Wall clock time and date at job start Tue Mar 31 2020 05:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47190 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47304 * 335.74042 * 3 2 1 5 5 C 1.53004 * 109.47255 * 180.02562 * 4 3 2 6 6 N 1.46495 * 109.47156 * 179.97438 * 5 4 3 7 7 C 1.34775 * 120.00172 * 179.97438 * 6 5 4 8 8 O 1.21287 * 119.99798 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.00246 * 179.97438 * 7 6 5 10 10 C 1.50695 * 109.46992 * 180.02562 * 9 7 6 11 11 C 1.38299 * 119.93247 * 90.00201 * 10 9 7 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47448 * 89.99502 * 19 17 15 21 21 H 1.48501 * 109.47175 * 209.99712 * 19 17 15 22 22 H 1.48506 * 109.47415 * 329.99678 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 H 4.44650 * 5.63385 * 179.97438 * 4 1 2 26 26 H 1.09003 * 109.46884 * 215.73896 * 3 2 1 27 27 H 1.08994 * 109.47521 * 95.74058 * 3 2 1 28 28 H 1.08998 * 109.47318 * 59.99615 * 4 3 2 29 29 H 1.09005 * 109.46796 * 299.99894 * 4 3 2 30 30 H 1.08998 * 109.47672 * 59.99342 * 5 4 3 31 31 H 1.09005 * 109.46733 * 299.99443 * 5 4 3 32 32 H 0.97005 * 120.00223 * 359.97438 * 6 5 4 33 33 H 1.08998 * 109.46621 * 60.00483 * 9 7 6 34 34 H 1.08996 * 109.47266 * 300.00146 * 9 7 6 35 35 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 36 36 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 37 37 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 38 38 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 39 39 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.3142 0.5927 5 6 4.6866 -1.3133 0.5933 6 7 5.1755 -2.5720 1.1613 7 6 6.5007 -2.7959 1.2626 8 8 7.2884 -1.9550 0.8839 9 6 7.0036 -4.0905 1.8475 10 6 8.5106 -4.0896 1.8479 11 6 9.2001 -3.5959 2.9405 12 6 10.5811 -3.5942 2.9442 13 6 11.2775 -4.0883 1.8489 14 8 12.6350 -4.0884 1.8498 15 6 13.2464 -3.7026 2.9879 16 1 12.6611 -3.3341 3.8172 17 6 14.6269 -3.7789 3.0934 18 7 15.3401 -4.2282 2.0833 19 14 15.4739 -3.2450 4.6703 20 1 15.5881 -4.4064 5.5887 21 1 16.8300 -2.7292 4.3537 22 1 14.6771 -2.1748 5.3225 23 6 10.5824 -4.5775 0.7507 24 6 9.2013 -4.5818 0.7555 25 1 -1.0498 -0.0003 0.0003 26 1 3.0089 0.8350 0.6003 27 1 3.0093 0.1036 -1.0224 28 1 2.7936 -2.1485 -0.0075 29 1 2.7933 -1.4171 1.6152 30 1 5.0493 -0.4790 1.1937 31 1 5.0502 -1.2102 -0.4292 32 1 4.5455 -3.2444 1.4646 33 1 6.6407 -4.9253 1.2479 34 1 6.6405 -4.1926 2.8701 35 1 8.6579 -3.2122 3.7920 36 1 11.1188 -3.2089 3.7978 37 1 16.3058 -4.2812 2.1570 38 1 11.1212 -4.9584 -0.1043 39 1 8.6602 -4.9662 -0.0964 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172932838.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:46 Heat of formation + Delta-G solvation = -23.599417 kcal Electronic energy + Delta-G solvation = -20630.854156 eV Core-core repulsion = 17311.297805 eV Total energy + Delta-G solvation = -3319.556351 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.05975 -40.35364 -38.26995 -37.14374 -35.02851 -34.38752 -33.00781 -31.99462 -31.75263 -28.62964 -27.43326 -26.42310 -23.62260 -23.02069 -22.43564 -21.19931 -19.83234 -18.96750 -18.84110 -17.85362 -17.09032 -16.91739 -16.43046 -16.30332 -15.81716 -15.64808 -15.50383 -15.08934 -14.91787 -14.42164 -14.33316 -14.20937 -13.91431 -13.78043 -13.57262 -12.95965 -12.75530 -12.49507 -12.41985 -12.27645 -12.23913 -12.12491 -12.10685 -11.22490 -11.17093 -10.97839 -10.87615 -10.71040 -10.01873 -9.74920 -8.88551 -8.46677 -6.14866 0.62845 0.68958 1.34311 1.44067 1.52328 1.77500 1.85470 1.94163 2.18301 2.35504 2.86687 3.19612 3.49536 3.53164 3.89267 4.05056 4.06927 4.08139 4.20581 4.26292 4.34818 4.51421 4.61531 4.64785 4.67208 4.74766 4.82495 4.86887 5.10657 5.15698 5.18432 5.20502 5.23242 5.32354 5.54605 5.58175 5.72896 5.79745 6.03672 6.24987 6.68048 6.72982 6.97752 7.41118 7.79447 8.76816 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.038440 B = 0.002308 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.232511 B =12131.027499 C =12406.940364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.216 4.216 3 C -0.014 4.014 4 C -0.110 4.110 5 C 0.118 3.882 6 N -0.720 5.720 7 C 0.508 3.492 8 O -0.583 6.583 9 C -0.078 4.078 10 C -0.146 4.146 11 C -0.061 4.061 12 C -0.245 4.245 13 C 0.111 3.889 14 O -0.234 6.234 15 C -0.415 4.415 16 H 0.100 0.900 17 C -0.025 4.025 18 N -0.921 5.921 19 Si 1.021 2.979 20 H -0.261 1.261 21 H -0.270 1.270 22 H -0.255 1.255 23 C -0.207 4.207 24 C -0.058 4.058 25 H 0.241 0.759 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.418 0.582 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.139 0.861 36 H 0.117 0.883 37 H 0.273 0.727 38 H 0.112 0.888 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.371 2.897 0.382 29.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.216 4.216 3 C -0.051 4.051 4 C -0.147 4.147 5 C -0.006 4.006 6 N -0.374 5.374 7 C 0.296 3.704 8 O -0.462 6.462 9 C -0.117 4.117 10 C -0.147 4.147 11 C -0.079 4.079 12 C -0.264 4.264 13 C 0.061 3.939 14 O -0.141 6.141 15 C -0.491 4.491 16 H 0.117 0.883 17 C -0.222 4.222 18 N -0.560 5.560 19 Si 0.840 3.160 20 H -0.185 1.185 21 H -0.195 1.195 22 H -0.178 1.178 23 C -0.227 4.227 24 C -0.076 4.076 25 H 0.257 0.743 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.256 0.744 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.156 0.844 36 H 0.135 0.865 37 H 0.082 0.918 38 H 0.130 0.870 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -28.449 3.406 -0.121 28.652 hybrid contribution 0.605 0.103 0.449 0.760 sum -27.844 3.509 0.328 28.066 Atomic orbital electron populations 1.25695 0.96973 0.99804 1.00392 1.23558 0.95364 1.01465 1.01206 1.18671 0.84271 0.98792 1.03328 1.21586 0.92357 0.97878 1.02909 1.21315 0.94322 0.86361 0.98638 1.45869 1.06544 1.20628 1.64369 1.21192 0.82243 0.89191 0.77756 1.90757 1.56833 1.48455 1.50151 1.20535 0.90581 0.95450 1.05150 1.19290 0.95394 1.05013 0.94965 1.20948 0.92235 0.96153 0.98580 1.21235 0.95874 1.09396 0.99917 1.19949 0.84092 0.94470 0.95401 1.83935 1.15052 1.77451 1.37691 1.21827 0.91055 1.43993 0.92195 0.88254 1.26626 0.95766 0.96664 1.03128 1.70190 1.07114 1.45503 1.33167 0.84565 0.77404 0.79043 0.75029 1.18543 1.19517 1.17833 1.20450 0.95145 1.08880 0.98191 1.20892 0.91658 0.97091 0.97987 0.74300 0.88727 0.88690 0.89991 0.90048 0.92473 0.92387 0.74433 0.85051 0.85304 0.84352 0.86517 0.91848 0.87024 0.83507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.45 19.25 74.32 1.43 -1.02 16 2 C -0.22 -2.90 13.34 31.12 0.42 -2.49 16 3 C -0.01 -0.14 5.70 28.79 0.16 0.02 16 4 C -0.11 -0.97 5.28 30.60 0.16 -0.81 16 5 C 0.12 1.70 5.67 86.38 0.49 2.19 16 6 N -0.72 -10.48 5.56 -463.05 -2.57 -13.05 16 7 C 0.51 11.97 7.82 87.66 0.69 12.65 16 8 O -0.58 -20.96 16.03 -3.05 -0.05 -21.01 16 9 C -0.08 -1.51 5.83 29.10 0.17 -1.34 16 10 C -0.15 -4.67 4.38 -19.84 -0.09 -4.76 16 11 C -0.06 -2.24 9.69 22.25 0.22 -2.03 16 12 C -0.25 -11.42 9.17 22.39 0.21 -11.22 16 13 C 0.11 5.89 6.65 22.58 0.15 6.04 16 14 O -0.23 -14.84 9.76 -22.72 -0.22 -15.07 16 15 C -0.41 -25.20 9.49 67.92 0.64 -24.55 16 16 H 0.10 5.57 5.20 -2.91 -0.02 5.55 16 17 C -0.02 -1.45 5.49 84.84 0.47 -0.98 16 18 N -0.92 -58.21 13.67 21.62 0.30 -57.92 16 19 Si 1.02 44.23 29.55 68.60 2.03 46.25 16 20 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 22 H -0.25 -10.32 7.11 99.48 0.71 -9.61 16 23 C -0.21 -9.47 9.99 22.39 0.22 -9.25 16 24 C -0.06 -2.08 9.69 22.25 0.22 -1.86 16 25 H 0.24 1.11 7.80 -4.43 -0.03 1.08 16 26 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 0.99 8.14 -2.38 -0.02 0.98 16 32 H 0.42 2.85 8.47 -92.70 -0.79 2.07 16 33 H 0.13 1.66 8.08 -2.39 -0.02 1.64 16 34 H 0.13 1.69 8.08 -2.39 -0.02 1.67 16 35 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 36 H 0.12 5.52 5.64 -2.91 -0.02 5.50 16 37 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 38 H 0.11 5.03 8.06 -2.91 -0.02 5.01 16 39 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -85.14 347.97 5.30 -79.84 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.27 Total: 20.34 kcal Atomic # 6 Polarization: -44.94 SS G_CDS: 5.55 Total: -39.39 kcal Atomic # 7 Polarization: -68.69 SS G_CDS: -2.28 Total: -70.97 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -0.27 Total: -36.07 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -85.14 5.30 -79.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172932838.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.240 kcal (2) G-P(sol) polarization free energy of solvation -85.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds