 Si 0.766 3.234 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.211 4.211 24 C -0.078 4.078 25 H 0.233 0.767 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.232 0.768 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.122 0.878 36 H 0.144 0.856 37 H 0.079 0.921 38 H 0.134 0.866 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -24.271 3.624 -1.391 24.580 hybrid contribution -0.204 0.052 0.954 0.977 sum -24.475 3.676 -0.437 24.754 Atomic orbital electron populations 1.24930 0.96010 1.00679 1.01207 1.23092 0.94526 1.00583 1.00365 1.18630 0.84756 0.98527 1.02927 1.21730 0.94649 0.97663 1.02265 1.21281 0.92631 0.87133 0.99536 1.46075 1.07520 1.20026 1.66041 1.21078 0.81412 0.89612 0.78440 1.90751 1.55083 1.46474 1.47079 1.20403 0.94899 0.94684 1.01974 1.18637 0.92007 1.09560 0.96932 1.20507 0.93636 0.96728 0.96646 1.21105 0.94076 1.09190 1.00814 1.19389 0.84880 0.92217 0.93233 1.83976 1.12863 1.74628 1.36752 1.21329 0.90187 1.43451 0.91727 0.89093 1.25286 0.95416 0.96842 0.99035 1.70040 1.06715 1.42803 1.30310 0.85713 0.78749 0.78930 0.80037 1.19918 1.20293 1.19222 1.20154 0.93329 1.08654 0.98963 1.20401 0.93106 0.98020 0.96287 0.76673 0.89064 0.89060 0.90837 0.90851 0.91390 0.91372 0.76829 0.88981 0.89024 0.87840 0.85596 0.92086 0.86551 0.87391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.45 19.25 29.55 0.57 -0.89 16 2 C -0.19 -1.43 13.34 -37.13 -0.50 -1.92 16 3 C -0.01 -0.07 5.70 -29.52 -0.17 -0.24 16 4 C -0.13 -0.74 5.28 -26.73 -0.14 -0.88 16 5 C 0.12 1.00 5.67 -4.04 -0.02 0.98 16 6 N -0.74 -6.90 5.56 -60.29 -0.33 -7.24 16 7 C 0.51 6.94 7.82 -10.98 -0.09 6.86 16 8 O -0.52 -9.83 16.03 5.55 0.09 -9.74 16 9 C -0.08 -0.99 5.83 -29.04 -0.17 -1.16 16 10 C -0.17 -3.01 4.38 -104.58 -0.46 -3.46 16 11 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 12 C -0.23 -5.31 9.17 -39.39 -0.36 -5.67 16 13 C 0.16 3.96 6.65 -39.11 -0.26 3.70 16 14 O -0.18 -5.27 9.76 0.05 0.00 -5.27 16 15 C -0.39 -11.21 9.49 30.89 0.29 -10.92 16 16 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 17 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 18 N -0.86 -25.80 13.67 55.48 0.76 -25.05 16 19 Si 0.94 20.94 29.55 -169.99 -5.02 15.92 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 C -0.19 -4.27 9.99 -39.39 -0.39 -4.66 16 24 C -0.06 -1.13 9.69 -39.61 -0.38 -1.51 16 25 H 0.22 0.79 7.80 -54.10 -0.42 0.36 16 26 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.40 2.41 8.47 -40.82 -0.35 2.06 16 33 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 34 H 0.09 0.92 8.08 -51.93 -0.42 0.50 16 35 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 36 H 0.13 2.86 5.64 -52.49 -0.30 2.57 16 37 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.12 2.49 8.06 -52.49 -0.42 2.06 16 39 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 347.97 15.07 5.24 5.24 Total: -1.00 -35.63 347.97 -6.94 -42.57 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -5.12 Total: 3.83 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -2.56 Total: -20.28 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: 0.42 Total: -32.28 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: 0.09 Total: -15.01 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.63 -6.94 -42.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172932838.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.944 kcal (2) G-P(sol) polarization free energy of solvation -35.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds