Wall clock time and date at job start Tue Mar 31 2020 06:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47079 * 2 1 4 4 N 1.46893 * 109.47406 * 239.99206 * 2 1 3 5 5 C 1.46899 * 110.99815 * 85.00004 * 4 2 1 6 6 C 1.50702 * 109.47192 * 180.02562 * 5 4 2 7 7 C 1.34517 * 125.79001 * 89.99939 * 6 5 4 8 8 C 1.41384 * 106.84049 * 180.02562 * 7 6 5 9 9 C 1.34509 * 106.84058 * 0.02562 * 8 7 6 10 10 O 1.34302 * 108.42467 * 0.02562 * 9 8 7 11 11 C 1.50700 * 109.46654 * 119.99188 * 2 1 3 12 12 C 1.38305 * 119.93107 * 79.73090 * 11 2 1 13 13 C 1.38095 * 120.07228 * 179.72598 * 12 11 2 14 14 C 1.38880 * 119.92607 * 0.53939 * 13 12 11 15 15 O 1.35760 * 120.06944 * 179.75083 * 14 13 12 16 16 C 1.34825 * 117.00019 * 174.44675 * 15 14 13 17 17 H 1.07994 * 120.00134 * 5.05470 * 16 15 14 18 18 C 1.38658 * 119.99668 * 185.05793 * 16 15 14 19 19 N 1.31554 * 119.99539 * 180.02562 * 18 16 15 20 20 Si 1.86791 * 120.00119 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47208 * 90.00359 * 20 18 16 22 22 H 1.48499 * 109.47489 * 210.00206 * 20 18 16 23 23 H 1.48503 * 109.47311 * 330.00091 * 20 18 16 24 24 C 1.38876 * 119.86753 * 359.73354 * 14 13 12 25 25 C 1.38103 * 119.92700 * 359.97438 * 24 14 13 26 26 H 1.09002 * 109.46651 * 60.00600 * 1 2 3 27 27 H 1.08996 * 109.47079 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47114 * 300.01052 * 1 2 3 29 29 H 1.00902 * 111.00307 * 321.05054 * 4 2 1 30 30 H 1.09007 * 109.47163 * 60.00527 * 5 4 2 31 31 H 1.08999 * 109.47336 * 299.99801 * 5 4 2 32 32 H 1.08003 * 126.57716 * 0.06026 * 7 6 5 33 33 H 1.08004 * 126.57455 * 180.02562 * 8 7 6 34 34 H 1.08007 * 125.78501 * 180.26201 * 9 8 7 35 35 H 1.08008 * 119.96139 * 359.97438 * 12 11 2 36 36 H 1.07994 * 120.04147 * 180.27311 * 13 12 11 37 37 H 0.97007 * 119.99695 * 179.97438 * 19 18 16 38 38 H 1.08001 * 120.04115 * 179.97438 * 24 14 13 39 39 H 1.07997 * 119.96430 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0198 -0.6926 -1.1993 5 6 2.0826 0.2223 -2.3468 6 6 2.5875 -0.5222 -3.5559 7 6 1.8261 -1.1741 -4.4530 8 6 2.7055 -1.7244 -5.4136 9 6 3.9516 -1.3765 -5.0457 10 8 3.8742 -0.6491 -3.9194 11 6 2.0323 -0.7103 1.2306 12 6 2.0608 -2.0925 1.2662 13 6 2.5257 -2.7463 2.3902 14 6 2.9545 -2.0144 3.4899 15 8 3.4073 -2.6542 4.5983 16 6 3.9150 -1.8866 5.5836 17 1 3.8735 -0.8103 5.5055 18 6 4.4906 -2.4792 6.6973 19 7 4.9855 -1.7303 7.6589 20 14 4.5618 -4.3409 6.8327 21 1 5.8248 -4.8333 6.2262 22 1 4.5131 -4.7354 8.2635 23 1 3.4043 -4.9340 6.1160 24 6 2.9193 -0.6265 3.4532 25 6 2.4589 0.0214 2.3239 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8898 29 1 1.4497 -1.4981 -1.4099 30 1 2.7590 1.0460 -2.1182 31 1 1.0872 0.6160 -2.5526 32 1 0.7495 -1.2600 -4.4419 33 1 2.4295 -2.3116 -6.2770 34 1 4.8601 -1.6347 -5.5697 35 1 1.7228 -2.6612 0.4125 36 1 2.5519 -3.8256 2.4159 37 1 5.3878 -2.1448 8.4382 38 1 3.2517 -0.0546 4.3069 39 1 2.4317 1.1007 2.2946 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037184209.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:08 Heat of formation + Delta-G solvation = -2.645577 kcal Electronic energy + Delta-G solvation = -21348.229103 eV Core-core repulsion = 18029.581379 eV Total energy + Delta-G solvation = -3318.647724 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.40301 -40.93385 -39.17834 -37.14780 -34.47188 -33.93679 -32.94590 -31.80600 -30.14124 -29.16401 -27.24393 -25.91960 -23.91011 -23.45681 -22.59973 -21.51267 -21.25739 -19.70818 -19.11056 -18.39761 -17.10743 -16.89775 -16.61699 -16.05369 -15.88302 -15.65001 -15.35658 -15.26019 -14.84512 -14.45660 -14.21552 -14.11142 -13.98251 -13.80769 -13.67207 -13.47234 -13.29724 -13.01318 -12.68462 -12.55531 -12.30827 -12.11473 -12.01493 -11.72355 -11.24368 -10.88485 -10.80323 -9.75942 -9.53537 -9.25241 -8.91884 -8.49341 -6.21379 0.61227 0.67761 0.84726 1.31018 1.35536 1.51922 1.74326 2.19262 2.28622 2.77512 3.06043 3.18445 3.37218 3.85202 3.95647 4.09904 4.18063 4.19001 4.23214 4.37064 4.38749 4.45477 4.56841 4.62154 4.73377 4.91697 4.94648 4.97760 5.01843 5.06875 5.26133 5.27170 5.31777 5.43872 5.57948 5.66662 5.75877 5.82386 5.93778 6.10164 6.27032 6.29158 6.46288 6.85421 7.61419 8.62534 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.025445 B = 0.003008 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.154890 B = 9307.171938 C = 9802.276021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.144 3.856 3 H 0.091 0.909 4 N -0.690 5.690 5 C 0.140 3.860 6 C -0.023 4.023 7 C -0.212 4.212 8 C -0.228 4.228 9 C -0.049 4.049 10 O -0.195 6.195 11 C -0.133 4.133 12 C -0.050 4.050 13 C -0.195 4.195 14 C 0.115 3.885 15 O -0.248 6.248 16 C -0.398 4.398 17 H 0.080 0.920 18 C 0.009 3.991 19 N -0.925 5.925 20 Si 0.971 3.029 21 H -0.267 1.267 22 H -0.266 1.266 23 H -0.263 1.263 24 C -0.236 4.236 25 C -0.071 4.071 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.349 0.651 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.163 0.837 33 H 0.167 0.833 34 H 0.229 0.771 35 H 0.145 0.855 36 H 0.124 0.876 37 H 0.284 0.716 38 H 0.106 0.894 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.008 2.220 -25.842 27.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.035 3.965 3 H 0.109 0.891 4 N -0.322 5.322 5 C 0.012 3.988 6 C -0.074 4.074 7 C -0.232 4.232 8 C -0.247 4.247 9 C -0.116 4.116 10 O -0.091 6.091 11 C -0.135 4.135 12 C -0.068 4.068 13 C -0.214 4.214 14 C 0.067 3.933 15 O -0.156 6.156 16 C -0.475 4.475 17 H 0.098 0.902 18 C -0.189 4.189 19 N -0.566 5.566 20 Si 0.793 3.207 21 H -0.192 1.192 22 H -0.191 1.191 23 H -0.188 1.188 24 C -0.256 4.256 25 C -0.090 4.090 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.169 0.831 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.181 0.819 33 H 0.184 0.816 34 H 0.245 0.755 35 H 0.162 0.838 36 H 0.142 0.858 37 H 0.094 0.906 38 H 0.124 0.876 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.004 2.222 -25.268 26.598 hybrid contribution -0.490 -0.430 0.485 0.813 sum -8.494 1.791 -24.782 26.259 Atomic orbital electron populations 1.22442 0.94789 1.02845 1.02970 1.20198 0.93469 0.96756 0.86060 0.89071 1.60458 1.58895 1.09968 1.02907 1.20373 1.00542 0.93482 0.84413 1.22622 0.80951 1.04380 0.99405 1.21926 1.01626 1.02969 0.96714 1.22171 0.92739 1.06475 1.03322 1.24742 1.01565 0.97561 0.87740 1.84049 1.29345 1.58019 1.37693 1.19680 1.04548 0.93526 0.95708 1.20726 0.96308 0.94142 0.95654 1.20511 1.08190 0.99919 0.92762 1.19665 0.94458 0.92085 0.87106 1.83513 1.71579 1.36380 1.24122 1.20712 1.37800 0.91453 0.97497 0.90215 1.25280 0.94885 1.04883 0.93892 1.69733 1.39431 1.37978 1.09479 0.85212 0.79541 0.78017 0.77901 1.19181 1.19108 1.18751 1.21244 1.09366 0.93996 1.00951 1.20909 0.96284 1.00019 0.91777 0.90570 0.92094 0.92032 0.83100 0.89614 0.89487 0.81937 0.81593 0.75507 0.83750 0.85807 0.90612 0.87574 0.84595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.73 9.14 71.98 0.66 -2.07 16 2 C 0.14 2.93 2.79 44.17 0.12 3.05 16 3 H 0.09 1.73 7.66 -2.39 -0.02 1.71 16 4 N -0.69 -13.39 5.70 -499.47 -2.85 -16.23 16 5 C 0.14 2.27 6.01 85.56 0.51 2.79 16 6 C -0.02 -0.45 6.83 24.83 0.17 -0.28 16 7 C -0.21 -3.53 10.81 22.19 0.24 -3.29 16 8 C -0.23 -3.57 10.91 22.19 0.24 -3.33 16 9 C -0.05 -0.81 12.09 66.97 0.81 0.00 16 10 O -0.19 -4.39 10.65 -2.51 -0.03 -4.42 16 11 C -0.13 -3.94 4.96 -19.83 -0.10 -4.04 16 12 C -0.05 -1.57 9.31 22.25 0.21 -1.36 16 13 C -0.19 -7.69 9.99 22.39 0.22 -7.47 16 14 C 0.12 5.56 6.65 22.58 0.15 5.71 16 15 O -0.25 -13.87 8.59 -22.79 -0.20 -14.07 16 16 C -0.40 -24.05 9.95 67.92 0.68 -23.37 16 17 H 0.08 5.04 5.44 -2.91 -0.02 5.02 16 18 C 0.01 0.51 5.49 84.83 0.47 0.97 16 19 N -0.93 -56.28 13.96 21.61 0.30 -55.98 16 20 Si 0.97 46.46 28.62 68.60 1.96 48.42 16 21 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 23 H -0.26 -12.57 7.11 99.48 0.71 -11.86 16 24 C -0.24 -10.61 9.17 22.39 0.21 -10.40 16 25 C -0.07 -2.47 9.66 22.25 0.21 -2.26 16 26 H 0.08 0.86 7.45 -2.39 -0.02 0.84 16 27 H 0.06 0.98 8.13 -2.39 -0.02 0.96 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.35 6.03 7.81 -89.69 -0.70 5.33 16 30 H 0.09 1.46 8.06 -2.38 -0.02 1.44 16 31 H 0.09 0.96 7.44 -2.39 -0.02 0.94 16 32 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 33 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 34 H 0.23 2.02 8.06 -2.91 -0.02 2.00 16 35 H 0.14 3.56 7.25 -2.91 -0.02 3.54 16 36 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 37 H 0.28 15.84 8.31 -92.70 -0.77 15.07 16 38 H 0.11 5.25 5.64 -2.91 -0.02 5.23 16 39 H 0.14 3.88 8.03 -2.91 -0.02 3.85 16 Total: -1.00 -71.37 334.17 4.37 -67.00 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: 0.37 Total: 20.63 kcal Atomic # 6 Polarization: -50.16 SS G_CDS: 4.80 Total: -45.36 kcal Atomic # 7 Polarization: -69.67 SS G_CDS: -2.54 Total: -72.21 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.22 Total: -18.48 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.96 Total: 48.42 kcal Total: -71.37 4.37 -67.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037184209.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.355 kcal (2) G-P(sol) polarization free energy of solvation -71.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds