Wall clock time and date at job start Tue Mar 31 2020 05:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47385 * 2 1 4 4 C 1.52997 * 109.46907 * 180.02562 * 3 2 1 5 5 N 1.46508 * 109.46968 * 179.97438 * 4 3 2 6 6 C 1.36936 * 119.99965 * 86.79443 * 5 4 3 7 7 H 1.08008 * 119.99725 * 35.37475 * 6 5 4 8 8 C 1.38807 * 120.00071 * 215.09552 * 6 5 4 9 9 N 1.31620 * 120.00050 * 21.87656 * 8 6 5 10 10 Si 1.86797 * 120.00088 * 201.86896 * 8 6 5 11 11 H 1.48504 * 109.46951 * 60.00340 * 10 8 6 12 12 H 1.48497 * 109.47367 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47450 * 300.00282 * 10 8 6 14 14 C 1.46495 * 120.00159 * 266.79728 * 5 4 3 15 15 C 1.50697 * 109.47177 * 270.00095 * 14 5 4 16 16 C 1.38457 * 120.01452 * 89.99616 * 15 14 5 17 17 F 1.35101 * 119.99138 * 0.02562 * 16 15 14 18 18 C 1.38421 * 120.02057 * 179.97438 * 16 15 14 19 19 C 1.38243 * 120.04797 * 0.02562 * 18 16 15 20 20 C 1.38366 * 120.02072 * 359.97438 * 19 18 16 21 21 F 1.35098 * 120.01049 * 180.02562 * 20 19 18 22 22 C 1.38352 * 120.01329 * 269.72316 * 15 14 5 23 23 F 1.35105 * 120.01760 * 0.02562 * 22 15 14 24 24 H 1.09003 * 109.46993 * 300.00040 * 1 2 3 25 25 H 1.09004 * 109.46559 * 60.00024 * 1 2 3 26 26 H 1.08994 * 109.47298 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46949 * 239.99414 * 2 1 3 28 28 H 1.09006 * 109.47005 * 120.00239 * 2 1 3 29 29 H 1.09003 * 109.47087 * 60.00018 * 3 2 1 30 30 H 1.08998 * 109.46962 * 300.00203 * 3 2 1 31 31 H 1.08996 * 109.47653 * 60.00119 * 4 3 2 32 32 H 1.08998 * 109.47435 * 299.99865 * 4 3 2 33 33 H 0.96996 * 119.99949 * 179.97438 * 9 8 6 34 34 H 1.09003 * 109.46948 * 29.99735 * 14 5 4 35 35 H 1.08998 * 109.47474 * 149.99986 * 14 5 4 36 36 H 1.08005 * 119.98093 * 180.02562 * 18 16 15 37 37 H 1.07996 * 119.99425 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 7 4.0585 2.8236 -0.0013 6 6 4.2247 3.4915 1.1825 7 1 4.5599 2.9592 2.0605 8 6 3.9681 4.8539 1.2527 9 7 3.1812 5.4220 0.3636 10 14 4.7393 5.8809 2.6091 11 1 6.2189 5.7992 2.5114 12 1 4.3106 7.2952 2.4637 13 1 4.3013 5.3648 3.9308 14 6 4.3690 3.4902 -1.2683 15 6 5.8129 3.2458 -1.6238 16 6 6.1617 2.1433 -2.3852 17 9 5.2072 1.2866 -2.8100 18 6 7.4879 1.9190 -2.7123 19 6 8.4654 2.7951 -2.2788 20 6 8.1190 3.8975 -1.5177 21 9 9.0744 4.7537 -1.0946 22 6 6.7899 4.1262 -1.1942 23 9 6.4500 5.2050 -0.4554 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9331 0.9286 -0.8908 32 1 3.9338 0.9284 0.8891 33 1 3.0016 6.3739 0.4129 34 1 3.7286 3.0914 -2.0551 35 1 4.1960 4.5616 -1.1671 36 1 7.7592 1.0590 -3.3067 37 1 9.4998 2.6195 -2.5348 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137932425.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:33 Heat of formation + Delta-G solvation = -116.331010 kcal Electronic energy + Delta-G solvation = -23643.463570 eV Core-core repulsion = 19778.029335 eV Total energy + Delta-G solvation = -3865.434235 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.41148 -49.93547 -49.48208 -39.74890 -37.95924 -35.59564 -33.52012 -32.35918 -30.86519 -29.41082 -27.68469 -25.60879 -23.88384 -23.47109 -22.28235 -21.57864 -19.29996 -18.85339 -18.69546 -18.09194 -17.41033 -16.78873 -16.77340 -16.53523 -16.19126 -15.91311 -15.58470 -15.42964 -15.39298 -15.19478 -14.98405 -14.37390 -13.93515 -13.70019 -13.40160 -13.24339 -13.15383 -12.95723 -12.68823 -12.59316 -12.38050 -12.15942 -11.98408 -11.88226 -11.82084 -11.59975 -11.26941 -10.57624 -9.88405 -9.56742 -8.67685 -7.90515 -5.46376 -0.18401 -0.03850 1.37376 1.43077 1.47343 2.22613 2.47325 2.79980 3.11102 3.23167 3.48889 3.60470 3.68943 3.85740 4.06518 4.17420 4.29357 4.43660 4.50629 4.57401 4.81564 4.87527 4.88916 4.94442 4.98738 5.03760 5.06407 5.07613 5.11988 5.18985 5.39162 5.52233 5.55338 5.60314 5.73481 5.79432 6.40507 7.09400 7.78137 8.29487 9.07683 Molecular weight = 287.12amu Principal moments of inertia in cm(-1) A = 0.012531 B = 0.008177 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.906563 B = 3423.247263 C = 5280.181265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C -0.120 4.120 4 C 0.144 3.856 5 N -0.585 5.585 6 C -0.266 4.266 7 H 0.052 0.948 8 C -0.009 4.009 9 N -0.904 5.904 10 Si 0.931 3.069 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.274 1.274 14 C 0.177 3.823 15 C -0.143 4.143 16 C 0.108 3.892 17 F -0.131 7.131 18 C -0.117 4.117 19 C -0.091 4.091 20 C 0.038 3.962 21 F -0.138 7.138 22 C 0.077 3.923 23 F -0.136 7.136 24 H 0.044 0.956 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.031 0.969 30 H 0.035 0.965 31 H 0.056 0.944 32 H 0.039 0.961 33 H 0.252 0.748 34 H 0.045 0.955 35 H 0.084 0.916 36 H 0.192 0.808 37 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.869 -9.801 -7.744 14.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C -0.160 4.160 4 C 0.019 3.981 5 N -0.304 5.304 6 C -0.396 4.396 7 H 0.070 0.930 8 C -0.207 4.207 9 N -0.547 5.547 10 Si 0.760 3.240 11 H -0.211 1.211 12 H -0.216 1.216 13 H -0.200 1.200 14 C 0.050 3.950 15 C -0.148 4.148 16 C 0.088 3.912 17 F -0.109 7.109 18 C -0.135 4.135 19 C -0.109 4.109 20 C 0.018 3.982 21 F -0.117 7.117 22 C 0.056 3.944 23 F -0.114 7.114 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.209 0.791 37 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 6.742 -9.597 -7.690 14.024 hybrid contribution -0.065 1.522 1.182 1.928 sum 6.676 -8.075 -6.508 12.335 Atomic orbital electron populations 1.21734 0.95414 1.01981 1.01246 1.21460 0.96291 0.95513 1.02042 1.21943 0.97826 0.96475 0.99752 1.21117 0.92518 0.85266 0.99159 1.43920 1.73509 1.11279 1.01673 1.19053 1.38948 0.91826 0.89733 0.93041 1.25426 0.97119 0.99079 0.99112 1.70003 1.35331 1.10913 1.38441 0.85910 0.78997 0.78437 0.80659 1.21139 1.21630 1.19959 1.19708 0.86284 1.01754 0.87212 1.21088 1.00368 0.94834 0.98538 1.17434 0.87014 0.88552 0.98196 1.91473 1.63738 1.67931 1.87778 1.21371 0.88480 1.02010 1.01670 1.21173 1.02995 0.90741 0.96030 1.18008 0.83123 0.93473 1.03611 1.91477 1.62108 1.69330 1.88776 1.17660 0.92301 0.87317 0.97149 1.91511 1.93054 1.52448 1.74437 0.93722 0.93292 0.91055 0.91342 0.91896 0.94968 0.94652 0.92580 0.94275 0.93858 0.93641 0.89812 0.79078 0.78804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 9.91 71.98 0.71 -3.11 16 2 C -0.11 -3.39 5.93 30.59 0.18 -3.21 16 3 C -0.12 -4.73 5.53 30.59 0.17 -4.57 16 4 C 0.14 6.03 5.67 86.38 0.49 6.52 16 5 N -0.58 -29.01 2.43 -706.35 -1.72 -30.72 16 6 C -0.27 -14.64 9.49 84.03 0.80 -13.84 16 7 H 0.05 2.88 7.92 -2.91 -0.02 2.86 16 8 C -0.01 -0.48 4.29 84.86 0.36 -0.12 16 9 N -0.90 -52.70 11.32 21.65 0.25 -52.46 16 10 Si 0.93 46.38 29.61 68.60 2.03 48.41 16 11 H -0.28 -14.37 7.11 99.48 0.71 -13.67 16 12 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 13 H -0.27 -13.11 7.11 99.48 0.71 -12.41 16 14 C 0.18 8.43 5.05 85.63 0.43 8.86 16 15 C -0.14 -5.80 5.47 -19.79 -0.11 -5.90 16 16 C 0.11 3.44 7.24 22.37 0.16 3.60 16 17 F -0.13 -4.14 15.09 44.97 0.68 -3.46 16 18 C -0.12 -2.58 10.02 22.31 0.22 -2.36 16 19 C -0.09 -2.03 10.02 22.30 0.22 -1.81 16 20 C 0.04 1.25 7.31 22.41 0.16 1.41 16 21 F -0.14 -4.68 17.18 44.97 0.77 -3.90 16 22 C 0.08 3.19 7.25 22.40 0.16 3.35 16 23 F -0.14 -6.73 15.71 44.97 0.71 -6.02 16 24 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 2.14 6.62 -2.39 -0.02 2.13 16 32 H 0.04 1.62 8.07 -2.39 -0.02 1.60 16 33 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 34 H 0.05 2.08 7.57 -2.39 -0.02 2.06 16 35 H 0.08 4.62 4.84 -2.39 -0.01 4.61 16 36 H 0.19 2.47 8.06 -2.91 -0.02 2.45 16 37 H 0.19 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -64.63 322.28 7.77 -56.86 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: 1.08 Total: 2.45 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 3.97 Total: -11.16 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -1.47 Total: -83.18 kcal Atomic # 9 Polarization: -15.54 SS G_CDS: 2.16 Total: -13.38 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -64.63 7.77 -56.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137932425.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.471 kcal (2) G-P(sol) polarization free energy of solvation -64.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds