Wall clock time and date at job start Tue Mar 31 2020 05:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47007 * 2 1 4 4 C 1.52996 * 109.47263 * 240.00261 * 2 1 3 5 5 N 1.46896 * 109.47284 * 119.99879 * 2 1 3 6 6 C 1.47957 * 111.00316 * 319.06539 * 5 2 1 7 7 C 1.53934 * 86.18305 * 137.58243 * 6 5 2 8 8 C 1.47955 * 110.99897 * 58.42604 * 5 2 1 9 9 H 1.09001 * 113.86054 * 336.74453 * 8 5 2 10 10 C 1.52999 * 113.76160 * 108.10153 * 8 5 2 11 11 O 1.45194 * 109.47320 * 61.06518 * 10 8 5 12 12 C 1.34229 * 117.00250 * 180.02562 * 11 10 8 13 13 O 1.20832 * 119.99965 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00298 * 180.02562 * 12 11 10 15 15 S 1.80999 * 109.47254 * 180.02562 * 14 12 11 16 16 C 1.76197 * 100.00112 * 180.02562 * 15 14 12 17 17 H 1.08004 * 119.99818 * 359.71908 * 16 15 14 18 18 C 1.38798 * 120.00144 * 179.97438 * 16 15 14 19 19 N 1.31629 * 120.00206 * 359.72500 * 18 16 15 20 20 Si 1.86795 * 120.00110 * 179.72123 * 18 16 15 21 21 H 1.48498 * 109.47217 * 90.00175 * 20 18 16 22 22 H 1.48504 * 109.47610 * 210.00197 * 20 18 16 23 23 H 1.48505 * 109.47401 * 330.00363 * 20 18 16 24 24 H 1.08998 * 109.47381 * 309.27315 * 1 2 3 25 25 H 1.08995 * 109.47117 * 69.27279 * 1 2 3 26 26 H 1.08998 * 109.47251 * 189.27345 * 1 2 3 27 27 H 1.09004 * 109.47055 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47469 * 300.00313 * 3 2 1 29 29 H 1.08999 * 109.47386 * 60.00089 * 3 2 1 30 30 H 1.08997 * 109.46930 * 299.99761 * 4 2 1 31 31 H 1.08999 * 109.47557 * 59.99744 * 4 2 1 32 32 H 1.09004 * 109.47314 * 179.97438 * 4 2 1 33 33 H 1.08999 * 113.75492 * 23.26164 * 6 5 2 34 34 H 1.08996 * 113.86217 * 251.91343 * 6 5 2 35 35 H 1.09001 * 113.73200 * 221.92680 * 7 6 5 36 36 H 1.08997 * 113.83085 * 90.65127 * 7 6 5 37 37 H 1.09005 * 109.46821 * 301.06056 * 10 8 5 38 38 H 1.09004 * 109.47529 * 181.06947 * 10 8 5 39 39 H 1.08993 * 109.47124 * 59.99950 * 14 12 11 40 40 H 1.09000 * 109.46591 * 299.99689 * 14 12 11 41 41 H 0.96997 * 120.00320 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0197 -0.6924 1.1994 6 6 1.2126 -0.3326 2.3861 7 6 1.2709 -1.8269 2.7511 8 6 1.5145 -2.0821 1.2527 9 1 0.6008 -2.2414 0.6801 10 6 2.5855 -3.1385 0.9736 11 8 3.6323 -3.0428 1.9752 12 6 4.6551 -3.9060 1.8722 13 8 4.6747 -4.7152 0.9750 14 6 5.7783 -3.8669 2.8761 15 16 6.9954 -5.1435 2.4700 16 6 8.1600 -4.8793 3.7655 17 1 7.9895 -4.1007 4.4943 18 6 9.2990 -5.6683 3.8464 19 7 9.5066 -6.6175 2.9584 20 14 10.5375 -5.3830 5.2153 21 1 10.1779 -6.2173 6.3900 22 1 11.8946 -5.7551 4.7407 23 1 10.5248 -3.9497 5.6037 24 1 -0.3634 0.6505 0.7955 25 1 -0.3633 0.3637 -0.9611 26 1 -0.3634 -1.0142 0.1656 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6767 -1.7488 -1.2492 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7208 -1.2495 33 1 0.2105 0.0218 2.1447 34 1 1.7328 0.3129 3.0938 35 1 0.3247 -2.2266 3.1160 36 1 2.1170 -2.0928 3.3847 37 1 3.0123 -2.9707 -0.0153 38 1 2.1359 -4.1307 1.0116 39 1 5.3799 -4.0486 3.8742 40 1 6.2564 -2.8877 2.8483 41 1 10.3028 -7.1686 3.0147 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845740348.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:12 Heat of formation + Delta-G solvation = -50.231922 kcal Electronic energy + Delta-G solvation = -20893.921693 eV Core-core repulsion = 17708.654421 eV Total energy + Delta-G solvation = -3185.267272 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.09309 -39.66406 -36.10939 -34.96855 -32.45261 -30.46471 -29.00880 -27.81087 -27.50979 -26.95241 -25.51928 -23.47938 -21.20035 -20.30199 -18.72790 -17.88380 -16.98400 -16.54904 -16.26974 -16.03273 -15.07252 -14.81749 -14.61564 -14.37288 -14.18085 -13.99604 -13.31998 -13.12078 -12.74350 -12.64590 -12.43339 -12.36326 -12.17308 -11.92356 -11.78511 -11.44853 -11.21766 -11.09945 -11.06288 -11.03492 -10.80306 -10.77723 -10.57083 -10.18842 -9.90191 -9.86480 -9.08327 -8.84930 -8.30848 -6.55816 -6.24039 -3.96039 2.74074 2.78311 3.22758 3.26761 3.31248 3.55781 3.62019 4.18186 4.35058 4.44395 4.50180 4.66926 4.76118 4.89928 4.95758 5.10316 5.11708 5.21431 5.26349 5.31964 5.39144 5.43402 5.46630 5.51233 5.56546 5.62898 5.69404 5.71204 5.77042 5.85765 5.87222 5.94739 6.02355 6.15450 6.18326 6.28733 6.82732 6.97037 7.58692 8.30043 8.33832 9.21462 10.83503 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.031244 B = 0.003097 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.944310 B = 9039.188878 C = 9195.651707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.063 3.937 3 C -0.132 4.132 4 C -0.142 4.142 5 N -0.453 5.453 6 C -0.008 4.008 7 C -0.137 4.137 8 C 0.023 3.977 9 H 0.101 0.899 10 C 0.086 3.914 11 O -0.345 6.345 12 C 0.478 3.522 13 O -0.494 6.494 14 C -0.127 4.127 15 S -0.060 6.060 16 C -0.535 4.535 17 H 0.076 0.924 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.921 3.079 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.271 1.271 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.810 13.965 -3.772 24.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.027 4.027 3 C -0.189 4.189 4 C -0.200 4.200 5 N -0.177 5.177 6 C -0.137 4.137 7 C -0.175 4.175 8 C -0.086 4.086 9 H 0.118 0.882 10 C 0.011 3.989 11 O -0.263 6.263 12 C 0.320 3.680 13 O -0.380 6.380 14 C -0.275 4.275 15 S 0.166 5.834 16 C -0.683 4.683 17 H 0.094 0.906 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.747 3.253 21 H -0.202 1.202 22 H -0.207 1.207 23 H -0.196 1.196 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.123 0.877 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.992 12.978 -5.012 23.543 hybrid contribution -0.180 0.938 1.531 1.805 sum -19.173 13.916 -3.481 23.945 Atomic orbital electron populations 1.22582 0.96853 1.02118 1.02548 1.21564 0.92717 0.95822 0.92555 1.21722 1.02105 0.93831 1.01257 1.21899 1.02334 0.99912 0.95826 1.68860 1.45579 1.01562 1.01661 1.24031 0.97799 0.97750 0.94097 1.23336 1.02941 0.95368 0.95814 1.23679 0.95944 0.90850 0.98153 0.88209 1.22652 0.86929 0.97941 0.91346 1.86519 1.31347 1.56416 1.51992 1.23277 0.81943 0.77677 0.85136 1.90657 1.77004 1.36627 1.33696 1.23263 0.96812 1.07755 0.99643 1.85393 1.18189 1.39621 1.40192 1.22851 1.08339 1.22550 1.14556 0.90619 1.24999 0.97361 0.94407 0.96771 1.70013 1.27367 1.18886 1.34047 0.86128 0.79567 0.78756 0.80832 1.20218 1.20741 1.19574 0.91757 0.91873 0.92137 0.91680 0.92506 0.92804 0.92653 0.92192 0.91535 0.90387 0.89432 0.91278 0.87660 0.91011 0.90982 0.88106 0.88001 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.28 7.29 37.16 0.27 -1.01 16 2 C 0.06 0.56 0.72 -131.61 -0.09 0.47 16 3 C -0.13 -1.12 8.62 37.16 0.32 -0.80 16 4 C -0.14 -1.31 7.92 37.16 0.29 -1.01 16 5 N -0.45 -4.83 5.77 -215.10 -1.24 -6.07 16 6 C -0.01 -0.08 7.29 -2.77 -0.02 -0.10 16 7 C -0.14 -1.32 7.69 -25.80 -0.20 -1.52 16 8 C 0.02 0.23 2.50 -66.66 -0.17 0.07 16 9 H 0.10 0.83 5.55 -51.93 -0.29 0.55 16 10 C 0.09 1.14 5.65 37.16 0.21 1.35 16 11 O -0.35 -5.62 8.72 -39.25 -0.34 -5.96 16 12 C 0.48 9.43 7.98 36.01 0.29 9.72 16 13 O -0.49 -11.10 15.61 -18.75 -0.29 -11.40 16 14 C -0.13 -2.65 6.27 36.01 0.23 -2.43 16 15 S -0.06 -1.64 20.58 -107.50 -2.21 -3.85 16 16 C -0.53 -15.21 9.50 30.94 0.29 -14.92 16 17 H 0.08 2.04 7.80 -52.48 -0.41 1.63 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.04 13.22 55.49 0.73 -25.30 16 20 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 24 H 0.06 0.42 6.26 -51.93 -0.33 0.09 16 25 H 0.06 0.40 8.12 -51.93 -0.42 -0.02 16 26 H 0.06 0.41 5.74 -51.93 -0.30 0.11 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.44 7.86 -51.93 -0.41 0.03 16 30 H 0.05 0.50 6.47 -51.93 -0.34 0.17 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.56 5.07 -51.93 -0.26 0.30 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.10 1.22 6.92 -51.93 -0.36 0.86 16 37 H 0.07 1.00 7.11 -51.93 -0.37 0.63 16 38 H 0.07 0.92 8.13 -51.93 -0.42 0.49 16 39 H 0.10 1.95 8.14 -51.92 -0.42 1.53 16 40 H 0.10 2.02 8.14 -51.92 -0.42 1.59 16 41 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 340.17 15.07 5.13 5.13 Total: -1.00 -32.41 340.17 -8.34 -40.75 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -6.42 Total: -1.48 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: 1.33 Total: -8.16 kcal Atomic # 7 Polarization: -30.86 SS G_CDS: -0.51 Total: -31.37 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.64 Total: -17.36 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.41 -8.34 -40.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845740348.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.477 kcal (2) G-P(sol) polarization free energy of solvation -32.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds