Wall clock time and date at job start Tue Mar 31 2020 06:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.47425 * 2 1 4 4 C 1.46505 * 119.99924 * 74.70489 * 3 2 1 5 5 C 1.50694 * 109.47268 * 90.00274 * 4 3 2 6 6 H 1.07999 * 119.99747 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00271 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99842 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00235 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47084 * 89.99829 * 9 7 5 11 11 H 1.48497 * 109.47456 * 209.99762 * 9 7 5 12 12 H 1.48503 * 109.47194 * 330.00240 * 9 7 5 13 13 C 1.34771 * 119.99874 * 254.70774 * 3 2 1 14 14 O 1.21554 * 119.99657 * 183.48809 * 13 3 2 15 15 C 1.47863 * 120.00033 * 3.49061 * 13 3 2 16 16 C 1.39666 * 120.07960 * 23.15146 * 15 13 3 17 17 C 1.38044 * 120.14375 * 179.74742 * 16 15 13 18 18 C 1.38115 * 120.29246 * 0.55827 * 17 16 15 19 19 C 1.39604 * 120.15180 * 359.70029 * 18 17 16 20 20 C 1.43198 * 120.07379 * 179.97438 * 19 18 17 21 21 C 7.50506 * 118.92949 * 280.71305 * 2 1 3 22 22 C 8.94609 * 120.92531 * 281.46035 * 2 1 3 23 23 O 1.42896 * 109.47227 * 342.60727 * 22 21 20 24 24 C 1.39309 * 119.85860 * 0.02562 * 19 18 17 25 25 H 1.08995 * 109.47021 * 300.00540 * 1 2 3 26 26 H 1.09005 * 109.46734 * 60.00076 * 1 2 3 27 27 H 1.08994 * 109.47140 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47460 * 239.99156 * 2 1 3 29 29 H 1.09005 * 109.46842 * 119.99380 * 2 1 3 30 30 H 1.09000 * 109.47363 * 329.99914 * 4 3 2 31 31 H 1.09001 * 109.47199 * 210.00187 * 4 3 2 32 32 H 0.97003 * 119.99967 * 180.02562 * 8 7 5 33 33 H 1.08007 * 119.92840 * 0.02562 * 16 15 13 34 34 H 1.07995 * 119.85243 * 180.25922 * 17 16 15 35 35 H 1.07997 * 119.92069 * 179.72032 * 18 17 16 36 36 H 1.09005 * 109.47164 * 102.61127 * 22 21 20 37 37 H 1.08994 * 109.47244 * 222.60515 * 22 21 20 38 38 H 0.96699 * 114.00399 * 179.97438 * 23 22 21 39 39 H 1.07995 * 120.15242 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.9471 2.1834 1.2238 5 6 3.2147 2.0016 2.0182 6 1 3.9952 1.3531 1.6487 7 6 3.3780 2.6632 3.2168 8 7 2.4278 3.4534 3.6665 9 14 4.9490 2.4373 4.2018 10 1 5.9444 3.4584 3.7872 11 1 4.6530 2.5936 5.6486 12 1 5.4988 1.0805 3.9527 13 6 2.5333 1.9139 -1.1258 14 8 2.9965 3.0376 -1.1098 15 6 2.5347 1.1313 -2.3804 16 6 1.6192 0.0916 -2.5580 17 6 1.6159 -0.6364 -3.7308 18 6 2.5241 -0.3499 -4.7312 19 6 3.4482 0.6832 -4.5646 20 6 4.3894 0.9784 -5.6026 21 6 5.1605 1.2210 -6.4541 22 6 6.1276 1.5248 -7.5213 23 8 7.1044 0.4841 -7.5893 24 6 3.4534 1.4256 -3.3858 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8898 29 1 1.8933 -0.5138 0.8901 30 1 1.0945 1.8601 1.8211 31 1 1.8297 3.2351 0.9626 32 1 2.5429 3.9191 4.5096 33 1 0.9093 -0.1404 -1.7778 34 1 0.9032 -1.4366 -3.8648 35 1 2.5192 -0.9263 -5.6445 36 1 5.6054 1.5960 -8.4754 37 1 6.6209 2.4725 -7.3057 38 1 7.7752 0.6182 -8.2728 39 1 4.1658 2.2261 -3.2521 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454050.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:48 Heat of formation + Delta-G solvation = 21.631738 kcal Electronic energy + Delta-G solvation = -21473.261206 eV Core-core repulsion = 18155.666225 eV Total energy + Delta-G solvation = -3317.594981 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.20192 -38.06689 -37.34563 -35.71925 -33.99901 -32.84142 -31.11044 -30.98254 -30.09707 -27.33974 -26.84870 -23.97033 -23.37470 -22.69525 -21.88688 -19.44704 -17.93067 -17.75854 -16.79812 -16.44012 -16.11752 -15.67763 -15.31511 -15.00839 -14.73375 -14.29718 -14.11942 -13.74276 -13.33854 -13.24521 -13.06790 -12.51460 -12.29053 -12.06263 -11.84497 -11.54608 -11.24122 -11.24022 -11.16167 -10.98879 -10.88083 -10.60157 -10.40598 -10.11715 -9.95693 -9.64152 -9.07564 -8.91930 -8.47714 -8.42564 -7.70289 -6.04000 -4.08353 0.73365 1.15635 2.41428 2.56871 3.32505 3.38275 3.39791 3.43693 3.66583 3.92155 4.10927 4.45775 4.50714 4.79424 4.86199 4.90095 4.99917 5.07930 5.12994 5.28148 5.30686 5.38104 5.45957 5.52920 5.69538 5.81537 5.94907 5.95822 6.22707 6.25668 6.34736 6.37900 6.49382 6.79252 7.06680 7.19437 7.36897 7.42129 7.51067 7.92325 8.23157 8.36044 8.88377 9.03997 9.56558 11.04194 Molecular weight = 287.13amu Principal moments of inertia in cm(-1) A = 0.016304 B = 0.003740 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.957470 B = 7484.591103 C = 8699.888486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.073 3.927 3 N -0.586 5.586 4 C 0.246 3.754 5 C -0.526 4.526 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.544 3.456 14 O -0.533 6.533 15 C -0.118 4.118 16 C -0.111 4.111 17 C -0.131 4.131 18 C -0.078 4.078 19 C -0.006 4.006 20 C -0.099 4.099 21 C -0.178 4.178 22 C 0.196 3.804 23 O -0.568 6.568 24 C -0.038 4.038 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.036 0.964 31 H 0.044 0.956 32 H 0.263 0.737 33 H 0.169 0.831 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.387 0.613 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.574 -9.242 -19.783 21.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.051 4.051 3 N -0.317 5.317 4 C 0.128 3.872 5 C -0.565 4.565 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.726 3.274 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.330 3.670 14 O -0.412 6.412 15 C -0.121 4.121 16 C -0.128 4.128 17 C -0.149 4.149 18 C -0.097 4.097 19 C -0.006 4.006 20 C -0.099 4.099 21 C -0.178 4.178 22 C 0.119 3.881 23 O -0.374 6.374 24 C -0.057 4.057 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.113 0.887 29 H 0.097 0.903 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.185 0.815 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.235 0.765 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.746 -8.749 -19.070 20.994 hybrid contribution 1.184 0.147 0.201 1.210 sum 0.438 -8.602 -18.869 20.742 Atomic orbital electron populations 1.22287 0.96416 1.01930 1.03004 1.22300 0.93934 0.84831 1.03987 1.48139 1.58865 1.13013 1.11673 1.19312 0.97250 0.91505 0.79180 1.21427 1.02555 1.27844 1.04626 0.92405 1.24925 0.96782 0.94921 0.97448 1.69931 1.32919 1.29362 1.21240 0.86494 0.83400 0.78599 0.78919 1.20534 1.21144 1.19904 1.18125 0.79364 0.86417 0.83062 1.90760 1.45750 1.19421 1.85226 1.20212 0.98077 0.97861 0.95966 1.22776 0.98755 0.93297 0.98004 1.21057 0.99537 1.00991 0.93290 1.21312 0.93635 0.95569 0.99144 1.15762 0.95336 0.98232 0.91295 1.19161 0.96743 0.98605 0.95414 1.21619 0.97462 1.01728 0.97040 1.18677 0.86475 0.90108 0.92792 1.86567 1.42385 1.47393 1.61081 1.21346 0.96713 0.97213 0.90398 0.91042 0.92282 0.91670 0.88680 0.90332 0.94647 0.93804 0.92718 0.81465 0.84958 0.85518 0.90958 0.90774 0.76532 0.84460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 9.05 37.16 0.34 -2.00 16 2 C 0.07 1.17 5.59 -4.04 -0.02 1.15 16 3 N -0.59 -12.62 2.50 -176.17 -0.44 -13.06 16 4 C 0.25 6.46 5.08 -5.19 -0.03 6.43 16 5 C -0.53 -15.09 9.39 -34.44 -0.32 -15.41 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 9 Si 0.90 22.14 29.54 -169.99 -5.02 17.11 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.54 11.96 7.51 -12.32 -0.09 11.87 16 14 O -0.53 -14.02 16.19 5.32 0.09 -13.94 16 15 C -0.12 -2.04 5.60 -105.02 -0.59 -2.63 16 16 C -0.11 -1.49 7.50 -39.12 -0.29 -1.78 16 17 C -0.13 -1.44 10.02 -39.70 -0.40 -1.84 16 18 C -0.08 -0.93 9.74 -39.12 -0.38 -1.31 16 19 C -0.01 -0.09 5.72 -107.06 -0.61 -0.70 16 20 C -0.10 -1.43 13.23 -38.84 -0.51 -1.94 16 21 C -0.18 -2.31 13.73 -37.12 -0.51 -2.82 16 22 C 0.20 1.65 7.52 34.37 0.26 1.91 16 23 O -0.57 -5.10 13.62 -35.23 -0.48 -5.58 16 24 C -0.04 -0.63 9.29 -38.78 -0.36 -0.99 16 25 H 0.07 1.06 7.41 -51.93 -0.38 0.68 16 26 H 0.06 0.73 7.03 -51.93 -0.37 0.37 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.10 1.32 4.01 -52.57 -0.21 1.11 16 29 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.04 0.92 7.30 -51.93 -0.38 0.54 16 31 H 0.04 1.30 7.47 -51.93 -0.39 0.91 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.17 2.03 2.35 -52.48 -0.12 1.91 16 34 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 36 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.39 1.18 9.12 45.56 0.42 1.59 16 39 H 0.14 2.41 7.82 -52.49 -0.41 2.00 16 LS Contribution 338.19 15.07 5.10 5.10 Total: -1.00 -36.39 338.19 -7.57 -43.96 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -3.93 Total: 0.78 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -3.62 Total: -8.39 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.30 Total: -39.04 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.39 Total: -19.52 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -36.39 -7.57 -43.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454050.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.593 kcal (2) G-P(sol) polarization free energy of solvation -36.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds