Wall clock time and date at job start Tue Mar 31 2020 05:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50693 * 119.99802 * 2 1 4 4 C 1.52999 * 109.47004 * 125.00681 * 3 2 1 5 5 C 1.53002 * 109.47402 * 180.02562 * 4 3 2 6 6 S 1.81397 * 109.47293 * 179.97438 * 5 4 3 7 7 O 1.42105 * 110.54189 * 68.37430 * 6 5 4 8 8 O 1.42099 * 110.54203 * 291.62169 * 6 5 4 9 9 N 1.65608 * 104.44917 * 179.97438 * 6 5 4 10 10 C 1.46494 * 119.99583 * 90.00089 * 9 6 5 11 11 C 1.50703 * 109.47225 * 95.00259 * 10 9 6 12 12 H 1.07996 * 120.00066 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99842 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99597 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00371 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.47175 * 89.99893 * 15 13 11 17 17 H 1.48496 * 109.47237 * 209.99970 * 15 13 11 18 18 H 1.48502 * 109.46952 * 330.00114 * 15 13 11 19 19 C 1.46493 * 119.99916 * 269.72772 * 9 6 5 20 20 C 1.52997 * 109.47398 * 95.00006 * 19 9 6 21 21 C 1.53005 * 117.49989 * 243.61967 * 20 19 9 22 22 C 1.52997 * 60.00061 * 252.50806 * 21 20 19 23 23 H 1.08005 * 119.99924 * 179.97438 * 1 2 3 24 24 H 1.07997 * 120.00142 * 359.97438 * 1 2 3 25 25 H 1.08002 * 119.99700 * 180.02562 * 2 1 3 26 26 H 1.08996 * 109.47291 * 5.00488 * 3 2 1 27 27 H 1.09001 * 109.47238 * 245.00306 * 3 2 1 28 28 H 1.09001 * 109.47713 * 59.99658 * 4 3 2 29 29 H 1.09001 * 109.46817 * 299.99882 * 4 3 2 30 30 H 1.09001 * 109.47069 * 59.99138 * 5 4 3 31 31 H 1.09001 * 109.46935 * 299.99683 * 5 4 3 32 32 H 1.09005 * 109.47101 * 215.00381 * 10 9 6 33 33 H 1.09001 * 109.47746 * 334.99625 * 10 9 6 34 34 H 0.97008 * 119.99656 * 179.97438 * 14 13 11 35 35 H 1.09004 * 109.46868 * 214.99641 * 19 9 6 36 36 H 1.09004 * 109.47439 * 334.99764 * 19 9 6 37 37 H 1.08997 * 115.54840 * 29.32534 * 20 19 9 38 38 H 1.09002 * 117.49693 * 0.02562 * 21 20 19 39 39 H 1.09000 * 117.49634 * 145.01940 * 21 20 19 40 40 H 1.09001 * 117.50089 * 252.51283 * 22 21 20 41 41 H 1.09003 * 117.50184 * 107.48619 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1815 5 6 3.7996 2.6583 1.1820 6 16 4.9511 2.6917 2.5833 7 8 5.9957 1.7472 2.3929 8 8 4.2398 2.7598 3.8115 9 7 5.7039 4.1619 2.4645 10 6 5.1366 5.3319 3.1394 11 6 5.7968 5.5060 4.4829 12 1 6.5621 4.8142 4.8022 13 6 5.4238 6.5487 5.3043 14 7 5.9996 6.7004 6.4769 15 14 4.1006 7.7458 4.7517 16 1 2.7710 7.2514 5.1909 17 1 4.3565 9.0790 5.3537 18 1 4.1223 7.8588 3.2712 19 6 6.9404 4.2912 1.6896 20 6 6.6069 4.7573 0.2710 21 6 6.9369 3.8061 -0.8811 22 6 7.7774 5.0662 -0.6647 23 1 -0.5400 -0.9354 -0.0004 24 1 -0.5400 0.9353 0.0004 25 1 1.8500 -0.9354 -0.0004 26 1 1.3585 2.1316 0.0896 27 1 2.6212 1.4026 -0.9314 28 1 3.7400 0.5065 1.0920 29 1 2.4773 1.2354 2.1129 30 1 3.0944 3.4845 1.2718 31 1 4.3574 2.7563 0.2506 32 1 5.3086 6.2206 2.5321 33 1 4.0650 5.1879 3.2771 34 1 5.7374 7.4342 7.0547 35 1 7.5940 5.0210 2.1675 36 1 7.4444 3.3257 1.6457 37 1 5.7113 5.3713 0.1763 38 1 7.3913 2.8481 -0.6283 39 1 6.2583 3.7942 -1.7339 40 1 7.6517 5.8832 -1.3752 41 1 8.7851 4.9374 -0.2696 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000489234942.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:43 Heat of formation + Delta-G solvation = -57.699824 kcal Electronic energy + Delta-G solvation = -21462.071383 eV Core-core repulsion = 18276.480279 eV Total energy + Delta-G solvation = -3185.591104 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.89851 -38.09789 -37.23245 -36.91043 -36.37780 -34.38593 -33.42499 -30.19699 -27.98196 -27.07927 -24.04098 -23.13418 -23.02075 -21.37575 -20.74760 -19.70948 -19.01661 -18.57973 -17.50242 -17.33071 -16.69208 -16.13056 -16.00739 -15.62836 -15.27543 -15.08341 -14.63454 -14.48866 -14.08059 -13.87720 -13.55442 -13.33743 -13.11720 -13.06873 -12.93539 -12.91872 -12.85981 -12.42445 -12.25247 -12.19033 -12.01784 -11.94929 -11.83459 -11.70393 -11.41429 -11.17519 -10.77484 -10.72444 -10.20693 -9.67875 -8.26472 -6.31665 -0.64949 1.36986 1.41792 1.42093 1.50031 1.78912 2.37356 2.96563 3.00780 3.07452 3.24410 3.53963 3.81461 3.90135 3.98637 4.10131 4.11353 4.27320 4.33439 4.37259 4.43814 4.51804 4.62716 4.78851 4.83308 4.87584 4.91041 4.97646 5.02417 5.10094 5.11391 5.21225 5.33278 5.36892 5.44735 5.52030 5.78010 5.80610 5.90581 6.34102 6.71109 7.30581 8.91767 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.013121 B = 0.005810 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.424557 B = 4818.306159 C = 5900.365929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.170 4.170 3 C -0.082 4.082 4 C -0.117 4.117 5 C -0.598 4.598 6 S 2.586 3.414 7 O -0.996 6.996 8 O -0.996 6.996 9 N -0.985 5.985 10 C 0.234 3.766 11 C -0.539 4.539 12 H 0.021 0.979 13 C 0.003 3.997 14 N -0.953 5.953 15 Si 0.945 3.055 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.223 1.223 19 C 0.147 3.853 20 C -0.189 4.189 21 C -0.177 4.177 22 C -0.167 4.167 23 H 0.106 0.894 24 H 0.101 0.899 25 H 0.115 0.885 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.152 0.848 31 H 0.164 0.836 32 H 0.058 0.942 33 H 0.039 0.961 34 H 0.266 0.734 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.117 0.883 40 H 0.110 0.890 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.564 -7.028 -21.469 23.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.188 4.188 3 C -0.120 4.120 4 C -0.156 4.156 5 C -0.731 4.731 6 S 2.686 3.314 7 O -0.987 6.987 8 O -0.987 6.987 9 N -0.821 5.821 10 C 0.109 3.891 11 C -0.578 4.578 12 H 0.039 0.961 13 C -0.194 4.194 14 N -0.594 5.594 15 Si 0.766 3.234 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.146 1.146 19 C 0.021 3.979 20 C -0.209 4.209 21 C -0.214 4.214 22 C -0.205 4.205 23 H 0.124 0.876 24 H 0.119 0.881 25 H 0.133 0.867 26 H 0.096 0.904 27 H 0.111 0.889 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.170 0.830 31 H 0.182 0.818 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.136 0.864 38 H 0.112 0.888 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.338 -7.546 -20.604 23.136 hybrid contribution -0.251 0.777 0.526 0.971 sum -7.589 -6.769 -20.078 22.506 Atomic orbital electron populations 1.24063 0.95985 1.02655 1.00525 1.23117 0.96468 0.98807 1.00447 1.20715 0.97570 0.96066 0.97642 1.21416 0.99059 0.93677 1.01458 1.30461 1.15368 1.07692 1.19626 1.05414 0.75814 0.72962 0.77249 1.93466 1.55335 1.61836 1.88026 1.93566 1.75988 1.85898 1.43230 1.57042 1.35753 1.25936 1.63355 1.19215 0.93458 0.85595 0.90820 1.21726 1.21667 1.11939 1.02497 0.96051 1.25993 0.99072 0.99856 0.94504 1.70095 1.44975 1.32870 1.11425 0.85769 0.78717 0.77524 0.81359 1.19358 1.20680 1.14586 1.20873 0.85633 1.01949 0.89432 1.22847 1.02024 1.05449 0.90605 1.23249 1.03820 0.94632 0.99658 1.22989 0.95642 0.99973 1.01897 0.87561 0.88116 0.86659 0.90374 0.88882 0.89861 0.91152 0.82975 0.81826 0.92445 0.94344 0.92485 0.91380 0.90090 0.86429 0.88775 0.86511 0.87141 0.88884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.81 14.32 67.78 0.97 -1.83 16 2 C -0.17 -2.63 9.52 25.64 0.24 -2.38 16 3 C -0.08 -1.25 5.66 29.85 0.17 -1.08 16 4 C -0.12 -2.39 5.20 30.59 0.16 -2.23 16 5 C -0.60 -13.20 6.18 71.98 0.44 -12.75 16 6 S 2.59 96.05 5.37 -56.49 -0.30 95.74 16 7 O -1.00 -40.40 16.52 -127.65 -2.11 -42.51 16 8 O -1.00 -47.68 16.99 -127.65 -2.17 -49.85 16 9 N -0.99 -38.53 2.70 -519.86 -1.40 -39.93 16 10 C 0.23 10.60 4.08 85.64 0.35 10.94 16 11 C -0.54 -31.92 9.94 25.60 0.25 -31.66 16 12 H 0.02 1.45 8.06 -2.91 -0.02 1.42 16 13 C 0.00 0.16 5.47 84.66 0.46 0.62 16 14 N -0.95 -61.52 13.96 21.45 0.30 -61.22 16 15 Si 0.94 42.70 27.47 68.60 1.88 44.58 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.22 -8.55 6.54 99.48 0.65 -7.90 16 19 C 0.15 4.94 5.94 86.38 0.51 5.46 16 20 C -0.19 -4.54 6.01 -10.79 -0.06 -4.61 16 21 C -0.18 -3.24 10.18 30.59 0.31 -2.93 16 22 C -0.17 -3.27 10.25 30.59 0.31 -2.95 16 23 H 0.11 1.28 8.06 -2.91 -0.02 1.26 16 24 H 0.10 1.34 7.84 -2.91 -0.02 1.31 16 25 H 0.12 1.61 8.06 -2.91 -0.02 1.59 16 26 H 0.08 1.11 7.79 -2.39 -0.02 1.09 16 27 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.15 2.84 8.14 -2.39 -0.02 2.82 16 31 H 0.16 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.06 2.34 7.17 -2.38 -0.02 2.32 16 33 H 0.04 1.67 7.04 -2.39 -0.02 1.66 16 34 H 0.27 15.93 8.31 -92.70 -0.77 15.16 16 35 H 0.07 2.55 8.11 -2.39 -0.02 2.53 16 36 H 0.08 2.72 6.54 -2.39 -0.02 2.71 16 37 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.09 1.82 8.03 -2.39 -0.02 1.80 16 39 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -80.43 354.78 1.25 -79.19 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.92 Total: 19.41 kcal Atomic # 6 Polarization: -49.54 SS G_CDS: 4.13 Total: -45.41 kcal Atomic # 7 Polarization: -100.05 SS G_CDS: -1.10 Total: -101.16 kcal Atomic # 8 Polarization: -88.08 SS G_CDS: -4.28 Total: -92.36 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.88 Total: 44.58 kcal Atomic # 16 Polarization: 96.05 SS G_CDS: -0.30 Total: 95.74 kcal Total: -80.43 1.25 -79.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489234942.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.486 kcal (2) G-P(sol) polarization free energy of solvation -80.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds