Wall clock time and date at job start Tue Mar 31 2020 06:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 13 13 S 1.81409 * 109.46814 * 60.00042 * 12 2 1 14 14 O 1.42096 * 110.54119 * 291.62426 * 13 12 2 15 15 O 1.42093 * 110.54080 * 68.37991 * 13 12 2 16 16 N 1.65601 * 104.44942 * 180.02562 * 13 12 2 17 17 C 1.46501 * 120.00164 * 64.99540 * 16 13 12 18 18 H 1.09000 * 115.55462 * 0.58893 * 17 16 13 19 19 C 1.53127 * 117.51176 * 146.31744 * 17 16 13 20 20 C 1.52460 * 117.51592 * 214.84590 * 17 16 13 21 21 C 1.53256 * 128.58272 * 134.95365 * 20 17 16 22 22 C 1.53886 * 86.88454 * 194.89063 * 21 20 17 23 23 C 1.53249 * 128.58308 * 10.15871 * 20 17 16 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.47486 * 180.02562 * 12 2 1 32 32 H 1.09001 * 109.47362 * 300.00732 * 12 2 1 33 33 H 0.97004 * 120.00069 * 245.00516 * 16 13 12 34 34 H 1.08995 * 117.51486 * 214.90387 * 19 17 16 35 35 H 1.09004 * 117.51225 * 359.96681 * 19 17 16 36 36 H 1.09004 * 113.64709 * 309.39520 * 21 20 17 37 37 H 1.09004 * 113.64528 * 80.39101 * 21 20 17 38 38 H 1.09004 * 113.58788 * 270.39546 * 22 21 20 39 39 H 1.08996 * 113.58994 * 139.57289 * 22 21 20 40 40 H 1.08996 * 113.65039 * 279.60672 * 23 20 17 41 41 H 1.09001 * 113.64808 * 50.52755 * 23 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.1474 -2.2864 3.6037 10 1 3.1473 -0.1859 4.8160 11 1 1.1678 -1.5867 4.8165 12 6 2.0400 -0.7213 -1.2492 13 16 1.4353 0.1339 -2.7304 14 8 0.0280 -0.0183 -2.8544 15 8 2.0480 1.4100 -2.8544 16 7 2.0530 -0.7407 -3.9936 17 6 1.6233 -2.1252 -4.2054 18 1 0.8878 -2.5031 -3.4952 19 6 1.5333 -2.6248 -5.6501 20 6 2.6575 -3.1099 -4.7395 21 6 2.9541 -4.5362 -4.2638 22 6 4.2633 -4.4420 -5.0671 23 6 4.1692 -2.9152 -4.8993 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6768 1.9562 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 0.7082 1.1608 3.4844 31 1 3.1300 -0.7217 -1.2490 32 1 1.6766 -1.7489 -1.2493 33 1 2.6994 -0.3364 -4.5933 34 1 0.7392 -3.3318 -5.8899 35 1 1.7933 -1.9231 -6.4427 36 1 3.1062 -4.6154 -3.1874 37 1 2.2567 -5.2797 -4.6500 38 1 4.1657 -4.7741 -6.1007 39 1 5.1197 -4.8848 -4.5587 40 1 4.4461 -2.3591 -5.7949 41 1 4.6594 -2.5418 -4.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872650359.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:42 Heat of formation + Delta-G solvation = -30.500919 kcal Electronic energy + Delta-G solvation = -21917.239667 eV Core-core repulsion = 18732.827996 eV Total energy + Delta-G solvation = -3184.411671 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.67109 -36.53748 -36.27525 -35.34990 -35.07249 -31.67210 -31.17826 -26.62951 -25.81863 -25.71615 -25.23219 -23.18011 -22.09699 -19.65194 -18.81822 -18.53137 -17.33002 -16.43582 -15.94762 -15.38435 -15.28808 -15.01456 -14.78093 -14.66686 -13.25896 -13.10662 -13.03022 -12.62518 -12.51369 -12.45644 -12.08375 -11.89015 -11.69904 -11.51973 -11.43245 -11.19830 -11.09990 -11.06214 -10.90493 -10.70419 -10.42010 -10.35672 -10.28012 -10.08911 -9.97135 -9.65405 -9.51313 -8.82665 -8.61870 -8.40822 -6.03866 -4.15742 0.85412 3.12732 3.24462 3.33000 3.35436 3.63090 4.26263 4.35066 4.38398 4.52226 4.60634 4.66491 4.75970 4.86371 5.06541 5.21576 5.23283 5.55949 5.59131 5.63609 5.64702 5.70852 5.75221 5.75675 5.88035 6.16428 6.21366 6.24576 6.38435 6.70451 6.79661 6.90663 7.01680 7.11888 7.31595 7.50332 7.67707 7.97990 8.09541 8.32729 8.83031 9.49747 10.97503 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.018841 B = 0.005287 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.761277 B = 5294.553444 C = 6213.609932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.081 3.919 3 C -0.164 4.164 4 C -0.501 4.501 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.883 5.883 8 Si 0.895 3.105 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 C -0.579 4.579 13 S 2.594 3.406 14 O -0.962 6.962 15 O -0.965 6.965 16 N -1.098 6.098 17 C 0.106 3.894 18 H 0.136 0.864 19 C -0.155 4.155 20 C -0.174 4.174 21 C -0.100 4.100 22 C -0.136 4.136 23 C -0.099 4.099 24 H 0.028 0.972 25 H 0.095 0.905 26 H 0.036 0.964 27 H 0.095 0.905 28 H 0.036 0.964 29 H 0.027 0.973 30 H 0.262 0.738 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.411 0.589 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.343 -8.609 -14.147 17.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.079 3.921 3 C -0.221 4.221 4 C -0.540 4.540 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.723 3.277 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.712 4.712 13 S 2.692 3.308 14 O -0.952 6.952 15 O -0.955 6.955 16 N -0.850 5.850 17 C -0.003 4.003 18 H 0.154 0.846 19 C -0.195 4.195 20 C -0.176 4.176 21 C -0.137 4.137 22 C -0.174 4.174 23 C -0.137 4.137 24 H 0.047 0.953 25 H 0.113 0.887 26 H 0.055 0.945 27 H 0.114 0.886 28 H 0.055 0.945 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.244 0.756 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.563 -7.761 -13.998 16.397 hybrid contribution 1.006 -0.837 0.818 1.543 sum 4.569 -8.597 -13.180 16.386 Atomic orbital electron populations 1.22275 0.96879 1.00617 1.02363 1.17941 0.92846 0.92205 0.89117 1.22272 0.99718 0.97840 1.02314 1.20978 1.31607 1.12039 0.89368 0.92266 1.24940 0.94903 0.94981 0.98931 1.69812 1.36354 1.22637 1.23357 0.86488 0.78638 0.79615 0.82943 1.19862 1.20955 1.20952 1.30521 1.11336 1.12681 1.16704 1.05637 0.74939 0.74613 0.75565 1.93548 1.29815 1.86386 1.85451 1.93555 1.78170 1.37999 1.85773 1.55439 1.60084 1.22264 1.47192 1.21235 0.99673 0.81341 0.98028 0.84647 1.23292 0.99203 1.02792 0.94181 1.22883 0.92691 0.96880 1.05177 1.22479 0.97169 0.93612 1.00455 1.22727 0.97839 0.96396 1.00422 1.22401 0.92689 0.96550 1.02027 0.95323 0.88659 0.94486 0.88650 0.94477 0.95389 0.92805 0.86287 0.86483 0.75622 0.87832 0.88289 0.89310 0.91298 0.90289 0.91338 0.91587 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.01 7.78 37.16 0.29 -3.72 16 2 C 0.08 1.96 0.52 -155.66 -0.08 1.88 16 3 C -0.16 -4.04 7.77 37.15 0.29 -3.75 16 4 C -0.50 -13.06 8.01 -34.44 -0.28 -13.34 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.88 -24.07 9.35 55.43 0.52 -23.55 16 8 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 9 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 C -0.58 -11.17 5.01 37.16 0.19 -10.99 16 13 S 2.59 47.88 4.47 -107.50 -0.48 47.39 16 14 O -0.96 -20.22 15.42 -57.54 -0.89 -21.11 16 15 O -0.96 -20.27 15.70 -57.54 -0.90 -21.17 16 16 N -1.10 -15.14 5.91 -5.07 -0.03 -15.17 16 17 C 0.11 1.30 6.34 -68.14 -0.43 0.87 16 18 H 0.14 1.66 8.10 -51.93 -0.42 1.24 16 19 C -0.16 -1.55 10.46 -26.88 -0.28 -1.83 16 20 C -0.17 -1.77 3.02 -154.74 -0.47 -2.23 16 21 C -0.10 -0.90 8.10 -26.14 -0.21 -1.11 16 22 C -0.14 -1.12 8.08 -25.81 -0.21 -1.33 16 23 C -0.10 -0.93 8.08 -26.14 -0.21 -1.14 16 24 H 0.03 0.67 5.46 -51.93 -0.28 0.38 16 25 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 26 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 28 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 30 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 31 H 0.12 2.10 8.14 -51.92 -0.42 1.68 16 32 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 33 H 0.41 4.90 8.92 -34.47 -0.31 4.59 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 333.88 15.07 5.03 5.03 Total: -1.00 -31.22 333.88 -9.81 -41.03 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -6.54 Total: 7.10 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: -1.50 Total: -35.09 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.49 Total: -38.73 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -1.79 Total: -42.28 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 47.88 SS G_CDS: -0.48 Total: 47.39 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.22 -9.81 -41.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872650359.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.528 kcal (2) G-P(sol) polarization free energy of solvation -31.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds