Wall clock time and date at job start Tue Mar 31 2020 05:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47494 * 56.79712 * 3 2 1 5 5 C 1.52996 * 109.47283 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47128 * 179.97438 * 5 4 3 7 7 C 1.34774 * 120.00119 * 180.02562 * 6 5 4 8 8 O 1.21279 * 120.00124 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99954 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.47027 * 179.97438 * 9 7 6 11 11 C 1.38328 * 119.96230 * 269.97567 * 10 9 7 12 12 C 1.38280 * 120.13484 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.07150 * 359.67534 * 12 11 10 14 14 C 1.38861 * 119.92830 * 0.59673 * 13 12 11 15 15 O 1.35751 * 120.06597 * 179.69892 * 14 13 12 16 16 C 1.34829 * 117.00376 * 354.17384 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38657 * 120.00083 * 185.03464 * 16 15 14 19 19 N 1.31555 * 119.99797 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99748 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47410 * 90.00109 * 20 18 16 22 22 H 1.48504 * 109.46801 * 209.99865 * 20 18 16 23 23 H 1.48497 * 109.47495 * 329.99577 * 20 18 16 24 24 C 1.38073 * 119.96947 * 89.99413 * 10 9 7 25 25 H 4.44654 * 5.63273 * 180.02562 * 4 1 2 26 26 H 1.09007 * 109.47203 * 296.79690 * 3 2 1 27 27 H 1.09003 * 109.46994 * 176.79866 * 3 2 1 28 28 H 1.09007 * 109.46913 * 59.99801 * 4 3 2 29 29 H 1.09003 * 109.47125 * 300.00074 * 4 3 2 30 30 H 1.09007 * 109.47155 * 60.00137 * 5 4 3 31 31 H 1.09003 * 109.47254 * 300.00184 * 5 4 3 32 32 H 0.97009 * 119.99766 * 0.02562 * 6 5 4 33 33 H 1.08993 * 109.47200 * 59.99691 * 9 7 6 34 34 H 1.09003 * 109.46989 * 299.99567 * 9 7 6 35 35 H 1.08001 * 119.93314 * 0.02562 * 11 10 9 36 36 H 1.08007 * 119.96121 * 179.97438 * 12 11 10 37 37 H 1.08001 * 120.03709 * 180.32387 * 13 12 11 38 38 H 0.96998 * 119.99749 * 179.97438 * 19 18 16 39 39 H 1.08001 * 120.03594 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -0.7890 -1.2070 5 6 4.6864 -0.7878 -1.2073 6 7 5.1751 -1.5444 -2.3626 7 6 6.5003 -1.6788 -2.5686 8 8 7.2881 -1.1729 -1.7978 9 6 7.0030 -2.4566 -3.7574 10 6 8.5099 -2.4555 -3.7577 11 6 9.1999 -1.4526 -4.4146 12 6 10.5827 -1.4484 -4.4176 13 6 11.2793 -2.4425 -3.7585 14 6 10.5895 -3.4537 -3.1029 15 8 11.2713 -4.4355 -2.4594 16 6 12.6127 -4.4395 -2.5954 17 1 13.1040 -3.6382 -3.1273 18 6 13.3615 -5.4725 -2.0524 19 7 14.6703 -5.4766 -2.1856 20 14 12.5117 -6.8589 -1.1331 21 1 12.1637 -7.9440 -2.0852 22 1 13.4225 -7.3909 -0.0878 23 1 11.2735 -6.3440 -0.4952 24 6 9.2005 -3.4557 -3.1026 25 1 -1.0499 0.0000 -0.0003 26 1 3.0096 -0.4625 0.9174 27 1 3.0089 1.0269 -0.0574 28 1 2.7929 -0.3258 -2.1243 29 1 2.7936 -1.8153 -1.1496 30 1 5.0503 -1.2507 -0.2899 31 1 5.0489 0.2386 -1.2649 32 1 4.5449 -1.9487 -2.9794 33 1 6.6395 -1.9935 -4.6747 34 1 6.6401 -3.4829 -3.7000 35 1 8.6576 -0.6713 -4.9263 36 1 11.1186 -0.6642 -4.9318 37 1 12.3593 -2.4357 -3.7568 38 1 15.1942 -6.1991 -1.8054 39 1 8.6613 -4.2388 -2.5904 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179411976.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:49 Heat of formation + Delta-G solvation = 2.591241 kcal Electronic energy + Delta-G solvation = -20806.591529 eV Core-core repulsion = 17488.170890 eV Total energy + Delta-G solvation = -3318.420639 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.88648 -38.91008 -36.86331 -36.31212 -34.30254 -32.43911 -32.21492 -31.42133 -29.40886 -27.78640 -26.08461 -25.07662 -22.39068 -21.76236 -21.13787 -20.08980 -18.49837 -17.68291 -17.19723 -16.87788 -16.23300 -15.98150 -15.31521 -15.08407 -14.55989 -14.39013 -13.96032 -13.76426 -13.59780 -13.39123 -13.28863 -13.18079 -12.53140 -12.40584 -12.13701 -11.89481 -11.75921 -11.47636 -11.26568 -10.80638 -10.76692 -10.69374 -10.65457 -10.49652 -10.11883 -9.77498 -9.34136 -9.17882 -8.82421 -8.09653 -7.30598 -6.36289 -4.02783 2.05474 2.33559 2.39420 2.45385 2.73892 3.16649 3.26008 3.28569 3.44639 3.94599 4.28400 4.49188 4.54762 4.63543 4.76184 4.78060 4.98936 5.12096 5.13673 5.19251 5.23512 5.37263 5.45302 5.59672 5.62534 5.69622 5.72947 5.76782 5.89052 6.16981 6.30061 6.31318 6.57946 6.84057 7.15026 7.22318 7.26260 7.36470 7.41131 7.66200 7.86198 8.09684 8.27983 8.99341 9.62739 10.71585 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.022806 B = 0.002740 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.433360 B =10215.047928 C =11078.939156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.186 4.186 3 C -0.011 4.011 4 C -0.125 4.125 5 C 0.118 3.882 6 N -0.740 5.740 7 C 0.512 3.488 8 O -0.518 6.518 9 C -0.094 4.094 10 C -0.035 4.035 11 C -0.188 4.188 12 C -0.076 4.076 13 C -0.217 4.217 14 C 0.160 3.840 15 O -0.220 6.220 16 C -0.388 4.388 17 H 0.106 0.894 18 C 0.062 3.938 19 N -0.882 5.882 20 Si 0.905 3.095 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.260 1.260 24 C -0.175 4.175 25 H 0.216 0.784 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.399 0.601 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.132 0.868 38 H 0.278 0.722 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.758 8.396 -1.177 26.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.186 4.186 3 C -0.048 4.048 4 C -0.163 4.163 5 C -0.006 4.006 6 N -0.395 5.395 7 C 0.299 3.701 8 O -0.392 6.392 9 C -0.134 4.134 10 C -0.036 4.036 11 C -0.207 4.207 12 C -0.095 4.095 13 C -0.236 4.236 14 C 0.108 3.892 15 O -0.125 6.125 16 C -0.463 4.463 17 H 0.123 0.877 18 C -0.141 4.141 19 N -0.520 5.520 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.184 1.184 24 C -0.194 4.194 25 H 0.233 0.767 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.233 0.767 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.150 0.850 38 H 0.089 0.911 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -24.002 8.465 -0.398 25.454 hybrid contribution -0.638 -0.712 0.091 0.961 sum -24.640 7.752 -0.307 25.833 Atomic orbital electron populations 1.24931 0.96010 1.01082 1.00765 1.23087 0.94521 1.00425 1.00556 1.18629 0.84769 1.02025 0.99409 1.21730 0.94578 1.01431 0.98583 1.21297 0.92700 0.97036 0.89530 1.46018 1.07359 1.56871 1.29212 1.20768 0.81617 0.80632 0.87108 1.90767 1.55028 1.46890 1.46533 1.20590 0.94490 1.01427 0.96866 1.18659 0.92036 0.95049 0.97853 1.20421 0.94132 0.99947 1.06199 1.20738 0.93796 0.97244 0.97684 1.21295 1.01083 0.97041 1.04229 1.19015 0.91023 0.88458 0.90694 1.83567 1.21599 1.45103 1.62228 1.20763 0.77350 1.10818 1.37400 0.87666 1.24456 0.94805 0.97859 0.96949 1.69648 1.04367 1.33602 1.44369 0.86185 0.79907 0.81221 0.79619 1.19941 1.20834 1.18374 1.19941 0.91395 1.01713 1.06346 0.76670 0.89029 0.89071 0.90835 0.90784 0.91258 0.91312 0.76726 0.88292 0.88249 0.87732 0.87174 0.84994 0.91143 0.86841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.46 19.25 29.55 0.57 -0.89 16 2 C -0.19 -1.43 13.34 -37.12 -0.50 -1.93 16 3 C -0.01 -0.07 5.70 -29.52 -0.17 -0.24 16 4 C -0.13 -0.73 5.28 -26.73 -0.14 -0.87 16 5 C 0.12 0.99 5.67 -4.04 -0.02 0.97 16 6 N -0.74 -6.79 5.56 -60.29 -0.33 -7.13 16 7 C 0.51 6.95 7.82 -10.99 -0.09 6.86 16 8 O -0.52 -9.73 16.03 5.56 0.09 -9.64 16 9 C -0.09 -1.15 5.83 -29.03 -0.17 -1.32 16 10 C -0.04 -0.62 4.37 -104.65 -0.46 -1.08 16 11 C -0.19 -3.31 9.70 -39.53 -0.38 -3.69 16 12 C -0.08 -1.46 10.04 -39.61 -0.40 -1.86 16 13 C -0.22 -4.92 9.17 -39.39 -0.36 -5.28 16 14 C 0.16 3.87 6.65 -39.11 -0.26 3.61 16 15 O -0.22 -6.00 8.59 0.05 0.00 -6.00 16 16 C -0.39 -11.22 9.95 30.89 0.31 -10.91 16 17 H 0.11 3.11 5.44 -52.49 -0.29 2.82 16 18 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 19 N -0.88 -25.93 13.96 55.48 0.77 -25.15 16 20 Si 0.91 22.16 28.62 -169.99 -4.86 17.30 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.26 -6.42 7.11 56.52 0.40 -6.02 16 24 C -0.17 -3.63 9.65 -39.40 -0.38 -4.01 16 25 H 0.22 0.80 7.80 -54.10 -0.42 0.38 16 26 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.40 2.35 8.47 -40.82 -0.35 2.00 16 33 H 0.10 0.92 8.08 -51.93 -0.42 0.50 16 34 H 0.10 1.01 8.09 -51.93 -0.42 0.59 16 35 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 37 H 0.13 3.10 5.64 -52.49 -0.30 2.81 16 38 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.11 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 346.85 15.07 5.23 5.23 Total: -1.00 -34.86 346.85 -6.78 -41.64 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.13 Total: 2.72 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -2.54 Total: -18.96 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 0.44 Total: -32.28 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: 0.09 Total: -15.64 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.86 Total: 17.30 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.86 -6.78 -41.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179411976.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.231 kcal (2) G-P(sol) polarization free energy of solvation -34.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds