Wall clock time and date at job start Tue Mar 31 2020 05:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47385 * 2 1 4 4 C 1.52997 * 109.46907 * 180.02562 * 3 2 1 5 5 N 1.46508 * 109.46968 * 179.97438 * 4 3 2 6 6 C 1.36936 * 119.99965 * 86.79443 * 5 4 3 7 7 H 1.08008 * 119.99725 * 35.37475 * 6 5 4 8 8 C 1.38807 * 120.00071 * 215.09552 * 6 5 4 9 9 N 1.31620 * 120.00050 * 21.87656 * 8 6 5 10 10 Si 1.86797 * 120.00088 * 201.86896 * 8 6 5 11 11 H 1.48504 * 109.46951 * 60.00340 * 10 8 6 12 12 H 1.48497 * 109.47367 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47450 * 300.00282 * 10 8 6 14 14 C 1.46495 * 120.00159 * 266.79728 * 5 4 3 15 15 C 1.50697 * 109.47177 * 270.00095 * 14 5 4 16 16 C 1.38457 * 120.01452 * 89.99616 * 15 14 5 17 17 F 1.35101 * 119.99138 * 0.02562 * 16 15 14 18 18 C 1.38421 * 120.02057 * 179.97438 * 16 15 14 19 19 C 1.38243 * 120.04797 * 0.02562 * 18 16 15 20 20 C 1.38366 * 120.02072 * 359.97438 * 19 18 16 21 21 F 1.35098 * 120.01049 * 180.02562 * 20 19 18 22 22 C 1.38352 * 120.01329 * 269.72316 * 15 14 5 23 23 F 1.35105 * 120.01760 * 0.02562 * 22 15 14 24 24 H 1.09003 * 109.46993 * 300.00040 * 1 2 3 25 25 H 1.09004 * 109.46559 * 60.00024 * 1 2 3 26 26 H 1.08994 * 109.47298 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46949 * 239.99414 * 2 1 3 28 28 H 1.09006 * 109.47005 * 120.00239 * 2 1 3 29 29 H 1.09003 * 109.47087 * 60.00018 * 3 2 1 30 30 H 1.08998 * 109.46962 * 300.00203 * 3 2 1 31 31 H 1.08996 * 109.47653 * 60.00119 * 4 3 2 32 32 H 1.08998 * 109.47435 * 299.99865 * 4 3 2 33 33 H 0.96996 * 119.99949 * 179.97438 * 9 8 6 34 34 H 1.09003 * 109.46948 * 29.99735 * 14 5 4 35 35 H 1.08998 * 109.47474 * 149.99986 * 14 5 4 36 36 H 1.08005 * 119.98093 * 180.02562 * 18 16 15 37 37 H 1.07996 * 119.99425 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 7 4.0585 2.8236 -0.0013 6 6 4.2247 3.4915 1.1825 7 1 4.5599 2.9592 2.0605 8 6 3.9681 4.8539 1.2527 9 7 3.1812 5.4220 0.3636 10 14 4.7393 5.8809 2.6091 11 1 6.2189 5.7992 2.5114 12 1 4.3106 7.2952 2.4637 13 1 4.3013 5.3648 3.9308 14 6 4.3690 3.4902 -1.2683 15 6 5.8129 3.2458 -1.6238 16 6 6.1617 2.1433 -2.3852 17 9 5.2072 1.2866 -2.8100 18 6 7.4879 1.9190 -2.7123 19 6 8.4654 2.7951 -2.2788 20 6 8.1190 3.8975 -1.5177 21 9 9.0744 4.7537 -1.0946 22 6 6.7899 4.1262 -1.1942 23 9 6.4500 5.2050 -0.4554 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9331 0.9286 -0.8908 32 1 3.9338 0.9284 0.8891 33 1 3.0016 6.3739 0.4129 34 1 3.7286 3.0914 -2.0551 35 1 4.1960 4.5616 -1.1671 36 1 7.7592 1.0590 -3.3067 37 1 9.4998 2.6195 -2.5348 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137932425.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:33 Heat of formation + Delta-G solvation = -103.408617 kcal Electronic energy + Delta-G solvation = -23642.903213 eV Core-core repulsion = 19778.029335 eV Total energy + Delta-G solvation = -3864.873878 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.94456 -48.58119 -47.92402 -38.33987 -36.28276 -34.09097 -31.70792 -30.82744 -29.51076 -27.86710 -25.93902 -23.94380 -22.49267 -22.03812 -20.78241 -19.94658 -17.80514 -17.39009 -17.07582 -16.53190 -15.92187 -15.31771 -15.12593 -14.82882 -14.75514 -14.33996 -14.16427 -13.94312 -13.76187 -13.50644 -13.43901 -13.04319 -12.65290 -12.14695 -11.98283 -11.70889 -11.46147 -11.37592 -11.09120 -10.83278 -10.67246 -10.58160 -10.42381 -10.30379 -10.08885 -9.95519 -9.66698 -8.57396 -8.42926 -8.21125 -6.73840 -5.89202 -3.41087 1.17547 1.28765 3.36312 3.42911 3.48370 3.57546 4.16093 4.44461 4.46264 4.81281 4.92411 5.10472 5.26234 5.29636 5.47281 5.48245 5.67595 5.71396 5.96302 6.06495 6.08722 6.11167 6.22528 6.29866 6.37227 6.41727 6.42810 6.47550 6.64260 6.69007 6.78274 7.07614 7.14338 7.27190 7.48243 7.75624 8.40466 9.06407 9.70517 10.25779 11.12130 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.012531 B = 0.008177 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.906563 B = 3423.247263 C = 5280.181265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.131 4.131 4 C 0.144 3.856 5 N -0.569 5.569 6 C -0.262 4.262 7 H 0.062 0.938 8 C 0.025 3.975 9 N -0.877 5.877 10 Si 0.891 3.109 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.282 1.282 14 C 0.170 3.830 15 C -0.121 4.121 16 C 0.111 3.889 17 F -0.131 7.131 18 C -0.145 4.145 19 C -0.123 4.123 20 C 0.045 3.955 21 F -0.135 7.135 22 C 0.114 3.886 23 F -0.106 7.106 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.258 0.742 34 H 0.047 0.953 35 H 0.119 0.881 36 H 0.141 0.859 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.873 -7.095 -6.287 10.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.171 4.171 4 C 0.019 3.981 5 N -0.287 5.287 6 C -0.391 4.391 7 H 0.080 0.920 8 C -0.176 4.176 9 N -0.518 5.518 10 Si 0.720 3.280 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.208 1.208 14 C 0.043 3.957 15 C -0.127 4.127 16 C 0.091 3.909 17 F -0.109 7.109 18 C -0.164 4.164 19 C -0.142 4.142 20 C 0.025 3.975 21 F -0.113 7.113 22 C 0.092 3.908 23 F -0.084 7.084 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.136 0.864 36 H 0.159 0.841 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.727 -6.870 -6.222 10.404 hybrid contribution 0.440 0.773 0.867 1.242 sum 5.167 -6.097 -5.354 9.619 Atomic orbital electron populations 1.21754 0.96752 1.00389 1.01681 1.21526 0.95127 0.98561 1.00899 1.22098 0.98673 0.94028 1.02252 1.21030 0.91833 0.86643 0.98615 1.43774 1.72249 1.10487 1.02148 1.19003 1.39663 0.91555 0.88921 0.92025 1.25023 0.96541 0.98371 0.97679 1.69901 1.33633 1.11358 1.36917 0.86548 0.80183 0.79462 0.81782 1.20353 1.21406 1.20810 1.20064 0.84035 1.03919 0.87677 1.21401 1.02295 0.92960 0.96071 1.17250 0.85459 0.89603 0.98632 1.91471 1.63309 1.68229 1.87910 1.20850 0.90725 1.01364 1.03505 1.20579 1.00579 0.93541 0.99527 1.17760 0.84495 0.92322 1.02936 1.91484 1.62398 1.68878 1.88567 1.17210 0.90475 0.87243 0.95845 1.91598 1.92594 1.50914 1.73293 0.92950 0.93082 0.93722 0.92893 0.92755 0.91776 0.92909 0.94092 0.94195 0.93191 0.93476 0.86421 0.84113 0.83802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 37.16 0.37 -1.68 16 2 C -0.12 -1.90 5.93 -26.73 -0.16 -2.06 16 3 C -0.13 -2.53 5.53 -26.73 -0.15 -2.68 16 4 C 0.14 3.00 5.67 -4.04 -0.02 2.98 16 5 N -0.57 -13.68 2.43 -174.61 -0.42 -14.11 16 6 C -0.26 -6.96 9.49 -15.06 -0.14 -7.10 16 7 H 0.06 1.66 7.92 -52.48 -0.42 1.25 16 8 C 0.03 0.68 4.29 -17.43 -0.07 0.61 16 9 N -0.88 -24.29 11.32 55.49 0.63 -23.66 16 10 Si 0.89 21.81 29.61 -169.99 -5.03 16.78 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 C 0.17 3.90 5.05 -5.20 -0.03 3.87 16 15 C -0.12 -2.46 5.47 -104.50 -0.57 -3.03 16 16 C 0.11 1.91 7.24 -39.43 -0.29 1.63 16 17 F -0.13 -2.24 15.09 2.25 0.03 -2.21 16 18 C -0.15 -2.01 10.02 -39.51 -0.40 -2.41 16 19 C -0.12 -1.70 10.02 -39.53 -0.40 -2.10 16 20 C 0.05 0.79 7.31 -39.37 -0.29 0.50 16 21 F -0.13 -2.39 17.18 2.25 0.04 -2.35 16 22 C 0.11 2.35 7.25 -39.37 -0.29 2.06 16 23 F -0.11 -2.50 15.71 2.25 0.04 -2.46 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.04 0.80 6.62 -51.93 -0.34 0.45 16 32 H 0.04 0.83 8.07 -51.93 -0.42 0.41 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.05 1.04 7.57 -51.93 -0.39 0.64 16 35 H 0.12 3.06 4.84 -51.93 -0.25 2.80 16 36 H 0.14 1.48 8.06 -52.48 -0.42 1.05 16 37 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 322.28 15.07 4.86 4.86 Total: -1.00 -27.67 322.28 -7.05 -34.73 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -4.76 Total: -2.17 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -2.43 Total: -9.41 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.20 Total: -37.77 kcal Atomic # 9 Polarization: -7.13 SS G_CDS: 0.11 Total: -7.02 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.67 -7.05 -34.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137932425.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.683 kcal (2) G-P(sol) polarization free energy of solvation -27.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds