Wall clock time and date at job start Tue Mar 31 2020 05:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50693 * 119.99802 * 2 1 4 4 C 1.52999 * 109.47004 * 125.00681 * 3 2 1 5 5 C 1.53002 * 109.47402 * 180.02562 * 4 3 2 6 6 S 1.81397 * 109.47293 * 179.97438 * 5 4 3 7 7 O 1.42105 * 110.54189 * 68.37430 * 6 5 4 8 8 O 1.42099 * 110.54203 * 291.62169 * 6 5 4 9 9 N 1.65608 * 104.44917 * 179.97438 * 6 5 4 10 10 C 1.46494 * 119.99583 * 90.00089 * 9 6 5 11 11 C 1.50703 * 109.47225 * 95.00259 * 10 9 6 12 12 H 1.07996 * 120.00066 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99842 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99597 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00371 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.47175 * 89.99893 * 15 13 11 17 17 H 1.48496 * 109.47237 * 209.99970 * 15 13 11 18 18 H 1.48502 * 109.46952 * 330.00114 * 15 13 11 19 19 C 1.46493 * 119.99916 * 269.72772 * 9 6 5 20 20 C 1.52997 * 109.47398 * 95.00006 * 19 9 6 21 21 C 1.53005 * 117.49989 * 243.61967 * 20 19 9 22 22 C 1.52997 * 60.00061 * 252.50806 * 21 20 19 23 23 H 1.08005 * 119.99924 * 179.97438 * 1 2 3 24 24 H 1.07997 * 120.00142 * 359.97438 * 1 2 3 25 25 H 1.08002 * 119.99700 * 180.02562 * 2 1 3 26 26 H 1.08996 * 109.47291 * 5.00488 * 3 2 1 27 27 H 1.09001 * 109.47238 * 245.00306 * 3 2 1 28 28 H 1.09001 * 109.47713 * 59.99658 * 4 3 2 29 29 H 1.09001 * 109.46817 * 299.99882 * 4 3 2 30 30 H 1.09001 * 109.47069 * 59.99138 * 5 4 3 31 31 H 1.09001 * 109.46935 * 299.99683 * 5 4 3 32 32 H 1.09005 * 109.47101 * 215.00381 * 10 9 6 33 33 H 1.09001 * 109.47746 * 334.99625 * 10 9 6 34 34 H 0.97008 * 119.99656 * 179.97438 * 14 13 11 35 35 H 1.09004 * 109.46868 * 214.99641 * 19 9 6 36 36 H 1.09004 * 109.47439 * 334.99764 * 19 9 6 37 37 H 1.08997 * 115.54840 * 29.32534 * 20 19 9 38 38 H 1.09002 * 117.49693 * 0.02562 * 21 20 19 39 39 H 1.09000 * 117.49634 * 145.01940 * 21 20 19 40 40 H 1.09001 * 117.50089 * 252.51283 * 22 21 20 41 41 H 1.09003 * 117.50184 * 107.48619 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1815 5 6 3.7996 2.6583 1.1820 6 16 4.9511 2.6917 2.5833 7 8 5.9957 1.7472 2.3929 8 8 4.2398 2.7598 3.8115 9 7 5.7039 4.1619 2.4645 10 6 5.1366 5.3319 3.1394 11 6 5.7968 5.5060 4.4829 12 1 6.5621 4.8142 4.8022 13 6 5.4238 6.5487 5.3043 14 7 5.9996 6.7004 6.4769 15 14 4.1006 7.7458 4.7517 16 1 2.7710 7.2514 5.1909 17 1 4.3565 9.0790 5.3537 18 1 4.1223 7.8588 3.2712 19 6 6.9404 4.2912 1.6896 20 6 6.6069 4.7573 0.2710 21 6 6.9369 3.8061 -0.8811 22 6 7.7774 5.0662 -0.6647 23 1 -0.5400 -0.9354 -0.0004 24 1 -0.5400 0.9353 0.0004 25 1 1.8500 -0.9354 -0.0004 26 1 1.3585 2.1316 0.0896 27 1 2.6212 1.4026 -0.9314 28 1 3.7400 0.5065 1.0920 29 1 2.4773 1.2354 2.1129 30 1 3.0944 3.4845 1.2718 31 1 4.3574 2.7563 0.2506 32 1 5.3086 6.2206 2.5321 33 1 4.0650 5.1879 3.2771 34 1 5.7374 7.4342 7.0547 35 1 7.5940 5.0210 2.1675 36 1 7.4444 3.3257 1.6457 37 1 5.7113 5.3713 0.1763 38 1 7.3913 2.8481 -0.6283 39 1 6.2583 3.7942 -1.7339 40 1 7.6517 5.8832 -1.3752 41 1 8.7851 4.9374 -0.2696 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489234942.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:43 Heat of formation + Delta-G solvation = -34.543336 kcal Electronic energy + Delta-G solvation = -21461.067243 eV Core-core repulsion = 18276.480279 eV Total energy + Delta-G solvation = -3184.586964 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -37.76918 -36.52664 -36.43059 -35.36623 -34.89580 -32.57986 -32.30881 -28.38720 -27.08764 -25.58427 -22.45960 -22.16302 -21.95341 -20.26575 -20.06958 -18.22797 -17.14877 -16.93013 -16.22658 -15.88779 -15.57969 -15.01026 -14.62142 -14.34576 -14.09943 -13.81335 -13.67449 -13.00148 -12.53492 -12.49341 -12.17114 -12.13311 -11.95996 -11.75728 -11.50317 -11.45663 -11.37208 -11.22827 -11.20165 -11.02036 -10.72744 -10.56718 -10.44095 -10.17143 -10.15815 -9.70232 -9.54862 -9.47193 -8.57123 -8.10359 -6.05585 -4.04125 0.76072 2.06745 3.20846 3.28703 3.32131 3.36310 3.90231 4.28526 4.39661 4.49378 4.56723 4.76680 4.86188 4.97640 5.01076 5.05180 5.10290 5.12062 5.24889 5.34942 5.50803 5.54952 5.65159 5.67921 5.68908 5.71258 5.84349 5.94652 5.99472 6.04027 6.17844 6.40633 6.44266 6.49688 6.55201 6.71105 7.07289 7.37093 7.60111 8.51986 9.00800 9.53401 11.08184 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.013121 B = 0.005810 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.424557 B = 4818.306159 C = 5900.365929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.155 4.155 3 C -0.086 4.086 4 C -0.106 4.106 5 C -0.643 4.643 6 S 2.603 3.397 7 O -0.969 6.969 8 O -0.935 6.935 9 N -0.976 5.976 10 C 0.226 3.774 11 C -0.527 4.527 12 H 0.079 0.921 13 C 0.073 3.927 14 N -0.896 5.896 15 Si 0.870 3.130 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.265 1.265 19 C 0.150 3.850 20 C -0.175 4.175 21 C -0.192 4.192 22 C -0.172 4.172 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.110 0.890 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.034 0.966 33 H 0.028 0.972 34 H 0.264 0.736 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.205 -7.703 -17.228 19.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.173 4.173 3 C -0.125 4.125 4 C -0.145 4.145 5 C -0.769 4.769 6 S 2.695 3.305 7 O -0.960 6.960 8 O -0.926 6.926 9 N -0.812 5.812 10 C 0.102 3.898 11 C -0.566 4.566 12 H 0.097 0.903 13 C -0.130 4.130 14 N -0.534 5.534 15 Si 0.697 3.303 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.190 1.190 19 C 0.023 3.977 20 C -0.195 4.195 21 C -0.229 4.229 22 C -0.210 4.210 23 H 0.115 0.885 24 H 0.114 0.886 25 H 0.128 0.872 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.126 0.874 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.052 -8.205 -16.383 19.007 hybrid contribution -1.049 1.157 -0.798 1.754 sum -6.101 -7.048 -17.181 19.547 Atomic orbital electron populations 1.23874 0.95966 1.01877 1.01523 1.23020 0.96134 0.98614 0.99565 1.20729 0.97907 0.95553 0.98274 1.21232 0.98443 0.94382 1.00446 1.30863 1.17117 1.05816 1.23150 1.05208 0.75442 0.73652 0.76196 1.93511 1.53598 1.61438 1.87405 1.93641 1.75215 1.85423 1.38277 1.57174 1.34306 1.27015 1.62729 1.19456 0.93571 0.83425 0.93314 1.21356 1.22624 1.13115 0.99466 0.90328 1.24861 0.96067 0.97376 0.94667 1.69898 1.42485 1.31543 1.09491 0.86957 0.82996 0.81014 0.79370 1.19854 1.20989 1.18976 1.20828 0.86759 1.02704 0.87366 1.23070 1.00511 1.03303 0.92602 1.23142 1.04146 0.95151 1.00493 1.22867 0.96384 0.99029 1.02716 0.88516 0.88550 0.87188 0.91084 0.90620 0.90416 0.90298 0.85321 0.85289 0.94779 0.95379 0.92579 0.88820 0.89619 0.87366 0.88397 0.89217 0.89038 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.68 14.32 29.01 0.42 -1.26 16 2 C -0.16 -1.43 9.52 -36.03 -0.34 -1.77 16 3 C -0.09 -0.84 5.66 -27.89 -0.16 -1.00 16 4 C -0.11 -1.24 5.20 -26.73 -0.14 -1.38 16 5 C -0.64 -8.22 6.18 37.16 0.23 -7.99 16 6 S 2.60 48.17 5.37 -107.50 -0.58 47.59 16 7 O -0.97 -19.19 16.52 -57.54 -0.95 -20.14 16 8 O -0.94 -21.55 16.99 -57.54 -0.98 -22.53 16 9 N -0.98 -18.99 2.70 -115.67 -0.31 -19.31 16 10 C 0.23 5.15 4.08 -5.20 -0.02 5.13 16 11 C -0.53 -14.90 9.94 -34.44 -0.34 -15.24 16 12 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 13 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 14 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 15 Si 0.87 20.89 27.47 -169.99 -4.67 16.22 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.27 -5.85 6.54 56.52 0.37 -5.48 16 19 C 0.15 2.50 5.94 -4.05 -0.02 2.48 16 20 C -0.17 -2.32 6.01 -90.62 -0.54 -2.87 16 21 C -0.19 -2.13 10.18 -26.73 -0.27 -2.40 16 22 C -0.17 -1.93 10.25 -26.73 -0.27 -2.20 16 23 H 0.10 0.71 8.06 -52.48 -0.42 0.28 16 24 H 0.10 0.79 7.84 -52.49 -0.41 0.37 16 25 H 0.11 0.91 8.06 -52.49 -0.42 0.48 16 26 H 0.07 0.66 7.79 -51.93 -0.40 0.26 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.13 1.51 8.14 -51.92 -0.42 1.09 16 31 H 0.13 1.38 8.14 -51.92 -0.42 0.95 16 32 H 0.03 0.74 7.17 -51.93 -0.37 0.36 16 33 H 0.03 0.63 7.04 -51.93 -0.37 0.27 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.09 1.66 8.11 -51.93 -0.42 1.24 16 36 H 0.09 1.39 6.54 -51.93 -0.34 1.05 16 37 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.10 1.08 8.03 -51.93 -0.42 0.67 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 354.78 15.07 5.35 5.35 Total: -1.00 -34.13 354.78 -9.91 -44.04 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.97 Total: 2.08 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: -1.57 Total: -26.50 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 0.46 Total: -46.10 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -1.93 Total: -42.67 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Atomic # 16 Polarization: 48.17 SS G_CDS: -0.58 Total: 47.59 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.13 -9.91 -44.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489234942.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.495 kcal (2) G-P(sol) polarization free energy of solvation -34.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds