Wall clock time and date at job start Tue Mar 31 2020 06:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47047 * 2 1 4 4 H 1.08999 * 109.47367 * 305.69786 * 3 2 1 5 5 C 1.50700 * 109.47481 * 185.69361 * 3 2 1 6 6 H 1.08005 * 120.00207 * 275.01103 * 5 3 2 7 7 C 1.37883 * 119.99724 * 95.00208 * 5 3 2 8 8 N 1.31513 * 119.99750 * 184.83107 * 7 5 3 9 9 Si 1.86794 * 120.00199 * 4.83666 * 7 5 3 10 10 H 1.48506 * 109.47231 * 84.85641 * 9 7 5 11 11 H 1.48496 * 109.47318 * 204.85861 * 9 7 5 12 12 H 1.48501 * 109.47379 * 324.86059 * 9 7 5 13 13 N 1.46500 * 109.46903 * 65.69654 * 3 2 1 14 14 C 1.34782 * 120.00207 * 274.99523 * 13 3 2 15 15 O 1.21277 * 119.99443 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00029 * 179.97438 * 14 13 3 17 17 C 1.50699 * 109.46619 * 180.02562 * 16 14 13 18 18 C 1.33994 * 126.91191 * 265.02067 * 17 16 14 19 19 O 1.34443 * 110.15741 * 179.97438 * 18 17 16 20 20 C 1.34807 * 110.88934 * 0.02562 * 19 18 17 21 21 C 1.38941 * 133.49139 * 180.02562 * 20 19 18 22 22 C 1.37846 * 119.81823 * 179.97438 * 21 20 19 23 23 C 1.38749 * 120.68263 * 0.02562 * 22 21 20 24 24 C 1.36737 * 120.41878 * 359.97416 * 23 22 21 25 25 C 1.39409 * 119.71351 * 359.76205 * 24 23 22 26 26 H 1.08999 * 109.47155 * 299.99695 * 1 2 3 27 27 H 1.09007 * 109.47018 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47534 * 60.00073 * 1 2 3 29 29 H 1.09001 * 109.47409 * 120.00702 * 2 1 3 30 30 H 1.09008 * 109.46643 * 240.00581 * 2 1 3 31 31 H 0.97001 * 120.00197 * 180.02562 * 8 7 5 32 32 H 0.97003 * 120.00313 * 95.00035 * 13 3 2 33 33 H 1.09000 * 109.47346 * 300.00371 * 16 14 13 34 34 H 1.08993 * 109.47151 * 60.00582 * 16 14 13 35 35 H 1.08001 * 124.91722 * 359.96413 * 18 17 16 36 36 H 1.08007 * 120.09162 * 359.97438 * 21 20 19 37 37 H 1.08001 * 119.65851 * 179.97438 * 22 21 20 38 38 H 1.07993 * 119.78822 * 179.97438 * 23 22 21 39 39 H 1.07995 * 120.14093 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5958 1.9849 -0.8345 5 6 3.5404 1.4449 -0.1410 6 1 4.1651 1.3333 0.7330 7 6 4.1156 1.5894 -1.3857 8 7 5.4204 1.4966 -1.5219 9 14 3.0417 1.9172 -2.8785 10 1 2.7752 3.3742 -2.9863 11 1 3.7400 1.4498 -4.1029 12 1 1.7561 1.1884 -2.7332 13 7 1.6668 2.0923 1.2588 14 6 0.4509 2.6588 1.3902 15 8 -0.3344 2.6301 0.4665 16 6 0.0668 3.3267 2.6854 17 6 -1.3325 3.8747 2.5721 18 6 -1.6828 5.1241 2.2379 19 8 -3.0217 5.2460 2.2397 20 6 -3.6100 4.0807 2.5761 21 6 -4.9339 3.6843 2.7197 22 6 -5.2254 2.3872 3.0841 23 6 -4.2092 1.4700 3.3105 24 6 -2.8998 1.8399 3.1746 25 6 -2.5859 3.1459 2.8013 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 5.8251 1.5986 -2.3975 32 1 2.2947 2.1150 1.9978 33 1 0.1071 2.5987 3.4956 34 1 0.7605 4.1411 2.8938 35 1 -0.9900 5.9182 2.0016 36 1 -5.7325 4.3905 2.5462 37 1 -6.2554 2.0820 3.1954 38 1 -4.4540 0.4576 3.5958 39 1 -2.1125 1.1222 3.3514 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000556976032.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:56 Heat of formation + Delta-G solvation = -18.304917 kcal Electronic energy + Delta-G solvation = -22448.608856 eV Core-core repulsion = 19129.282092 eV Total energy + Delta-G solvation = -3319.326764 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.41452 -39.10427 -37.85371 -35.31013 -33.70360 -32.36099 -31.54548 -30.54475 -29.80607 -28.16608 -26.92753 -23.33034 -22.82161 -22.29697 -21.16190 -19.74365 -19.47917 -17.43145 -17.30551 -16.94790 -16.20197 -15.79096 -15.66602 -15.48444 -14.83665 -14.19548 -14.05619 -13.80426 -13.38733 -13.15290 -12.77278 -12.72727 -12.30875 -12.29165 -12.03508 -11.89479 -11.81938 -11.45308 -10.95555 -10.87651 -10.68697 -10.65622 -10.00483 -9.99239 -9.85196 -9.22052 -9.07448 -8.71302 -8.63052 -8.10764 -7.98404 -6.25147 -4.28588 0.92630 1.35929 2.35515 2.83092 3.24707 3.31945 3.33477 3.41371 3.69518 4.14115 4.31533 4.47238 4.58687 4.88234 4.92839 5.08720 5.11767 5.30222 5.37172 5.46602 5.55850 5.57049 5.67913 5.92914 6.05674 6.09214 6.21460 6.24739 6.26709 6.41726 6.44846 6.62532 6.65462 6.79068 6.98665 7.01434 7.18326 7.29054 7.36789 7.58298 8.14075 8.58390 8.76070 9.02788 9.37597 10.86570 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.025441 B = 0.004221 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.325442 B = 6632.361988 C = 6939.449518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 C 0.237 3.763 4 H 0.050 0.950 5 C -0.531 4.531 6 H 0.078 0.922 7 C 0.082 3.918 8 N -0.889 5.889 9 Si 0.873 3.127 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.705 5.705 14 C 0.499 3.501 15 O -0.543 6.543 16 C -0.075 4.075 17 C -0.147 4.147 18 C 0.012 3.988 19 O -0.195 6.195 20 C 0.049 3.951 21 C -0.110 4.110 22 C -0.099 4.099 23 C -0.139 4.139 24 C -0.064 4.064 25 C -0.109 4.109 26 H 0.050 0.950 27 H 0.029 0.971 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.268 0.732 32 H 0.392 0.608 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.206 0.794 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.265 3.452 11.416 20.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C 0.135 3.865 4 H 0.068 0.932 5 C -0.569 4.569 6 H 0.096 0.904 7 C -0.123 4.123 8 N -0.525 5.525 9 Si 0.699 3.301 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.184 1.184 13 N -0.354 5.354 14 C 0.284 3.716 15 O -0.422 6.422 16 C -0.115 4.115 17 C -0.149 4.149 18 C -0.052 4.052 19 O -0.096 6.096 20 C 0.002 3.998 21 C -0.128 4.128 22 C -0.117 4.117 23 C -0.157 4.157 24 C -0.083 4.083 25 C -0.110 4.110 26 H 0.069 0.931 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.226 0.774 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.223 0.777 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.790 3.655 10.529 20.153 hybrid contribution 0.150 0.086 -0.571 0.596 sum -16.641 3.741 9.958 19.750 Atomic orbital electron populations 1.21893 0.97386 0.98720 1.02072 1.22070 0.93646 0.99529 1.01131 1.19141 0.95386 0.89054 0.82925 0.93219 1.21025 0.88744 1.51688 0.95423 0.90367 1.24932 0.94845 0.93689 0.98784 1.69881 1.09764 1.48384 1.24505 0.86913 0.81288 0.79614 0.82251 1.19914 1.21217 1.18376 1.46600 1.14439 1.56182 1.18192 1.20369 0.82718 0.79509 0.89035 1.90682 1.50686 1.59501 1.41316 1.20076 0.92130 1.01472 0.97844 1.20489 0.93804 0.93320 1.07246 1.23678 0.81029 0.98830 1.01703 1.83982 1.19596 1.33061 1.72957 1.19605 0.94408 0.84166 1.01644 1.19884 0.91542 0.96929 1.04466 1.20869 0.99547 0.92001 0.99296 1.20739 0.92369 0.99901 1.02715 1.20290 0.96793 0.93816 0.97354 1.19742 0.92297 0.95024 1.03936 0.93118 0.95224 0.93214 0.93067 0.92207 0.92244 0.77442 0.88383 0.88088 0.77709 0.85336 0.85071 0.85552 0.85786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.53 37.16 0.32 -2.57 16 2 C -0.12 -2.69 5.59 -26.73 -0.15 -2.84 16 3 C 0.24 5.51 1.89 -69.09 -0.13 5.38 16 4 H 0.05 1.28 4.73 -51.93 -0.25 1.03 16 5 C -0.53 -14.02 9.05 -34.44 -0.31 -14.33 16 6 H 0.08 2.17 8.06 -52.48 -0.42 1.75 16 7 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 8 N -0.89 -25.97 13.96 55.43 0.77 -25.20 16 9 Si 0.87 21.56 26.99 -169.99 -4.59 16.97 16 10 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.26 -6.36 6.82 56.52 0.39 -5.97 16 13 N -0.71 -13.52 5.03 -54.94 -0.28 -13.79 16 14 C 0.50 9.08 6.43 -10.98 -0.07 9.01 16 15 O -0.54 -11.98 13.17 5.56 0.07 -11.90 16 16 C -0.08 -1.00 6.25 -29.04 -0.18 -1.18 16 17 C -0.15 -2.12 4.85 -102.66 -0.50 -2.61 16 18 C 0.01 0.16 11.89 29.24 0.35 0.51 16 19 O -0.19 -2.80 10.58 3.93 0.04 -2.76 16 20 C 0.05 0.71 7.42 -38.48 -0.29 0.42 16 21 C -0.11 -1.29 10.07 -39.46 -0.40 -1.68 16 22 C -0.10 -1.02 10.01 -39.54 -0.40 -1.42 16 23 C -0.14 -1.54 9.98 -39.94 -0.40 -1.94 16 24 C -0.06 -0.85 10.05 -39.69 -0.40 -1.25 16 25 C -0.11 -1.62 6.38 -105.16 -0.67 -2.29 16 26 H 0.05 1.00 5.63 -51.93 -0.29 0.71 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 1.08 7.89 -51.93 -0.41 0.67 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 1.34 8.14 -51.92 -0.42 0.92 16 31 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.39 6.53 8.59 -40.82 -0.35 6.18 16 33 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.21 1.97 8.06 -52.49 -0.42 1.54 16 36 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 37 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 38 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 328.82 15.07 4.96 4.96 Total: -1.00 -32.89 328.82 -7.44 -40.33 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -5.10 Total: 6.01 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -3.32 Total: -14.62 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.50 Total: -38.99 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: 0.11 Total: -14.66 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.59 Total: 16.97 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.89 -7.44 -40.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556976032.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.028 kcal (2) G-P(sol) polarization free energy of solvation -32.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds