Wall clock time and date at job start Tue Mar 31 2020 05:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53506 * 114.20356 * 2 1 4 4 N 1.47067 * 87.98297 * 139.65301 * 3 2 1 5 5 C 1.34782 * 136.05886 * 152.84726 * 4 3 2 6 6 O 1.21722 * 119.99458 * 359.97438 * 5 4 3 7 7 C 1.46248 * 120.00180 * 179.97438 * 5 4 3 8 8 C 1.35027 * 120.00105 * 186.78450 * 7 5 4 9 9 C 1.46956 * 119.99493 * 11.38329 * 8 7 5 10 10 C 1.40024 * 120.10553 * 43.46398 * 9 8 7 11 11 C 1.37591 * 119.90044 * 179.97438 * 10 9 8 12 12 C 1.39179 * 120.10483 * 0.27046 * 11 10 9 13 13 O 1.35565 * 119.90345 * 179.70848 * 12 11 10 14 14 C 1.34788 * 116.99826 * 5.78408 * 13 12 11 15 15 H 1.07996 * 119.99754 * 5.29806 * 14 13 12 16 16 C 1.38713 * 119.99829 * 185.29656 * 14 13 12 17 17 N 1.31507 * 120.00360 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99977 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46941 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46983 * 120.00066 * 18 16 14 21 21 H 1.48500 * 109.47332 * 240.00066 * 18 16 14 22 22 C 1.39178 * 120.19674 * 359.44916 * 12 11 10 23 23 C 1.37599 * 120.10419 * 0.54990 * 22 12 11 24 24 C 1.47073 * 87.88732 * 333.10220 * 4 3 2 25 25 H 1.09008 * 109.47078 * 59.99825 * 1 2 3 26 26 H 1.08998 * 109.47169 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47536 * 300.00205 * 1 2 3 28 28 H 1.08996 * 113.41952 * 226.80665 * 2 1 3 29 29 H 1.08998 * 113.46507 * 24.87590 * 3 2 1 30 30 H 1.08994 * 113.46958 * 254.43159 * 3 2 1 31 31 H 1.07996 * 120.00319 * 6.78591 * 7 5 4 32 32 H 1.08000 * 120.00063 * 191.38340 * 8 7 5 33 33 H 1.08007 * 120.04800 * 359.94509 * 10 9 8 34 34 H 1.08006 * 119.94944 * 179.97438 * 11 10 9 35 35 H 0.97001 * 120.00270 * 179.97438 * 17 16 14 36 36 H 1.07997 * 119.95032 * 180.27818 * 22 12 11 37 37 H 1.08004 * 120.05220 * 179.74331 * 23 22 12 38 38 H 1.08998 * 113.46774 * 141.67970 * 24 4 3 39 39 H 1.09000 * 113.46209 * 272.11955 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1593 1.4001 0.0000 4 7 3.1598 0.8937 0.9515 5 6 4.4334 1.1956 1.2731 6 8 5.0087 2.0998 0.6961 7 6 5.1240 0.4368 2.3153 8 6 6.3480 0.8242 2.7337 9 6 6.8807 2.1340 2.3335 10 6 6.0582 3.2667 2.3668 11 6 6.5615 4.4911 1.9917 12 6 7.8844 4.6039 1.5742 13 8 8.3743 5.8112 1.1999 14 6 7.5679 6.8780 1.3688 15 1 6.6151 6.7616 1.8639 16 6 7.9617 8.1252 0.9068 17 7 9.1216 8.2668 0.3035 18 14 6.8443 9.6037 1.1414 19 1 5.6061 9.1818 1.8442 20 1 7.5468 10.6314 1.9511 21 1 6.4922 10.1734 -0.1840 22 6 8.7073 3.4819 1.5450 23 6 8.2127 2.2533 1.9184 24 6 2.1612 -0.0915 1.3933 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.9632 -0.6846 -0.7292 29 1 1.5099 2.1679 0.4206 30 1 2.5820 1.6860 -0.9631 31 1 4.6550 -0.4333 2.7504 32 1 6.9354 0.1714 3.3624 33 1 5.0301 3.1793 2.6860 34 1 5.9276 5.3653 2.0167 35 1 9.3968 9.1389 -0.0199 36 1 9.7345 3.5748 1.2247 37 1 8.8509 1.3824 1.8914 38 1 2.5855 -1.0713 1.6125 39 1 1.5123 0.2750 2.1888 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492708454.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:31 Heat of formation + Delta-G solvation = 30.705332 kcal Electronic energy + Delta-G solvation = -21768.721270 eV Core-core repulsion = 18451.519750 eV Total energy + Delta-G solvation = -3317.201520 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.42699 -39.03652 -37.99018 -36.22531 -33.01621 -32.15118 -31.70538 -30.05721 -28.41444 -26.74770 -26.19165 -25.24460 -22.89851 -21.72063 -21.04436 -20.00903 -18.36118 -17.95725 -17.33249 -16.64053 -15.95093 -15.59756 -14.83188 -14.47746 -14.27995 -14.16983 -13.68790 -13.60279 -13.40283 -13.22167 -13.03575 -12.72813 -12.59777 -12.26014 -12.15103 -11.81218 -11.66187 -11.59527 -11.28526 -10.93950 -10.74165 -10.60774 -10.54451 -10.39285 -9.47066 -9.34596 -9.18099 -8.69143 -8.61686 -7.88073 -6.85015 -6.44149 -3.99356 1.26218 2.43140 2.72340 2.95176 3.15150 3.15968 3.21516 3.63395 3.99013 4.01276 4.59189 4.68132 4.72212 4.93990 5.01608 5.14708 5.19821 5.25849 5.28281 5.33672 5.40721 5.48387 5.55906 5.62058 5.71544 5.77823 5.81323 5.91850 6.03736 6.27645 6.36849 6.48587 6.67769 6.80601 7.06057 7.15801 7.35193 7.50538 7.53386 7.87167 7.94591 8.02971 8.53076 9.01875 9.73646 10.73921 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.017769 B = 0.003852 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.423976 B = 7266.302111 C = 8501.290254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.132 4.132 3 C 0.107 3.893 4 N -0.652 5.652 5 C 0.568 3.432 6 O -0.508 6.508 7 C -0.260 4.260 8 C 0.027 3.973 9 C -0.192 4.192 10 C 0.016 3.984 11 C -0.243 4.243 12 C 0.172 3.828 13 O -0.173 6.173 14 C -0.388 4.388 15 H 0.093 0.907 16 C 0.039 3.961 17 N -0.860 5.860 18 Si 0.941 3.059 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.210 4.210 23 C -0.044 4.044 24 C 0.105 3.895 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.102 0.898 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.123 0.877 33 H 0.096 0.904 34 H 0.124 0.876 35 H 0.270 0.730 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.074 0.926 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.971 -17.137 3.252 22.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.151 4.151 3 C -0.016 4.016 4 N -0.390 5.390 5 C 0.361 3.639 6 O -0.384 6.384 7 C -0.281 4.281 8 C 0.007 3.993 9 C -0.193 4.193 10 C -0.003 4.003 11 C -0.262 4.262 12 C 0.117 3.883 13 O -0.075 6.075 14 C -0.464 4.464 15 H 0.111 0.889 16 C -0.166 4.166 17 N -0.495 5.495 18 Si 0.766 3.234 19 H -0.191 1.191 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.229 4.229 23 C -0.063 4.063 24 C -0.019 4.019 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.120 0.880 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.114 0.886 34 H 0.142 0.858 35 H 0.080 0.920 36 H 0.134 0.866 37 H 0.129 0.871 38 H 0.093 0.907 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.039 -16.284 2.791 21.681 hybrid contribution -0.776 0.617 0.095 0.996 sum -14.815 -15.667 2.886 21.754 Atomic orbital electron populations 1.21644 0.93491 1.02224 1.02434 1.22956 0.96111 0.98063 0.97924 1.22947 0.88321 0.96057 0.94321 1.49605 1.10497 1.37508 1.41353 1.18094 0.78927 0.83144 0.83694 1.91011 1.63973 1.30046 1.53394 1.22496 0.98663 1.03935 1.03003 1.22337 0.92595 0.93118 0.91210 1.18303 0.94810 0.92259 1.13885 1.20552 0.95799 0.91396 0.92542 1.20960 0.96232 0.98254 1.10786 1.19544 0.91496 0.86638 0.90655 1.83917 1.41293 1.11641 1.70658 1.21438 1.01948 0.84454 1.38599 0.88921 1.25320 0.97015 0.98282 0.95961 1.70030 1.19304 1.24655 1.35484 0.85637 0.79303 0.80037 0.78413 1.19056 1.20085 1.20093 1.19998 0.99810 0.91131 1.11982 1.20630 0.93443 0.95771 0.96438 1.22985 0.88846 0.93359 0.96694 0.91891 0.92082 0.92179 0.88012 0.90146 0.90597 0.86344 0.85902 0.88635 0.85833 0.92015 0.86595 0.87112 0.90742 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 9.79 37.16 0.36 -0.38 16 2 C -0.13 -0.97 4.69 -90.24 -0.42 -1.40 16 3 C 0.11 1.15 8.20 -8.49 -0.07 1.08 16 4 N -0.65 -8.50 3.69 -187.06 -0.69 -9.19 16 5 C 0.57 9.49 7.02 -13.04 -0.09 9.40 16 6 O -0.51 -10.96 12.95 5.17 0.07 -10.89 16 7 C -0.26 -3.64 9.74 -37.51 -0.37 -4.01 16 8 C 0.03 0.40 9.80 -37.19 -0.36 0.04 16 9 C -0.19 -3.71 4.54 -105.03 -0.48 -4.18 16 10 C 0.02 0.34 6.60 -39.15 -0.26 0.08 16 11 C -0.24 -5.91 9.11 -39.47 -0.36 -6.27 16 12 C 0.17 4.48 6.66 -38.88 -0.26 4.22 16 13 O -0.17 -5.18 9.74 0.74 0.01 -5.17 16 14 C -0.39 -11.33 9.44 30.91 0.29 -11.03 16 15 H 0.09 2.54 5.27 -52.49 -0.28 2.26 16 16 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 17 N -0.86 -25.85 13.67 55.48 0.76 -25.09 16 18 Si 0.94 21.16 29.55 -169.99 -5.02 16.13 16 19 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 C -0.21 -4.81 9.97 -39.47 -0.39 -5.20 16 23 C -0.04 -0.87 9.78 -39.14 -0.38 -1.25 16 24 C 0.10 0.87 7.89 -8.63 -0.07 0.80 16 25 H 0.06 0.33 8.14 -51.92 -0.42 -0.10 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.30 7.90 -51.93 -0.41 -0.11 16 28 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.12 1.25 7.98 -52.49 -0.42 0.84 16 32 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.10 1.92 7.01 -52.48 -0.37 1.55 16 34 H 0.12 3.03 5.69 -52.48 -0.30 2.73 16 35 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.12 2.53 8.06 -52.49 -0.42 2.10 16 37 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.57 7.94 -51.93 -0.41 0.16 16 LS Contribution 332.74 15.07 5.01 5.01 Total: -1.00 -35.03 332.74 -7.94 -42.98 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.12 Total: 3.32 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -2.95 Total: -17.11 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.07 Total: -34.28 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: 0.07 Total: -16.06 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.03 -7.94 -42.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492708454.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.682 kcal (2) G-P(sol) polarization free energy of solvation -35.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds