Wall clock time and date at job start Tue Mar 31 2020 06:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47079 * 2 1 4 4 N 1.46893 * 109.47406 * 239.99206 * 2 1 3 5 5 C 1.46899 * 110.99815 * 85.00004 * 4 2 1 6 6 C 1.50702 * 109.47192 * 180.02562 * 5 4 2 7 7 C 1.34517 * 125.79001 * 89.99939 * 6 5 4 8 8 C 1.41384 * 106.84049 * 180.02562 * 7 6 5 9 9 C 1.34509 * 106.84058 * 0.02562 * 8 7 6 10 10 O 1.34302 * 108.42467 * 0.02562 * 9 8 7 11 11 C 1.50700 * 109.46654 * 119.99188 * 2 1 3 12 12 C 1.38305 * 119.93107 * 79.73090 * 11 2 1 13 13 C 1.38095 * 120.07228 * 179.72598 * 12 11 2 14 14 C 1.38880 * 119.92607 * 0.53939 * 13 12 11 15 15 O 1.35760 * 120.06944 * 179.75083 * 14 13 12 16 16 C 1.34825 * 117.00019 * 174.44675 * 15 14 13 17 17 H 1.07994 * 120.00134 * 5.05470 * 16 15 14 18 18 C 1.38658 * 119.99668 * 185.05793 * 16 15 14 19 19 N 1.31554 * 119.99539 * 180.02562 * 18 16 15 20 20 Si 1.86791 * 120.00119 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47208 * 90.00359 * 20 18 16 22 22 H 1.48499 * 109.47489 * 210.00206 * 20 18 16 23 23 H 1.48503 * 109.47311 * 330.00091 * 20 18 16 24 24 C 1.38876 * 119.86753 * 359.73354 * 14 13 12 25 25 C 1.38103 * 119.92700 * 359.97438 * 24 14 13 26 26 H 1.09002 * 109.46651 * 60.00600 * 1 2 3 27 27 H 1.08996 * 109.47079 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47114 * 300.01052 * 1 2 3 29 29 H 1.00902 * 111.00307 * 321.05054 * 4 2 1 30 30 H 1.09007 * 109.47163 * 60.00527 * 5 4 2 31 31 H 1.08999 * 109.47336 * 299.99801 * 5 4 2 32 32 H 1.08003 * 126.57716 * 0.06026 * 7 6 5 33 33 H 1.08004 * 126.57455 * 180.02562 * 8 7 6 34 34 H 1.08007 * 125.78501 * 180.26201 * 9 8 7 35 35 H 1.08008 * 119.96139 * 359.97438 * 12 11 2 36 36 H 1.07994 * 120.04147 * 180.27311 * 13 12 11 37 37 H 0.97007 * 119.99695 * 179.97438 * 19 18 16 38 38 H 1.08001 * 120.04115 * 179.97438 * 24 14 13 39 39 H 1.07997 * 119.96430 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0198 -0.6926 -1.1993 5 6 2.0826 0.2223 -2.3468 6 6 2.5875 -0.5222 -3.5559 7 6 1.8261 -1.1741 -4.4530 8 6 2.7055 -1.7244 -5.4136 9 6 3.9516 -1.3765 -5.0457 10 8 3.8742 -0.6491 -3.9194 11 6 2.0323 -0.7103 1.2306 12 6 2.0608 -2.0925 1.2662 13 6 2.5257 -2.7463 2.3902 14 6 2.9545 -2.0144 3.4899 15 8 3.4073 -2.6542 4.5983 16 6 3.9150 -1.8866 5.5836 17 1 3.8735 -0.8103 5.5055 18 6 4.4906 -2.4792 6.6973 19 7 4.9855 -1.7303 7.6589 20 14 4.5618 -4.3409 6.8327 21 1 5.8248 -4.8333 6.2262 22 1 4.5131 -4.7354 8.2635 23 1 3.4043 -4.9340 6.1160 24 6 2.9193 -0.6265 3.4532 25 6 2.4589 0.0214 2.3239 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8898 29 1 1.4497 -1.4981 -1.4099 30 1 2.7590 1.0460 -2.1182 31 1 1.0872 0.6160 -2.5526 32 1 0.7495 -1.2600 -4.4419 33 1 2.4295 -2.3116 -6.2770 34 1 4.8601 -1.6347 -5.5697 35 1 1.7228 -2.6612 0.4125 36 1 2.5519 -3.8256 2.4159 37 1 5.3878 -2.1448 8.4382 38 1 3.2517 -0.0546 4.3069 39 1 2.4317 1.1007 2.2946 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037184209.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:08 Heat of formation + Delta-G solvation = 16.743943 kcal Electronic energy + Delta-G solvation = -21347.388311 eV Core-core repulsion = 18029.581379 eV Total energy + Delta-G solvation = -3317.806932 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.67644 -39.31656 -37.78103 -35.83930 -33.19530 -32.44335 -31.92233 -30.25149 -29.04452 -28.03689 -25.39433 -25.03634 -22.54140 -21.98038 -21.86616 -20.63175 -20.00787 -17.80754 -17.71110 -17.20117 -16.27767 -15.85957 -15.13298 -14.92457 -14.54933 -14.09866 -13.93816 -13.74282 -13.69234 -13.20507 -13.05964 -12.98788 -12.83129 -12.66814 -12.44652 -12.25617 -12.16011 -11.75607 -11.43741 -11.13973 -10.70488 -10.63952 -10.57667 -10.11833 -10.08966 -9.35168 -8.84943 -8.75176 -8.45004 -8.19623 -7.25431 -6.38922 -4.05271 1.55188 2.18516 2.25701 2.43443 2.85441 3.23999 3.27980 3.42517 4.14642 4.26304 4.50259 4.58864 4.82365 4.84966 4.89440 4.99172 5.08478 5.14392 5.17134 5.32135 5.33827 5.61732 5.62297 5.69788 5.70841 5.78756 5.89252 5.93059 6.08718 6.18103 6.31155 6.37428 6.60363 6.75376 6.88715 6.99052 7.12654 7.26770 7.31957 7.36849 7.65454 7.83509 8.07281 8.96761 9.60151 10.68927 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.025445 B = 0.003008 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.154890 B = 9307.171938 C = 9802.276021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.140 3.860 3 H 0.080 0.920 4 N -0.676 5.676 5 C 0.135 3.865 6 C 0.001 3.999 7 C -0.212 4.212 8 C -0.217 4.217 9 C -0.040 4.040 10 O -0.167 6.167 11 C -0.160 4.160 12 C -0.055 4.055 13 C -0.193 4.193 14 C 0.159 3.841 15 O -0.219 6.219 16 C -0.389 4.389 17 H 0.106 0.894 18 C 0.062 3.938 19 N -0.881 5.881 20 Si 0.905 3.095 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.260 1.260 24 C -0.220 4.220 25 C -0.068 4.068 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.343 0.657 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.201 0.799 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.279 0.721 38 H 0.132 0.868 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.420 2.737 -22.410 23.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.031 3.969 3 H 0.098 0.902 4 N -0.307 5.307 5 C 0.006 3.994 6 C -0.050 4.050 7 C -0.232 4.232 8 C -0.236 4.236 9 C -0.109 4.109 10 O -0.062 6.062 11 C -0.161 4.161 12 C -0.074 4.074 13 C -0.213 4.213 14 C 0.107 3.893 15 O -0.125 6.125 16 C -0.464 4.464 17 H 0.123 0.877 18 C -0.140 4.140 19 N -0.520 5.520 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.184 1.184 24 C -0.239 4.239 25 C -0.087 4.087 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.162 0.838 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.163 0.837 33 H 0.164 0.836 34 H 0.218 0.782 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.089 0.911 38 H 0.150 0.850 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.391 2.722 -21.788 22.869 hybrid contribution -0.866 -0.738 -0.196 1.154 sum -7.257 1.984 -21.984 23.236 Atomic orbital electron populations 1.22513 0.96925 1.02352 1.01835 1.20235 0.92022 0.96930 0.87686 0.90173 1.60604 1.58447 1.09222 1.02451 1.20352 0.99313 0.94227 0.85462 1.22345 0.81042 1.03133 0.98446 1.21596 1.00636 1.03864 0.97144 1.21800 0.92822 1.06318 1.02692 1.24052 1.00059 0.98365 0.88388 1.84068 1.28449 1.57125 1.36527 1.19089 1.08527 0.93546 0.94922 1.20312 0.97726 0.93441 0.95888 1.20198 1.08848 0.99246 0.92987 1.19129 0.92518 0.90958 0.86676 1.83573 1.69283 1.36399 1.23203 1.20764 1.37222 0.92095 0.96338 0.87664 1.24462 0.95090 1.00192 0.94297 1.69650 1.37617 1.36118 1.08573 0.86181 0.79714 0.83752 0.77246 1.19896 1.20844 1.18382 1.21224 1.08224 0.94331 1.00141 1.20590 0.97108 0.98362 0.92653 0.93241 0.92232 0.91524 0.83778 0.89181 0.92086 0.83740 0.83622 0.78242 0.87235 0.86718 0.91107 0.85030 0.87444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 9.14 37.16 0.34 -1.47 16 2 C 0.14 1.70 2.79 -68.87 -0.19 1.51 16 3 H 0.08 0.93 7.66 -51.93 -0.40 0.53 16 4 N -0.68 -7.84 5.70 -109.22 -0.62 -8.46 16 5 C 0.14 1.33 6.01 -4.98 -0.03 1.30 16 6 C 0.00 0.01 6.83 -35.62 -0.24 -0.23 16 7 C -0.21 -2.09 10.81 -39.70 -0.43 -2.52 16 8 C -0.22 -2.00 10.91 -39.70 -0.43 -2.43 16 9 C -0.04 -0.38 12.09 29.41 0.36 -0.02 16 10 O -0.17 -2.02 10.65 5.70 0.06 -1.96 16 11 C -0.16 -2.57 4.96 -104.57 -0.52 -3.09 16 12 C -0.06 -0.94 9.31 -39.61 -0.37 -1.31 16 13 C -0.19 -3.89 9.99 -39.40 -0.39 -4.28 16 14 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 15 O -0.22 -5.87 8.59 0.03 0.00 -5.87 16 16 C -0.39 -11.06 9.95 30.89 0.31 -10.76 16 17 H 0.11 3.05 5.44 -52.49 -0.29 2.77 16 18 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 19 N -0.88 -25.69 13.96 55.48 0.77 -24.92 16 20 Si 0.91 21.93 28.62 -169.99 -4.86 17.06 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.26 -6.31 7.11 56.52 0.40 -5.90 16 24 C -0.22 -4.76 9.17 -39.39 -0.36 -5.12 16 25 C -0.07 -1.22 9.66 -39.61 -0.38 -1.60 16 26 H 0.05 0.41 7.45 -51.93 -0.39 0.02 16 27 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.34 3.70 7.81 -39.29 -0.31 3.39 16 30 H 0.09 0.89 8.06 -51.93 -0.42 0.47 16 31 H 0.06 0.48 7.44 -51.93 -0.39 0.09 16 32 H 0.14 1.15 8.06 -52.48 -0.42 0.72 16 33 H 0.15 1.01 8.06 -52.48 -0.42 0.58 16 34 H 0.20 1.13 8.06 -52.48 -0.42 0.71 16 35 H 0.11 1.58 7.25 -52.48 -0.38 1.20 16 36 H 0.11 2.17 8.06 -52.49 -0.42 1.75 16 37 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.13 3.00 5.64 -52.49 -0.30 2.70 16 39 H 0.11 1.64 8.03 -52.49 -0.42 1.21 16 LS Contribution 334.17 15.07 5.04 5.04 Total: -1.00 -31.12 334.17 -7.27 -38.40 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -4.95 Total: 5.60 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: -2.71 Total: -24.89 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 0.15 Total: -33.38 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: 0.06 Total: -7.83 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.86 Total: 17.06 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.12 -7.27 -38.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037184209.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.139 kcal (2) G-P(sol) polarization free energy of solvation -31.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds