Wall clock time and date at job start Tue Mar 31 2020 05:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.55488 * 2 1 4 4 C 1.53293 * 109.51058 * 239.87275 * 2 1 3 5 5 N 1.47155 * 108.38566 * 292.37567 * 4 2 1 6 6 C 1.34776 * 120.97967 * 129.48453 * 5 4 2 7 7 O 1.21283 * 120.00179 * 184.75152 * 6 5 4 8 8 C 1.50706 * 120.00067 * 4.74772 * 6 5 4 9 9 S 1.81004 * 109.47014 * 179.97438 * 8 6 5 10 10 C 1.76196 * 99.99753 * 180.02562 * 9 8 6 11 11 H 1.08003 * 120.00051 * 359.97438 * 10 9 8 12 12 C 1.38803 * 120.00017 * 180.02562 * 10 9 8 13 13 N 1.31633 * 119.99621 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00137 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46912 * 60.00348 * 14 12 10 16 16 H 1.48501 * 109.47028 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47272 * 300.00482 * 14 12 10 18 18 C 1.47146 * 118.03664 * 309.47263 * 5 4 2 19 19 C 1.53004 * 109.67648 * 290.80334 * 18 5 4 20 20 C 1.52998 * 109.68118 * 170.25783 * 18 5 4 21 21 C 1.53292 * 108.38884 * 50.53058 * 18 5 4 22 22 O 1.42963 * 109.22033 * 307.69523 * 21 18 5 23 23 H 1.09007 * 109.47329 * 299.87697 * 1 2 3 24 24 H 1.09002 * 109.47127 * 59.87176 * 1 2 3 25 25 H 1.08998 * 109.47335 * 179.87605 * 1 2 3 26 26 H 1.08998 * 109.46961 * 180.12745 * 3 2 1 27 27 H 1.09000 * 109.47348 * 300.12550 * 3 2 1 28 28 H 1.09003 * 109.47367 * 60.12599 * 3 2 1 29 29 H 1.08994 * 109.68525 * 52.10316 * 4 2 1 30 30 H 1.09006 * 109.68289 * 172.61728 * 4 2 1 31 31 H 1.09000 * 109.47382 * 300.00163 * 8 6 5 32 32 H 1.09006 * 109.46406 * 60.00196 * 8 6 5 33 33 H 0.97001 * 119.99355 * 179.97438 * 13 12 10 34 34 H 1.09002 * 109.46582 * 178.92781 * 19 18 5 35 35 H 1.08993 * 109.47237 * 298.92799 * 19 18 5 36 36 H 1.08995 * 109.47260 * 58.93469 * 19 18 5 37 37 H 1.08998 * 109.47000 * 307.15171 * 20 18 5 38 38 H 1.09003 * 109.47523 * 67.15527 * 20 18 5 39 39 H 1.08999 * 109.47077 * 187.15730 * 20 18 5 40 40 H 1.08991 * 109.51299 * 67.62405 * 21 18 5 41 41 H 1.08998 * 109.51088 * 187.77892 * 21 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4417 0.0000 4 6 2.0420 -0.7252 -1.2497 5 7 1.6959 -2.1508 -1.1335 6 6 1.0715 -2.7972 -2.1379 7 8 0.7175 -3.9479 -1.9910 8 6 0.8130 -2.0901 -3.4435 9 16 -0.0338 -3.2147 -4.5813 10 6 -0.2048 -2.1604 -5.9826 11 1 0.1708 -1.1484 -5.9461 12 6 -0.8231 -2.6300 -7.1331 13 7 -1.2821 -3.8630 -7.1771 14 14 -1.0051 -1.5121 -8.6185 15 1 0.3388 -1.0834 -9.0830 16 1 -1.6953 -2.2465 -9.7092 17 1 -1.8037 -0.3175 -8.2442 18 6 2.0520 -2.8497 0.1114 19 6 3.5723 -2.9950 0.2039 20 6 1.3994 -4.2334 0.1302 21 6 1.5395 -2.0210 1.2948 22 8 2.0075 -0.6764 1.1655 23 1 -0.3634 0.5119 0.8911 24 1 -0.3633 0.5158 -0.8888 25 1 -0.3634 -1.0276 -0.0022 26 1 3.1321 1.4401 -0.0023 27 1 1.6777 1.9568 -0.8888 28 1 1.6814 1.9555 0.8911 29 1 1.5704 -0.3042 -2.1376 30 1 3.1240 -0.6142 -1.3212 31 1 0.1885 -1.2148 -3.2652 32 1 1.7612 -1.7772 -3.8809 33 1 -1.7145 -4.1910 -7.9810 34 1 3.8333 -3.4961 1.1361 35 1 3.9329 -3.5846 -0.6388 36 1 4.0337 -2.0078 0.1806 37 1 0.3298 -4.1332 -0.0536 38 1 1.8448 -4.8559 -0.6459 39 1 1.5588 -4.6971 1.1037 40 1 0.4496 -2.0284 1.2995 41 1 1.9113 -2.4479 2.2263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609646517.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:48 Heat of formation + Delta-G solvation = -69.769960 kcal Electronic energy + Delta-G solvation = -22095.693551 eV Core-core repulsion = 18909.579047 eV Total energy + Delta-G solvation = -3186.114505 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.95537 -38.44451 -35.38335 -34.48166 -32.44569 -31.82542 -28.77383 -27.98683 -27.31336 -26.12228 -25.77738 -25.46796 -21.77381 -20.24949 -18.30346 -17.65169 -16.75378 -16.37849 -15.94979 -15.66317 -15.01691 -14.87729 -14.81356 -14.08273 -13.94541 -13.56133 -13.29771 -12.76360 -12.59431 -12.56256 -12.51336 -12.26753 -12.08342 -12.04534 -11.98440 -11.64946 -11.56194 -11.28026 -11.05833 -11.03606 -11.01780 -10.78327 -10.55602 -10.04354 -9.82826 -9.07514 -8.75127 -8.32603 -8.25221 -6.51885 -6.23286 -3.93963 2.82391 3.02592 3.21946 3.23100 3.27449 3.52741 3.55880 4.18760 4.46591 4.61510 4.68262 4.74072 4.90320 5.00115 5.11767 5.12486 5.22733 5.37809 5.39421 5.44265 5.51564 5.55287 5.59903 5.63244 5.66058 5.75917 5.79266 5.84423 5.89551 5.96873 6.04729 6.07960 6.10975 6.28754 6.48659 6.78914 7.04816 7.55963 7.57952 8.33071 8.56855 9.21949 10.84066 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.023204 B = 0.004621 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.413071 B = 6057.294862 C = 6830.385355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.099 3.901 3 C -0.136 4.136 4 C 0.087 3.913 5 N -0.613 5.613 6 C 0.537 3.463 7 O -0.507 6.507 8 C -0.152 4.152 9 S -0.059 6.059 10 C -0.536 4.536 11 H 0.071 0.929 12 C 0.075 3.925 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.137 3.863 19 C -0.151 4.151 20 C -0.131 4.131 21 C 0.055 3.945 22 O -0.370 6.370 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.269 0.731 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.041 0.959 40 H 0.060 0.940 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.466 8.299 16.503 19.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.059 3.941 3 C -0.194 4.194 4 C -0.037 4.037 5 N -0.350 5.350 6 C 0.325 3.675 7 O -0.382 6.382 8 C -0.303 4.303 9 S 0.168 5.832 10 C -0.685 4.685 11 H 0.089 0.911 12 C -0.135 4.135 13 N -0.503 5.503 14 Si 0.744 3.256 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 C 0.052 3.948 19 C -0.209 4.209 20 C -0.188 4.188 21 C -0.022 4.022 22 O -0.289 6.289 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.955 6.518 16.725 19.250 hybrid contribution 0.171 2.001 -1.379 2.436 sum 7.126 8.519 15.346 18.943 Atomic orbital electron populations 1.22389 0.95055 1.03190 1.02910 1.21873 0.93854 0.92894 0.85522 1.21723 1.01965 0.92743 1.02943 1.22407 1.01067 0.81169 0.99078 1.48214 1.60519 1.10127 1.16122 1.20281 0.76302 0.86716 0.84179 1.90738 1.49525 1.17143 1.80745 1.23608 1.05009 1.04669 0.96996 1.85364 1.73470 1.16738 1.07623 1.22816 1.45034 1.00742 0.99858 0.91055 1.24981 0.94642 0.95517 0.98339 1.70008 1.36390 1.15049 1.28834 0.86237 0.78505 0.80030 0.80813 1.19927 1.20783 1.19941 1.21300 0.95541 0.93789 0.84175 1.22073 0.94417 1.02236 1.02153 1.22171 1.02476 0.93576 1.00552 1.23070 0.99170 0.82172 0.97796 1.87959 1.72314 1.25319 1.43320 0.91748 0.91125 0.91691 0.91627 0.90684 0.91467 0.88539 0.90811 0.89539 0.89427 0.92121 0.91673 0.92197 0.92034 0.90870 0.90194 0.93995 0.92205 0.88101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 8.09 37.16 0.30 -1.65 16 2 C 0.10 1.05 1.11 -90.47 -0.10 0.95 16 3 C -0.14 -1.14 8.85 37.16 0.33 -0.81 16 4 C 0.09 1.03 4.79 -3.53 -0.02 1.01 16 5 N -0.61 -8.91 2.23 -157.51 -0.35 -9.26 16 6 C 0.54 10.03 7.62 -10.98 -0.08 9.95 16 7 O -0.51 -10.94 11.42 5.56 0.06 -10.88 16 8 C -0.15 -3.07 4.60 36.01 0.17 -2.91 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 10 C -0.54 -15.15 9.50 30.94 0.29 -14.86 16 11 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 12 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 13 N -0.87 -26.02 13.22 55.49 0.73 -25.29 16 14 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 15 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 C 0.14 1.76 1.04 -131.31 -0.14 1.62 16 19 C -0.15 -1.72 8.54 37.16 0.32 -1.40 16 20 C -0.13 -1.85 6.92 37.16 0.26 -1.59 16 21 C 0.06 0.62 5.27 37.31 0.20 0.82 16 22 O -0.37 -4.30 9.87 -35.23 -0.35 -4.65 16 23 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 24 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.83 6.11 -51.93 -0.32 0.51 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.10 1.13 6.07 -51.93 -0.32 0.82 16 30 H 0.07 0.81 7.64 -51.93 -0.40 0.42 16 31 H 0.09 1.62 7.46 -51.92 -0.39 1.23 16 32 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 33 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.69 7.20 -51.93 -0.37 0.31 16 37 H 0.07 1.19 6.79 -51.93 -0.35 0.84 16 38 H 0.08 1.32 6.79 -51.93 -0.35 0.97 16 39 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.70 6.25 -51.93 -0.32 0.37 16 41 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 331.87 15.07 5.00 5.00 Total: -1.00 -32.44 331.87 -7.30 -39.74 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -6.59 Total: -0.26 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 1.43 Total: -6.84 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.38 Total: -34.55 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.28 Total: -15.53 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.44 -7.30 -39.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609646517.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.034 kcal (2) G-P(sol) polarization free energy of solvation -32.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds