Wall clock time and date at job start Tue Mar 31 2020 06:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46960 * 2 1 4 4 C 1.53007 * 109.47239 * 180.02562 * 3 2 1 5 5 S 1.81396 * 109.47512 * 180.02562 * 4 3 2 6 6 C 1.81399 * 103.00024 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.47030 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47160 * 179.97438 * 7 6 5 9 9 O 1.21284 * 119.99855 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00197 * 180.02562 * 8 7 6 11 11 C 1.47581 * 134.49354 * 180.02562 * 10 8 7 12 12 C 1.53945 * 86.11895 * 155.35947 * 11 10 8 13 13 O 1.42904 * 113.73986 * 269.15696 * 12 11 10 14 14 C 1.50694 * 113.74220 * 137.95139 * 12 11 10 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 12 11 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.47582 * 134.48982 * 359.97438 * 10 8 7 23 23 H 1.08997 * 109.46979 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46907 * 299.99852 * 1 2 3 25 25 H 1.08995 * 109.47466 * 59.99272 * 1 2 3 26 26 H 1.09003 * 109.46872 * 240.00695 * 2 1 3 27 27 H 1.08995 * 109.47466 * 120.00728 * 2 1 3 28 28 H 1.08996 * 109.47388 * 60.00471 * 3 2 1 29 29 H 1.08998 * 109.47612 * 300.00091 * 3 2 1 30 30 H 1.08996 * 109.46890 * 59.99745 * 4 3 2 31 31 H 1.08998 * 109.46550 * 300.00321 * 4 3 2 32 32 H 1.09008 * 109.47078 * 60.00147 * 6 5 4 33 33 H 1.09001 * 109.47104 * 299.99740 * 6 5 4 34 34 H 1.08994 * 109.46740 * 60.00070 * 7 6 5 35 35 H 1.09001 * 109.47279 * 300.00018 * 7 6 5 36 36 H 1.09001 * 113.77016 * 41.05438 * 11 10 8 37 37 H 1.09005 * 113.86980 * 269.67513 * 11 10 8 38 38 H 0.96699 * 113.99284 * 178.07513 * 13 12 11 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 40 40 H 1.09002 * 113.76615 * 90.34214 * 22 10 8 41 41 H 1.08991 * 113.77327 * 318.94082 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 16 4.1747 3.1528 0.0001 6 6 5.9771 2.9483 0.0000 7 6 6.6465 4.3242 0.0000 8 6 8.1439 4.1543 0.0006 9 8 8.6280 3.0423 0.0005 10 7 8.9450 5.2381 0.0012 11 6 10.4064 5.4440 0.0013 12 6 10.1084 6.8122 -0.6383 13 8 10.0921 6.7880 -2.0671 14 6 10.9404 7.9374 -0.0793 15 1 11.6637 7.7398 0.6980 16 6 10.7782 9.2195 -0.5600 17 7 9.8977 9.4603 -1.5069 18 14 11.8090 10.6144 0.1335 19 1 11.1031 11.2246 1.2888 20 1 13.1227 10.0848 0.5796 21 1 12.0207 11.6429 -0.9166 22 6 8.7132 6.6956 0.0010 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 3.9330 0.9288 -0.8908 31 1 3.9337 0.9285 0.8891 32 1 6.2803 2.3972 -0.8903 33 1 6.2802 2.3964 0.8898 34 1 6.3434 4.8756 0.8900 35 1 6.3433 4.8757 -0.8900 36 1 10.9464 4.7608 -0.6542 37 1 10.8423 5.5106 0.9982 38 1 9.8763 7.6391 -2.4723 39 1 9.7834 10.3623 -1.8448 40 1 8.6493 7.1304 0.9985 41 1 7.9019 7.0114 -0.6548 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352209702.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:43 Heat of formation + Delta-G solvation = -94.514634 kcal Electronic energy + Delta-G solvation = -20001.862703 eV Core-core repulsion = 16814.675188 eV Total energy + Delta-G solvation = -3187.187514 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.23421 -39.20899 -36.57086 -35.83103 -34.13206 -33.99381 -31.14550 -30.46148 -27.53503 -27.01570 -25.51923 -24.36540 -22.03450 -21.65922 -19.93232 -19.27035 -18.17347 -17.28296 -17.07489 -16.97527 -16.68905 -16.60137 -15.93034 -15.58362 -15.15287 -14.81753 -14.49313 -14.46820 -14.23365 -13.86044 -13.70687 -13.49154 -13.39455 -13.23643 -12.84759 -12.74496 -12.62772 -12.34480 -12.25225 -12.20606 -12.15070 -11.74654 -11.51329 -11.39053 -11.00403 -10.96054 -10.63941 -10.25811 -9.60338 -8.74538 -8.26657 -6.43373 0.52219 1.46895 1.50523 1.54603 1.56375 1.59856 1.97833 2.41036 2.96054 3.48009 3.64293 3.80755 3.81977 3.84729 3.89441 4.17764 4.18925 4.32703 4.37880 4.45509 4.55230 4.55558 4.63775 4.66220 4.76859 4.79898 4.84373 4.90150 4.91658 4.94989 5.04413 5.24026 5.24074 5.32363 5.44469 5.73232 5.92770 6.62103 6.80923 7.07025 7.30200 7.46779 8.79339 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.038029 B = 0.002545 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.112944 B =11001.068560 C =11377.871428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.099 4.099 4 C -0.078 4.078 5 S -0.285 6.285 6 C -0.056 4.056 7 C -0.107 4.107 8 C 0.528 3.472 9 O -0.596 6.596 10 N -0.634 5.634 11 C 0.111 3.889 12 C 0.217 3.783 13 O -0.588 6.588 14 C -0.555 4.555 15 H 0.072 0.928 16 C 0.032 3.968 17 N -0.916 5.916 18 Si 0.969 3.031 19 H -0.271 1.271 20 H -0.271 1.271 21 H -0.284 1.284 22 C 0.091 3.909 23 H 0.062 0.938 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.058 0.942 37 H 0.104 0.896 38 H 0.389 0.611 39 H 0.276 0.724 40 H 0.096 0.904 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.023 -10.913 4.062 19.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.138 4.138 4 C -0.226 4.226 5 S -0.057 6.057 6 C -0.204 4.204 7 C -0.148 4.148 8 C 0.318 3.682 9 O -0.479 6.479 10 N -0.367 5.367 11 C -0.012 4.012 12 C 0.176 3.824 13 O -0.400 6.400 14 C -0.593 4.593 15 H 0.091 0.909 16 C -0.169 4.169 17 N -0.557 5.557 18 Si 0.794 3.206 19 H -0.196 1.196 20 H -0.196 1.196 21 H -0.210 1.210 22 C -0.032 4.032 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.132 0.868 35 H 0.122 0.878 36 H 0.077 0.923 37 H 0.121 0.879 38 H 0.244 0.756 39 H 0.086 0.914 40 H 0.114 0.886 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.412 -11.179 4.033 19.462 hybrid contribution 1.263 0.309 -0.002 1.301 sum -14.149 -10.869 4.031 18.291 Atomic orbital electron populations 1.21767 0.94933 1.02242 1.02050 1.21511 0.96538 0.94928 1.02679 1.21352 0.90769 0.98472 1.03184 1.23501 1.00327 0.93107 1.05655 1.86834 1.04903 1.15747 1.98221 1.22907 0.92603 0.99161 1.05749 1.21213 0.89127 0.98125 1.06339 1.20696 0.89613 0.82626 0.75270 1.90613 1.77881 1.25397 1.54056 1.50202 1.08683 1.07184 1.70633 1.23466 0.81162 0.95942 1.00586 1.20134 0.91378 0.91390 0.79523 1.86044 1.93494 1.40129 1.20358 1.21724 1.22897 0.92641 1.22006 0.90946 1.25754 0.95497 1.01026 0.94575 1.69379 1.34952 1.23003 1.28356 0.85383 0.79003 0.78146 0.78059 1.19639 1.19586 1.20966 1.24151 1.01502 0.76051 1.01463 0.91862 0.92556 0.92654 0.91498 0.91364 0.91154 0.91327 0.89574 0.89341 0.90229 0.89632 0.86815 0.87798 0.92346 0.87861 0.75634 0.91410 0.88641 0.91199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 71.98 0.71 -0.85 16 2 C -0.12 -1.34 5.93 30.59 0.18 -1.16 16 3 C -0.10 -1.44 5.22 30.60 0.16 -1.28 16 4 C -0.08 -1.36 5.94 71.98 0.43 -0.93 16 5 S -0.29 -6.75 21.74 -56.49 -1.23 -7.98 16 6 C -0.06 -1.51 5.23 71.98 0.38 -1.13 16 7 C -0.11 -3.23 5.46 29.85 0.16 -3.06 16 8 C 0.53 20.67 8.06 87.66 0.71 21.38 16 9 O -0.60 -26.66 16.71 -3.04 -0.05 -26.71 16 10 N -0.63 -26.14 3.61 -840.31 -3.03 -29.17 16 11 C 0.11 4.79 8.23 86.48 0.71 5.50 16 12 C 0.22 10.25 1.44 -10.89 -0.02 10.24 16 13 O -0.59 -30.37 13.48 -148.98 -2.01 -32.38 16 14 C -0.55 -27.19 8.62 25.60 0.22 -26.97 16 15 H 0.07 3.45 7.81 -2.91 -0.02 3.42 16 16 C 0.03 1.55 5.40 84.66 0.46 2.01 16 17 N -0.92 -45.50 11.09 21.45 0.24 -45.26 16 18 Si 0.97 38.83 29.54 68.60 2.03 40.85 16 19 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 20 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 21 H -0.28 -11.33 7.11 99.48 0.71 -10.63 16 22 C 0.09 3.75 8.00 86.47 0.69 4.44 16 23 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 25 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 31 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.08 2.28 8.10 -2.39 -0.02 2.26 16 33 H 0.09 2.33 8.10 -2.39 -0.02 2.31 16 34 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 35 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 36 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.10 4.04 8.09 -2.38 -0.02 4.02 16 38 H 0.39 20.28 6.46 -74.06 -0.48 19.80 16 39 H 0.28 13.00 8.31 -92.71 -0.77 12.23 16 40 H 0.10 3.69 8.09 -2.39 -0.02 3.67 16 41 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -57.05 355.73 1.26 -55.79 By element: Atomic # 1 Polarization: 36.16 SS G_CDS: 0.52 Total: 36.68 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 4.79 Total: 8.18 kcal Atomic # 7 Polarization: -71.64 SS G_CDS: -2.79 Total: -74.44 kcal Atomic # 8 Polarization: -57.03 SS G_CDS: -2.06 Total: -59.09 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.85 kcal Atomic # 16 Polarization: -6.75 SS G_CDS: -1.23 Total: -7.98 kcal Total: -57.05 1.26 -55.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352209702.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.721 kcal (2) G-P(sol) polarization free energy of solvation -57.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds